Wall clock time and date at job start Mon Mar 30 2020 06:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 5 5 N 1.29030 * 124.91923 * 239.72341 * 4 2 1 6 6 C 1.31780 * 117.12595 * 179.81370 * 5 4 2 7 7 C 1.50702 * 122.74830 * 180.22069 * 6 5 4 8 8 H 1.09001 * 109.46725 * 65.29743 * 7 6 5 9 9 C 1.52998 * 109.47662 * 305.29334 * 7 6 5 10 10 N 1.46903 * 109.47185 * 185.29255 * 7 6 5 11 11 C 1.46904 * 111.00167 * 205.00588 * 10 7 6 12 12 H 1.08998 * 109.46756 * 324.99620 * 11 10 7 13 13 C 1.52997 * 109.47168 * 84.99571 * 11 10 7 14 14 C 1.50701 * 109.46805 * 204.99944 * 11 10 7 15 15 H 1.07999 * 120.00105 * 359.97438 * 14 11 10 16 16 C 1.37876 * 119.99582 * 179.97438 * 14 11 10 17 17 N 1.31517 * 120.00238 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 119.99726 * 180.02562 * 16 14 11 19 19 H 1.48494 * 109.47289 * 60.00009 * 18 16 14 20 20 H 1.48507 * 109.46957 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47035 * 299.99769 * 18 16 14 22 22 C 1.33637 * 114.50029 * 0.47413 * 6 5 4 23 23 S 1.70974 * 124.91868 * 60.02766 * 4 2 1 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.08997 * 109.47368 * 179.97438 * 9 7 6 32 32 H 1.08994 * 109.47080 * 300.00592 * 9 7 6 33 33 H 1.09000 * 109.46855 * 59.99892 * 9 7 6 34 34 H 1.00898 * 110.99890 * 81.04598 * 10 7 6 35 35 H 1.09000 * 109.47092 * 179.97438 * 13 11 10 36 36 H 1.08992 * 109.47711 * 300.00112 * 13 11 10 37 37 H 1.09007 * 109.47152 * 60.00373 * 13 11 10 38 38 H 0.97004 * 119.99812 * 180.02562 * 17 16 14 39 39 H 1.08000 * 126.03621 * 179.71957 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 2.7814 -1.7610 -1.2227 6 6 3.1285 -2.2600 -2.3919 7 6 3.9951 -3.4852 -2.5305 8 1 3.4662 -4.3511 -2.1323 9 6 5.2965 -3.2802 -1.7526 10 7 4.3028 -3.7093 -3.9493 11 6 4.6049 -5.1240 -4.2054 12 1 5.1276 -5.5451 -3.3466 13 6 3.3008 -5.8905 -4.4348 14 6 5.4766 -5.2378 -5.4294 15 1 5.7759 -4.3484 -5.9639 16 6 5.8920 -6.4776 -5.8669 17 7 5.5271 -7.5608 -5.2164 18 14 6.9732 -6.6187 -7.3837 19 1 8.2386 -5.8745 -7.1606 20 1 7.2795 -8.0487 -7.6420 21 1 6.2613 -6.0452 -8.5541 22 6 2.6536 -1.5876 -3.4446 23 16 1.6982 -0.2367 -2.8389 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 5.9230 -4.1665 -1.8525 32 1 5.8252 -2.4143 -2.1508 33 1 5.0681 -3.1139 -0.6998 34 1 5.0611 -3.1169 -4.2528 35 1 3.5250 -6.9401 -4.6253 36 1 2.6703 -5.8082 -3.5496 37 1 2.7781 -5.4694 -5.2937 38 1 5.8198 -8.4330 -5.5240 39 1 2.8256 -1.8291 -4.4831 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390206207.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:19 Heat of formation + Delta-G solvation = 26.789493 kcal Electronic energy + Delta-G solvation = -18296.770559 eV Core-core repulsion = 15558.555519 eV Total energy + Delta-G solvation = -2738.215040 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.80007 -36.69473 -35.36153 -33.03417 -30.45266 -28.95212 -27.41116 -27.00076 -25.18657 -24.97786 -22.81045 -20.66217 -19.91512 -19.01241 -17.30559 -16.40425 -15.58512 -15.09487 -14.60343 -14.53431 -14.10950 -13.89170 -13.39533 -13.09685 -12.87400 -12.50987 -12.39766 -12.25542 -11.94213 -11.72937 -11.49791 -11.40217 -11.18013 -11.05447 -10.92424 -10.73320 -10.46893 -10.38442 -10.14010 -9.93364 -9.39785 -9.11412 -8.87223 -8.49404 -8.36532 -7.34489 -6.03990 -4.10592 1.03483 1.63012 2.03203 3.13049 3.30207 3.34891 3.37313 4.03200 4.39133 4.69036 4.89344 4.89492 5.26200 5.29831 5.36061 5.48946 5.56020 5.59494 5.69180 5.76431 5.77845 5.86126 5.97680 5.99109 6.08793 6.29797 6.45130 6.47865 6.65708 6.89418 7.14321 7.20847 7.49220 7.75683 7.86209 8.07786 8.24774 8.34798 8.62467 8.99132 9.55338 11.02338 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.040959 B = 0.003915 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.446844 B = 7149.781106 C = 7244.255588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.018 4.018 3 C -0.146 4.146 4 C 0.046 3.954 5 N -0.466 5.466 6 C 0.076 3.924 7 C 0.158 3.842 8 H 0.087 0.913 9 C -0.166 4.166 10 N -0.683 5.683 11 C 0.215 3.785 12 H 0.005 0.995 13 C -0.125 4.125 14 C -0.519 4.519 15 H 0.059 0.941 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.897 3.103 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.217 4.217 23 S 0.076 5.924 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.097 0.903 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.334 0.666 35 H 0.081 0.919 36 H 0.004 0.996 37 H 0.031 0.969 38 H 0.262 0.738 39 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.936 15.403 8.880 19.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.040 4.040 3 C -0.204 4.204 4 C -0.233 4.233 5 N -0.180 5.180 6 C -0.055 4.055 7 C 0.044 3.956 8 H 0.105 0.895 9 C -0.226 4.226 10 N -0.314 5.314 11 C 0.108 3.892 12 H 0.023 0.977 13 C -0.184 4.184 14 C -0.558 4.558 15 H 0.077 0.923 16 C -0.139 4.139 17 N -0.528 5.528 18 Si 0.725 3.275 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.355 4.355 23 S 0.329 5.671 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.116 0.884 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.152 0.848 35 H 0.100 0.900 36 H 0.023 0.977 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -8.975 15.694 8.704 20.065 hybrid contribution 1.982 -1.056 -0.614 2.328 sum -6.992 14.638 8.091 18.128 Atomic orbital electron populations 1.21911 0.93461 1.02665 1.02390 1.19743 0.95875 0.95228 0.93119 1.21906 1.01752 0.94335 1.02393 1.26900 1.00827 0.97155 0.98455 1.65985 1.12770 1.10070 1.29160 1.20431 1.00211 0.99045 0.85780 1.19846 0.92845 0.91912 0.90950 0.89462 1.22336 0.97889 1.01703 1.00649 1.60654 1.46929 1.10472 1.13388 1.19095 0.92958 0.81567 0.95630 0.97695 1.21738 0.96540 1.03095 0.96988 1.21191 1.30232 0.92767 1.11575 0.92272 1.24906 0.96212 0.95749 0.97045 1.69888 1.45125 0.97931 1.39838 0.86586 0.80794 0.76899 0.83257 1.20340 1.21316 1.20215 1.26951 1.04641 0.98233 1.05684 1.83694 1.50464 1.30502 1.02442 0.92231 0.91477 0.92029 0.88443 0.91487 0.92097 0.92234 0.91809 0.93222 0.92348 0.84833 0.90035 0.97744 0.95002 0.92843 0.79505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.09 37.16 0.34 -0.90 16 2 C -0.02 -0.18 3.35 -91.78 -0.31 -0.49 16 3 C -0.15 -1.21 9.09 37.15 0.34 -0.87 16 4 C 0.05 0.63 6.03 -13.46 -0.08 0.54 16 5 N -0.47 -7.74 10.34 -8.06 -0.08 -7.82 16 6 C 0.08 1.33 6.07 -84.23 -0.51 0.82 16 7 C 0.16 3.01 2.93 -68.86 -0.20 2.81 16 8 H 0.09 1.80 7.11 -51.93 -0.37 1.43 16 9 C -0.17 -2.93 9.04 37.16 0.34 -2.59 16 10 N -0.68 -14.28 4.88 -102.17 -0.50 -14.78 16 11 C 0.21 5.34 2.41 -68.86 -0.17 5.17 16 12 H 0.01 0.15 7.11 -51.93 -0.37 -0.22 16 13 C -0.13 -3.12 9.18 37.16 0.34 -2.78 16 14 C -0.52 -13.99 8.59 -34.44 -0.30 -14.28 16 15 H 0.06 1.56 7.62 -52.49 -0.40 1.16 16 16 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 17 N -0.89 -25.23 11.32 55.43 0.63 -24.61 16 18 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 C -0.22 -3.51 10.52 29.12 0.31 -3.21 16 23 S 0.08 0.98 22.53 -107.50 -2.42 -1.44 16 24 H 0.06 0.49 7.93 -51.93 -0.41 0.08 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.48 7.93 -51.93 -0.41 0.07 16 31 H 0.06 1.19 7.43 -51.93 -0.39 0.80 16 32 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 33 H 0.06 0.97 8.07 -51.93 -0.42 0.55 16 34 H 0.33 6.85 7.96 -39.29 -0.31 6.53 16 35 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 36 H 0.00 0.08 7.43 -51.93 -0.39 -0.30 16 37 H 0.03 0.78 8.14 -51.92 -0.42 0.35 16 38 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.19 3.08 7.50 -52.49 -0.39 2.69 16 LS Contribution 328.99 15.07 4.96 4.96 Total: -1.00 -28.41 328.99 -8.71 -37.12 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -6.27 Total: 4.62 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: 0.00 Total: -14.15 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: 0.05 Total: -47.21 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.42 Total: -1.44 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.41 -8.71 -37.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390206207.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.907 kcal (2) G-P(sol) polarization free energy of solvation -28.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds