Wall clock time and date at job start Mon Mar 30 2020 06:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 5 5 N 1.29030 * 124.91923 * 239.72341 * 4 2 1 6 6 C 1.31780 * 117.12595 * 179.81370 * 5 4 2 7 7 C 1.50702 * 122.74830 * 180.22069 * 6 5 4 8 8 H 1.09001 * 109.46725 * 65.29743 * 7 6 5 9 9 C 1.52998 * 109.47662 * 305.29334 * 7 6 5 10 10 N 1.46903 * 109.47185 * 185.29255 * 7 6 5 11 11 C 1.46904 * 111.00167 * 205.00588 * 10 7 6 12 12 H 1.08998 * 109.46756 * 324.99620 * 11 10 7 13 13 C 1.52997 * 109.47168 * 84.99571 * 11 10 7 14 14 C 1.50701 * 109.46805 * 204.99944 * 11 10 7 15 15 H 1.07999 * 120.00105 * 359.97438 * 14 11 10 16 16 C 1.37876 * 119.99582 * 179.97438 * 14 11 10 17 17 N 1.31517 * 120.00238 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 119.99726 * 180.02562 * 16 14 11 19 19 H 1.48494 * 109.47289 * 60.00009 * 18 16 14 20 20 H 1.48507 * 109.46957 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47035 * 299.99769 * 18 16 14 22 22 C 1.33637 * 114.50029 * 0.47413 * 6 5 4 23 23 S 1.70974 * 124.91868 * 60.02766 * 4 2 1 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.08997 * 109.47368 * 179.97438 * 9 7 6 32 32 H 1.08994 * 109.47080 * 300.00592 * 9 7 6 33 33 H 1.09000 * 109.46855 * 59.99892 * 9 7 6 34 34 H 1.00898 * 110.99890 * 81.04598 * 10 7 6 35 35 H 1.09000 * 109.47092 * 179.97438 * 13 11 10 36 36 H 1.08992 * 109.47711 * 300.00112 * 13 11 10 37 37 H 1.09007 * 109.47152 * 60.00373 * 13 11 10 38 38 H 0.97004 * 119.99812 * 180.02562 * 17 16 14 39 39 H 1.08000 * 126.03621 * 179.71957 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 2.7814 -1.7610 -1.2227 6 6 3.1285 -2.2600 -2.3919 7 6 3.9951 -3.4852 -2.5305 8 1 3.4662 -4.3511 -2.1323 9 6 5.2965 -3.2802 -1.7526 10 7 4.3028 -3.7093 -3.9493 11 6 4.6049 -5.1240 -4.2054 12 1 5.1276 -5.5451 -3.3466 13 6 3.3008 -5.8905 -4.4348 14 6 5.4766 -5.2378 -5.4294 15 1 5.7759 -4.3484 -5.9639 16 6 5.8920 -6.4776 -5.8669 17 7 5.5271 -7.5608 -5.2164 18 14 6.9732 -6.6187 -7.3837 19 1 8.2386 -5.8745 -7.1606 20 1 7.2795 -8.0487 -7.6420 21 1 6.2613 -6.0452 -8.5541 22 6 2.6536 -1.5876 -3.4446 23 16 1.6982 -0.2367 -2.8389 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 5.9230 -4.1665 -1.8525 32 1 5.8252 -2.4143 -2.1508 33 1 5.0681 -3.1139 -0.6998 34 1 5.0611 -3.1169 -4.2528 35 1 3.5250 -6.9401 -4.6253 36 1 2.6703 -5.8082 -3.5496 37 1 2.7781 -5.4694 -5.2937 38 1 5.8198 -8.4330 -5.5240 39 1 2.8256 -1.8291 -4.4831 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390206207.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:19 Heat of formation + Delta-G solvation = 10.079224 kcal Electronic energy + Delta-G solvation = -18297.495170 eV Core-core repulsion = 15558.555519 eV Total energy + Delta-G solvation = -2738.939652 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.03957 -38.24369 -36.43191 -34.88621 -32.25520 -30.21951 -28.77689 -28.05126 -27.27045 -26.14171 -24.17836 -21.92316 -21.46379 -20.41001 -18.79911 -18.04591 -16.93654 -16.73397 -16.05619 -15.71164 -15.46731 -15.10592 -14.98488 -14.35246 -14.22835 -13.88077 -13.68428 -13.42575 -13.33019 -13.03734 -12.81643 -12.67548 -12.57220 -12.53161 -12.34573 -12.19504 -12.10483 -12.06826 -11.84061 -11.70211 -10.92813 -10.58898 -10.53149 -10.26333 -9.55486 -9.11438 -8.12899 -6.26826 -0.12339 0.51449 0.85608 1.43420 1.44957 1.52490 1.87334 2.41391 2.93292 3.16404 3.60487 3.93663 4.04612 4.17510 4.23335 4.27302 4.38194 4.62807 4.72072 4.77770 4.79976 4.82106 4.90095 4.94520 4.98228 5.03751 5.08903 5.14830 5.20843 5.29653 5.33015 5.34631 5.49552 5.67838 5.83895 6.20359 6.43481 6.70647 6.88634 6.99278 7.43413 8.92918 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.040959 B = 0.003915 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.446844 B = 7149.781106 C = 7244.255588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.021 4.021 3 C -0.142 4.142 4 C 0.045 3.955 5 N -0.496 5.496 6 C 0.062 3.938 7 C 0.161 3.839 8 H 0.065 0.935 9 C -0.154 4.154 10 N -0.674 5.674 11 C 0.221 3.779 12 H -0.024 1.024 13 C -0.113 4.113 14 C -0.536 4.536 15 H 0.062 0.938 16 C 0.014 3.986 17 N -0.918 5.918 18 Si 0.962 3.038 19 H -0.271 1.271 20 H -0.286 1.286 21 H -0.271 1.271 22 C -0.241 4.241 23 S 0.143 5.857 24 H 0.064 0.936 25 H 0.092 0.908 26 H 0.048 0.952 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.337 0.663 35 H 0.058 0.942 36 H 0.014 0.986 37 H 0.029 0.971 38 H 0.262 0.738 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.593 17.698 8.952 21.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.043 4.043 3 C -0.200 4.200 4 C -0.233 4.233 5 N -0.211 5.211 6 C -0.069 4.069 7 C 0.047 3.953 8 H 0.083 0.917 9 C -0.214 4.214 10 N -0.304 5.304 11 C 0.113 3.887 12 H -0.007 1.007 13 C -0.172 4.172 14 C -0.574 4.574 15 H 0.080 0.920 16 C -0.185 4.185 17 N -0.557 5.557 18 Si 0.788 3.212 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.196 1.196 22 C -0.380 4.380 23 S 0.398 5.602 24 H 0.083 0.917 25 H 0.111 0.889 26 H 0.068 0.932 27 H 0.113 0.887 28 H 0.110 0.890 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.155 0.845 35 H 0.077 0.923 36 H 0.033 0.967 37 H 0.048 0.952 38 H 0.071 0.929 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -9.643 18.019 8.781 22.244 hybrid contribution 2.103 -1.682 -0.560 2.750 sum -7.541 16.336 8.221 19.782 Atomic orbital electron populations 1.21918 0.91879 1.02376 1.03946 1.19975 0.97060 0.95950 0.91299 1.21907 1.01164 0.93012 1.03921 1.27651 0.99156 0.96149 1.00367 1.65984 1.14616 1.11669 1.28868 1.20121 1.00976 0.98945 0.86854 1.19710 0.93634 0.92328 0.89604 0.91717 1.22194 0.96958 1.01136 1.01076 1.60537 1.46639 1.08206 1.15045 1.18865 0.92298 0.83550 0.94007 1.00672 1.21562 0.96742 1.01585 0.97268 1.21518 1.30645 0.93047 1.12194 0.92014 1.25716 0.97474 0.95424 0.99898 1.70023 1.46099 0.98325 1.41286 0.85547 0.79139 0.76870 0.79660 1.19583 1.21112 1.19621 1.26992 1.05705 1.00059 1.05236 1.83391 1.48329 1.27731 1.00749 0.91739 0.88911 0.93244 0.88713 0.88977 0.93050 0.91738 0.93483 0.92398 0.91437 0.84527 0.92312 0.96680 0.95225 0.92855 0.80224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.09 71.98 0.65 -1.35 16 2 C -0.02 -0.37 3.35 -11.54 -0.04 -0.41 16 3 C -0.14 -1.92 9.09 71.98 0.65 -1.26 16 4 C 0.05 1.17 6.03 88.52 0.53 1.70 16 5 N -0.50 -16.21 10.34 -179.40 -1.85 -18.07 16 6 C 0.06 2.17 6.07 41.52 0.25 2.42 16 7 C 0.16 6.27 2.93 44.17 0.13 6.39 16 8 H 0.06 2.79 7.11 -2.39 -0.02 2.77 16 9 C -0.15 -5.54 9.04 71.98 0.65 -4.89 16 10 N -0.67 -28.73 4.88 -477.15 -2.33 -31.06 16 11 C 0.22 11.31 2.41 44.17 0.11 11.42 16 12 H -0.02 -1.37 7.11 -2.39 -0.02 -1.39 16 13 C -0.11 -5.78 9.18 71.98 0.66 -5.12 16 14 C -0.54 -29.20 8.59 25.60 0.22 -28.98 16 15 H 0.06 3.26 7.62 -2.91 -0.02 3.24 16 16 C 0.01 0.78 5.30 84.65 0.45 1.23 16 17 N -0.92 -53.05 11.32 21.45 0.24 -52.81 16 18 Si 0.96 43.33 29.54 68.60 2.03 45.36 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 22 C -0.24 -7.67 10.52 66.78 0.70 -6.97 16 23 S 0.14 3.42 22.53 -56.49 -1.27 2.15 16 24 H 0.06 0.84 7.93 -2.39 -0.02 0.82 16 25 H 0.09 0.85 8.14 -2.39 -0.02 0.84 16 26 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 27 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.81 7.93 -2.39 -0.02 0.79 16 31 H 0.05 1.81 7.43 -2.39 -0.02 1.79 16 32 H 0.06 1.95 8.13 -2.39 -0.02 1.93 16 33 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 34 H 0.34 13.99 7.96 -89.70 -0.71 13.27 16 35 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 36 H 0.01 0.69 7.43 -2.39 -0.02 0.67 16 37 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 38 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 39 H 0.18 5.90 7.50 -2.91 -0.02 5.88 16 Total: -1.00 -61.23 328.99 2.10 -59.13 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.31 Total: 21.14 kcal Atomic # 6 Polarization: -30.81 SS G_CDS: 4.98 Total: -25.83 kcal Atomic # 7 Polarization: -98.00 SS G_CDS: -3.94 Total: -101.94 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: 3.42 SS G_CDS: -1.27 Total: 2.15 kcal Total: -61.23 2.10 -59.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390206207.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.205 kcal (2) G-P(sol) polarization free energy of solvation -61.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds