Wall clock time and date at job start Mon Mar 30 2020 06:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47127 * 2 1 4 4 C 1.50704 * 109.47274 * 240.00135 * 2 1 3 5 5 N 1.29030 * 124.91765 * 239.99868 * 4 2 1 6 6 C 1.31781 * 117.12378 * 179.97438 * 5 4 2 7 7 C 1.50698 * 122.74503 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47204 * 294.99523 * 7 6 5 9 9 C 1.52993 * 109.47528 * 54.99850 * 7 6 5 10 10 N 1.46906 * 109.46728 * 175.00171 * 7 6 5 11 11 C 1.46898 * 110.99805 * 160.02705 * 10 7 6 12 12 H 1.09003 * 109.47695 * 32.81364 * 11 10 7 13 13 C 1.53004 * 109.47342 * 152.81547 * 11 10 7 14 14 C 1.50705 * 109.46920 * 272.81015 * 11 10 7 15 15 H 1.07997 * 120.00048 * 0.02562 * 14 11 10 16 16 C 1.37876 * 119.99912 * 180.02562 * 14 11 10 17 17 N 1.31510 * 120.00244 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 119.99804 * 180.02562 * 16 14 11 19 19 H 1.48505 * 109.46955 * 90.00066 * 18 16 14 20 20 H 1.48496 * 109.47251 * 210.00083 * 18 16 14 21 21 H 1.48498 * 109.47348 * 330.00423 * 18 16 14 22 22 C 1.33636 * 114.50017 * 359.97438 * 6 5 4 23 23 S 1.70974 * 124.91448 * 59.69913 * 4 2 1 24 24 H 1.09000 * 109.47446 * 60.00179 * 1 2 3 25 25 H 1.08992 * 109.47531 * 299.99597 * 1 2 3 26 26 H 1.09003 * 109.47092 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47603 * 120.00350 * 2 1 3 28 28 H 1.09000 * 109.47192 * 60.00033 * 3 2 1 29 29 H 1.08999 * 109.46832 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47201 * 299.99840 * 3 2 1 31 31 H 1.09003 * 109.47281 * 185.05941 * 9 7 6 32 32 H 1.09001 * 109.47326 * 305.06465 * 9 7 6 33 33 H 1.09007 * 109.47246 * 65.06286 * 9 7 6 34 34 H 1.00896 * 111.00213 * 36.06679 * 10 7 6 35 35 H 1.08997 * 109.46921 * 180.02562 * 13 11 10 36 36 H 1.08998 * 109.46685 * 300.03403 * 13 11 10 37 37 H 1.09005 * 109.47025 * 60.03050 * 13 11 10 38 38 H 0.97001 * 120.00182 * 179.97438 * 17 16 14 39 39 H 1.08002 * 126.03667 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 2.7773 -1.7639 -1.2227 6 6 3.1279 -2.2605 -2.3919 7 6 3.9938 -3.4861 -2.5305 8 1 4.9863 -3.2766 -2.1317 9 6 3.3659 -4.6447 -1.7532 10 7 4.1031 -3.8504 -3.9494 11 6 5.2728 -4.7075 -4.1842 12 1 5.4449 -5.3351 -3.3098 13 6 5.0193 -5.5931 -5.4058 14 6 6.4849 -3.8465 -4.4309 15 1 6.3952 -2.7704 -4.4145 16 6 7.7082 -4.4327 -4.6776 17 7 7.8173 -5.7431 -4.6981 18 14 9.2107 -3.3655 -4.9828 19 1 9.8863 -3.0811 -3.6913 20 1 10.1492 -4.0786 -5.8859 21 1 8.7909 -2.0883 -5.6135 22 6 2.6517 -1.5889 -3.4446 23 16 1.6916 -0.2413 -2.8389 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 0.5137 0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8899 28 1 1.6766 1.9563 0.8900 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 4.0357 -5.5043 -1.7785 32 1 3.2020 -4.3420 -0.7190 33 1 2.4126 -4.9134 -2.2086 34 1 4.1346 -3.0277 -4.5326 35 1 5.8871 -6.2293 -5.5797 36 1 4.1422 -6.2154 -5.2276 37 1 4.8478 -4.9655 -6.2804 38 1 8.6778 -6.1555 -4.8721 39 1 2.8228 -1.8310 -4.4831 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390206208.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:22 Heat of formation + Delta-G solvation = 11.215788 kcal Electronic energy + Delta-G solvation = -18395.712575 eV Core-core repulsion = 15656.822208 eV Total energy + Delta-G solvation = -2738.890367 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.14051 -38.20384 -36.45229 -34.81349 -32.35173 -30.39250 -28.87532 -28.06500 -27.17952 -26.18524 -23.95548 -21.96089 -21.56956 -20.31753 -18.89431 -18.21231 -17.10926 -16.76832 -16.21411 -15.92412 -15.35153 -15.21830 -14.86886 -14.49993 -14.00642 -13.79749 -13.62232 -13.37237 -13.11165 -13.04201 -12.96754 -12.84786 -12.62362 -12.56885 -12.27564 -12.14685 -12.07826 -11.97965 -11.82927 -11.70640 -11.13876 -10.57994 -10.52614 -10.33730 -9.65517 -9.18245 -8.10704 -6.31415 -0.20981 0.44804 0.77607 1.36150 1.37664 1.46945 1.80725 2.37626 2.91796 3.12199 3.57390 3.85216 4.02177 4.15839 4.22435 4.30922 4.44817 4.55548 4.67949 4.76544 4.83910 4.90966 4.91176 4.93475 5.01249 5.06657 5.14982 5.17379 5.23558 5.31140 5.33688 5.34691 5.46982 5.64459 6.04754 6.10949 6.29357 6.66858 6.83839 6.94617 7.39951 8.88423 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.026313 B = 0.004601 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.850469 B = 6083.796791 C = 6479.332137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.022 4.022 3 C -0.143 4.143 4 C 0.048 3.952 5 N -0.498 5.498 6 C 0.062 3.938 7 C 0.163 3.837 8 H 0.028 0.972 9 C -0.114 4.114 10 N -0.672 5.672 11 C 0.213 3.787 12 H 0.007 0.993 13 C -0.113 4.113 14 C -0.560 4.560 15 H 0.047 0.953 16 C 0.022 3.978 17 N -0.910 5.910 18 Si 0.951 3.049 19 H -0.280 1.280 20 H -0.279 1.279 21 H -0.270 1.270 22 C -0.265 4.265 23 S 0.163 5.837 24 H 0.065 0.935 25 H 0.092 0.908 26 H 0.051 0.949 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.331 0.669 35 H 0.059 0.941 36 H 0.028 0.972 37 H 0.028 0.972 38 H 0.263 0.737 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.783 13.624 7.302 21.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.044 4.044 3 C -0.202 4.202 4 C -0.231 4.231 5 N -0.212 5.212 6 C -0.069 4.069 7 C 0.050 3.950 8 H 0.045 0.955 9 C -0.173 4.173 10 N -0.304 5.304 11 C 0.104 3.896 12 H 0.025 0.975 13 C -0.172 4.172 14 C -0.599 4.599 15 H 0.065 0.935 16 C -0.178 4.178 17 N -0.549 5.549 18 Si 0.776 3.224 19 H -0.206 1.206 20 H -0.204 1.204 21 H -0.195 1.195 22 C -0.404 4.404 23 S 0.418 5.582 24 H 0.084 0.916 25 H 0.111 0.889 26 H 0.070 0.930 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.150 0.850 35 H 0.078 0.922 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -15.514 13.521 7.348 21.852 hybrid contribution 2.629 -0.184 -0.375 2.662 sum -12.885 13.336 6.973 19.812 Atomic orbital electron populations 1.21912 0.91492 1.02566 1.04025 1.20005 0.97327 0.95825 0.91245 1.21925 1.01033 0.93139 1.04066 1.27731 0.98850 0.95846 1.00645 1.65986 1.14710 1.11798 1.28753 1.20201 1.00790 0.98634 0.87271 1.19682 0.94188 0.90287 0.90849 0.95463 1.21548 1.00305 0.96465 0.98936 1.61090 1.43774 1.21932 1.03626 1.18988 0.85240 0.91243 0.94099 0.97510 1.21511 0.99160 0.98836 0.97651 1.22070 0.95318 0.92861 1.49654 0.93464 1.25640 1.01413 0.96060 0.94707 1.69994 1.25380 1.09975 1.49552 0.85678 0.79592 0.79111 0.77988 1.20584 1.20416 1.19481 1.26974 1.07251 1.01280 1.04930 1.83318 1.47275 1.27341 1.00289 0.91621 0.88885 0.92963 0.88720 0.88819 0.93374 0.91595 0.93637 0.91760 0.92288 0.85013 0.92239 0.95330 0.95303 0.92723 0.79979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.09 71.98 0.65 -1.27 16 2 C -0.02 -0.40 3.35 -11.54 -0.04 -0.44 16 3 C -0.14 -2.07 9.09 71.98 0.65 -1.41 16 4 C 0.05 1.25 6.03 88.52 0.53 1.78 16 5 N -0.50 -16.85 10.25 -179.40 -1.84 -18.69 16 6 C 0.06 2.25 6.06 41.52 0.25 2.51 16 7 C 0.16 6.76 2.99 44.17 0.13 6.89 16 8 H 0.03 1.32 7.77 -2.39 -0.02 1.30 16 9 C -0.11 -4.37 9.25 71.98 0.67 -3.70 16 10 N -0.67 -29.27 5.81 -477.15 -2.77 -32.04 16 11 C 0.21 10.94 2.39 44.17 0.11 11.04 16 12 H 0.01 0.40 6.80 -2.39 -0.02 0.38 16 13 C -0.11 -5.62 9.30 71.98 0.67 -4.95 16 14 C -0.56 -30.95 8.36 25.60 0.21 -30.74 16 15 H 0.05 2.60 7.71 -2.91 -0.02 2.58 16 16 C 0.02 1.23 5.30 84.66 0.45 1.68 16 17 N -0.91 -52.44 11.32 21.45 0.24 -52.20 16 18 Si 0.95 43.91 29.54 68.60 2.03 45.94 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 22 C -0.27 -8.35 10.25 66.78 0.68 -7.67 16 23 S 0.16 3.83 22.53 -56.49 -1.27 2.56 16 24 H 0.06 0.81 7.92 -2.39 -0.02 0.79 16 25 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.86 7.94 -2.39 -0.02 0.84 16 31 H 0.04 1.83 7.18 -2.39 -0.02 1.81 16 32 H 0.06 2.29 7.94 -2.39 -0.02 2.27 16 33 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.33 13.92 6.02 -89.70 -0.54 13.38 16 35 H 0.06 3.23 6.07 -2.39 -0.01 3.22 16 36 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 39 H 0.18 5.53 6.53 -2.91 -0.02 5.51 16 Total: -1.00 -62.38 327.53 1.85 -60.52 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.49 Total: 20.18 kcal Atomic # 6 Polarization: -31.24 SS G_CDS: 4.98 Total: -26.27 kcal Atomic # 7 Polarization: -98.57 SS G_CDS: -4.37 Total: -102.94 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 3.83 SS G_CDS: -1.27 Total: 2.56 kcal Total: -62.38 1.85 -60.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390206208.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.739 kcal (2) G-P(sol) polarization free energy of solvation -62.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds