Wall clock time and date at job start Mon Mar 30 2020 06:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.47001 * 2 1 4 4 C 1.50692 * 109.47336 * 240.00145 * 2 1 3 5 5 N 1.29024 * 124.91728 * 240.00090 * 4 2 1 6 6 C 1.31787 * 117.12867 * 179.97438 * 5 4 2 7 7 C 1.50699 * 122.75191 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47374 * 64.99513 * 7 6 5 9 9 C 1.53004 * 109.46815 * 304.99643 * 7 6 5 10 10 N 1.46897 * 109.46976 * 184.99861 * 7 6 5 11 11 C 1.46896 * 110.99903 * 271.98009 * 10 7 6 12 12 H 1.09000 * 109.47183 * 33.87460 * 11 10 7 13 13 C 1.53004 * 109.47196 * 273.87487 * 11 10 7 14 14 C 1.50703 * 109.47317 * 153.87687 * 11 10 7 15 15 H 1.08000 * 119.99888 * 359.97438 * 14 11 10 16 16 C 1.37880 * 120.00360 * 179.97438 * 14 11 10 17 17 N 1.31518 * 119.99597 * 0.02562 * 16 14 11 18 18 Si 1.86790 * 119.99974 * 179.97438 * 16 14 11 19 19 H 1.48495 * 109.47624 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.46892 * 120.00384 * 18 16 14 21 21 H 1.48500 * 109.47508 * 239.99809 * 18 16 14 22 22 C 1.33643 * 114.49657 * 359.97438 * 6 5 4 23 23 S 1.70976 * 124.91810 * 59.69522 * 4 2 1 24 24 H 1.08995 * 109.46794 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47054 * 59.99963 * 1 2 3 26 26 H 1.08995 * 109.47339 * 300.00217 * 1 2 3 27 27 H 1.09003 * 109.47054 * 120.00036 * 2 1 3 28 28 H 1.09007 * 109.46981 * 60.00011 * 3 2 1 29 29 H 1.08997 * 109.46758 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47464 * 299.99868 * 3 2 1 31 31 H 1.09002 * 109.47092 * 295.50857 * 9 7 6 32 32 H 1.09001 * 109.47249 * 55.51339 * 9 7 6 33 33 H 1.09005 * 109.47042 * 175.51477 * 9 7 6 34 34 H 1.00903 * 111.00054 * 148.02486 * 10 7 6 35 35 H 1.08999 * 109.47103 * 53.78491 * 13 11 10 36 36 H 1.09002 * 109.47212 * 173.78838 * 13 11 10 37 37 H 1.09004 * 109.47112 * 293.78404 * 13 11 10 38 38 H 0.96997 * 119.99686 * 180.02562 * 17 16 14 39 39 H 1.07995 * 126.03531 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2304 5 7 2.7773 -1.7638 -1.2226 6 6 3.1280 -2.2605 -2.3918 7 6 3.9948 -3.4854 -2.5304 8 1 3.4669 -4.3513 -2.1307 9 6 5.2970 -3.2791 -1.7542 10 7 4.3009 -3.7106 -3.9493 11 6 3.2643 -4.5329 -4.5875 12 1 2.2955 -4.3057 -4.1427 13 6 3.5871 -6.0137 -4.3778 14 6 3.2224 -4.2320 -6.0636 15 1 3.8980 -3.5026 -6.4854 16 6 2.3217 -4.8879 -6.8756 17 7 1.4986 -5.7758 -6.3619 18 14 2.2694 -4.5144 -8.7051 19 1 3.2894 -3.4853 -9.0296 20 1 2.5558 -5.7537 -9.4716 21 1 0.9215 -4.0081 -9.0686 22 6 2.6519 -1.5888 -3.4445 23 16 1.6917 -0.2413 -2.8389 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9564 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9564 -0.8899 31 1 5.8629 -2.4634 -2.2042 32 1 5.0671 -3.0332 -0.7174 33 1 5.8890 -4.1938 -1.7879 34 1 5.2129 -4.1279 -4.0607 35 1 3.7263 -6.2082 -3.3144 36 1 2.7642 -6.6217 -4.7538 37 1 4.5008 -6.2662 -4.9160 38 1 0.8652 -6.2375 -6.9332 39 1 2.8223 -1.8315 -4.4830 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390206209.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:26 Heat of formation + Delta-G solvation = 27.922303 kcal Electronic energy + Delta-G solvation = -18583.391423 eV Core-core repulsion = 15845.225506 eV Total energy + Delta-G solvation = -2738.165918 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.64221 -36.66758 -35.21335 -33.03121 -30.58340 -28.89823 -27.29681 -26.86041 -25.13687 -24.84117 -22.62839 -20.61189 -20.12391 -18.97830 -17.00092 -16.28234 -15.40497 -14.93087 -14.62326 -14.43048 -14.16424 -13.81173 -13.61022 -12.89137 -12.63380 -12.38181 -12.27445 -12.08348 -12.03424 -11.56969 -11.44596 -11.38548 -11.20299 -11.02362 -10.93876 -10.82202 -10.59151 -10.39298 -10.13729 -9.85041 -9.23305 -9.00955 -8.88130 -8.39956 -8.15606 -7.34689 -6.01046 -4.04596 1.26151 1.84162 2.25814 3.29488 3.31013 3.37804 3.42242 4.17879 4.42027 4.81208 4.99040 5.01551 5.30894 5.35210 5.46976 5.48779 5.65288 5.67326 5.70982 5.76619 5.86019 6.04675 6.10098 6.12535 6.22979 6.32755 6.43741 6.53564 6.67945 6.78724 6.83038 7.08868 7.36149 7.71660 7.85387 8.20455 8.27596 8.50130 8.58057 9.03228 9.61279 11.06309 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.022627 B = 0.005345 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.139250 B = 5237.434325 C = 5901.306050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.015 4.015 3 C -0.145 4.145 4 C 0.037 3.963 5 N -0.467 5.467 6 C 0.065 3.935 7 C 0.160 3.840 8 H 0.054 0.946 9 C -0.143 4.143 10 N -0.681 5.681 11 C 0.210 3.790 12 H 0.034 0.966 13 C -0.166 4.166 14 C -0.498 4.498 15 H 0.063 0.937 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.894 3.106 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.285 1.285 22 C -0.194 4.194 23 S 0.075 5.925 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.095 0.905 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.335 0.665 35 H 0.004 0.996 36 H 0.084 0.916 37 H 0.031 0.969 38 H 0.259 0.741 39 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.635 10.851 11.339 15.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.037 4.037 3 C -0.203 4.203 4 C -0.242 4.242 5 N -0.181 5.181 6 C -0.065 4.065 7 C 0.046 3.954 8 H 0.071 0.929 9 C -0.201 4.201 10 N -0.312 5.312 11 C 0.102 3.898 12 H 0.052 0.948 13 C -0.226 4.226 14 C -0.536 4.536 15 H 0.082 0.918 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.723 3.277 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.212 1.212 22 C -0.332 4.332 23 S 0.328 5.672 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.113 0.887 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.153 0.847 35 H 0.023 0.977 36 H 0.103 0.897 37 H 0.050 0.950 38 H 0.069 0.931 39 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -0.198 11.891 11.102 16.270 hybrid contribution 0.546 -1.673 -0.860 1.959 sum 0.348 10.219 10.242 14.472 Atomic orbital electron populations 1.21914 0.93590 1.02661 1.02309 1.19696 0.95785 0.95131 0.93104 1.21903 1.01657 0.94462 1.02308 1.26781 1.01520 0.97477 0.98454 1.65924 1.12961 1.10014 1.29209 1.20231 1.01048 0.99467 0.85784 1.19694 0.93345 0.91462 0.90876 0.92871 1.21878 0.96441 1.01451 1.00298 1.60617 1.06579 1.54431 1.09607 1.19260 0.89518 0.86745 0.94247 0.94826 1.22416 1.02047 1.02426 0.95696 1.21166 1.18516 1.22135 0.91817 0.91841 1.24951 0.95607 0.95174 0.98645 1.69914 1.21748 1.26536 1.35199 0.86496 0.77784 0.78089 0.85366 1.19716 1.21199 1.21168 1.27201 1.02329 0.97329 1.06372 1.83710 1.50236 1.31132 1.02149 0.92054 0.92191 0.91613 0.88663 0.91640 0.92169 0.92216 0.92336 0.91906 0.92782 0.84725 0.97657 0.89690 0.94977 0.93123 0.78613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.09 37.16 0.34 -1.13 16 2 C -0.02 -0.17 3.35 -91.77 -0.31 -0.48 16 3 C -0.14 -1.37 9.09 37.16 0.34 -1.03 16 4 C 0.04 0.56 6.03 -13.46 -0.08 0.48 16 5 N -0.47 -8.39 10.26 -8.06 -0.08 -8.47 16 6 C 0.06 1.25 5.94 -84.22 -0.50 0.75 16 7 C 0.16 3.03 2.92 -68.86 -0.20 2.83 16 8 H 0.05 1.09 7.19 -51.93 -0.37 0.72 16 9 C -0.14 -2.24 9.08 37.16 0.34 -1.90 16 10 N -0.68 -14.05 5.09 -102.17 -0.52 -14.57 16 11 C 0.21 5.13 1.68 -68.86 -0.12 5.01 16 12 H 0.03 0.93 7.52 -51.93 -0.39 0.54 16 13 C -0.17 -3.97 8.84 37.16 0.33 -3.64 16 14 C -0.50 -13.29 8.84 -34.44 -0.30 -13.60 16 15 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 16 C 0.06 1.56 5.30 -17.82 -0.09 1.46 16 17 N -0.89 -25.38 11.39 55.43 0.63 -24.74 16 18 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 C -0.19 -3.75 10.05 29.12 0.29 -3.46 16 23 S 0.07 1.16 22.53 -107.50 -2.42 -1.26 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.60 7.92 -51.93 -0.41 0.19 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.56 7.94 -51.93 -0.41 0.15 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.96 7.96 -51.93 -0.41 0.55 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.33 6.50 8.05 -39.29 -0.32 6.18 16 35 H 0.00 0.10 7.50 -51.93 -0.39 -0.29 16 36 H 0.08 2.25 6.26 -51.93 -0.33 1.92 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 39 H 0.20 4.20 7.14 -52.49 -0.37 3.83 16 LS Contribution 329.09 15.07 4.96 4.96 Total: -1.00 -28.41 329.09 -8.76 -37.17 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -6.33 Total: 5.42 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: 0.03 Total: -14.70 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: 0.03 Total: -47.78 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.42 Total: -1.26 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.41 -8.76 -37.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390206209.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.094 kcal (2) G-P(sol) polarization free energy of solvation -28.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds