Wall clock time and date at job start Mon Mar 30 2020 06:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.47001 * 2 1 4 4 C 1.50692 * 109.47336 * 240.00145 * 2 1 3 5 5 N 1.29024 * 124.91728 * 240.00090 * 4 2 1 6 6 C 1.31787 * 117.12867 * 179.97438 * 5 4 2 7 7 C 1.50699 * 122.75191 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47374 * 64.99513 * 7 6 5 9 9 C 1.53004 * 109.46815 * 304.99643 * 7 6 5 10 10 N 1.46897 * 109.46976 * 184.99861 * 7 6 5 11 11 C 1.46896 * 110.99903 * 271.98009 * 10 7 6 12 12 H 1.09000 * 109.47183 * 33.87460 * 11 10 7 13 13 C 1.53004 * 109.47196 * 273.87487 * 11 10 7 14 14 C 1.50703 * 109.47317 * 153.87687 * 11 10 7 15 15 H 1.08000 * 119.99888 * 359.97438 * 14 11 10 16 16 C 1.37880 * 120.00360 * 179.97438 * 14 11 10 17 17 N 1.31518 * 119.99597 * 0.02562 * 16 14 11 18 18 Si 1.86790 * 119.99974 * 179.97438 * 16 14 11 19 19 H 1.48495 * 109.47624 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.46892 * 120.00384 * 18 16 14 21 21 H 1.48500 * 109.47508 * 239.99809 * 18 16 14 22 22 C 1.33643 * 114.49657 * 359.97438 * 6 5 4 23 23 S 1.70976 * 124.91810 * 59.69522 * 4 2 1 24 24 H 1.08995 * 109.46794 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47054 * 59.99963 * 1 2 3 26 26 H 1.08995 * 109.47339 * 300.00217 * 1 2 3 27 27 H 1.09003 * 109.47054 * 120.00036 * 2 1 3 28 28 H 1.09007 * 109.46981 * 60.00011 * 3 2 1 29 29 H 1.08997 * 109.46758 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47464 * 299.99868 * 3 2 1 31 31 H 1.09002 * 109.47092 * 295.50857 * 9 7 6 32 32 H 1.09001 * 109.47249 * 55.51339 * 9 7 6 33 33 H 1.09005 * 109.47042 * 175.51477 * 9 7 6 34 34 H 1.00903 * 111.00054 * 148.02486 * 10 7 6 35 35 H 1.08999 * 109.47103 * 53.78491 * 13 11 10 36 36 H 1.09002 * 109.47212 * 173.78838 * 13 11 10 37 37 H 1.09004 * 109.47112 * 293.78404 * 13 11 10 38 38 H 0.96997 * 119.99686 * 180.02562 * 17 16 14 39 39 H 1.07995 * 126.03531 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2304 5 7 2.7773 -1.7638 -1.2226 6 6 3.1280 -2.2605 -2.3918 7 6 3.9948 -3.4854 -2.5304 8 1 3.4669 -4.3513 -2.1307 9 6 5.2970 -3.2791 -1.7542 10 7 4.3009 -3.7106 -3.9493 11 6 3.2643 -4.5329 -4.5875 12 1 2.2955 -4.3057 -4.1427 13 6 3.5871 -6.0137 -4.3778 14 6 3.2224 -4.2320 -6.0636 15 1 3.8980 -3.5026 -6.4854 16 6 2.3217 -4.8879 -6.8756 17 7 1.4986 -5.7758 -6.3619 18 14 2.2694 -4.5144 -8.7051 19 1 3.2894 -3.4853 -9.0296 20 1 2.5558 -5.7537 -9.4716 21 1 0.9215 -4.0081 -9.0686 22 6 2.6519 -1.5888 -3.4445 23 16 1.6917 -0.2413 -2.8389 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9564 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9564 -0.8899 31 1 5.8629 -2.4634 -2.2042 32 1 5.0671 -3.0332 -0.7174 33 1 5.8890 -4.1938 -1.7879 34 1 5.2129 -4.1279 -4.0607 35 1 3.7263 -6.2082 -3.3144 36 1 2.7642 -6.6217 -4.7538 37 1 4.5008 -6.2662 -4.9160 38 1 0.8652 -6.2375 -6.9332 39 1 2.8223 -1.8315 -4.4830 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390206209.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:25 Heat of formation + Delta-G solvation = 10.869966 kcal Electronic energy + Delta-G solvation = -18584.130868 eV Core-core repulsion = 15845.225506 eV Total energy + Delta-G solvation = -2738.905363 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.02254 -38.22921 -36.37708 -34.87352 -32.37554 -30.25345 -28.58745 -28.05499 -27.21504 -26.12791 -23.93336 -22.34365 -21.45156 -20.39949 -18.41457 -18.22579 -16.87424 -16.61293 -16.08768 -15.71624 -15.49884 -15.24330 -15.04127 -14.22726 -14.04564 -13.84119 -13.69497 -13.37429 -13.23124 -13.03934 -12.99081 -12.83502 -12.53766 -12.46606 -12.33212 -12.16507 -12.08636 -12.02312 -11.83249 -11.71159 -11.00963 -10.56469 -10.50716 -10.23536 -9.52173 -9.07831 -8.10098 -6.20486 -0.08581 0.52923 0.89395 1.40652 1.43161 1.54679 1.90360 2.42877 2.96789 3.19423 3.61550 3.93197 4.07077 4.17300 4.25021 4.30804 4.43869 4.67319 4.73830 4.77418 4.80785 4.84598 4.91061 4.93006 4.94547 5.01181 5.07375 5.10452 5.23694 5.32161 5.34103 5.34649 5.45796 5.69639 5.80766 6.25174 6.58507 6.80683 6.90223 6.95173 7.49625 8.96333 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.022627 B = 0.005345 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.139250 B = 5237.434325 C = 5901.306050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.018 4.018 3 C -0.141 4.141 4 C 0.047 3.953 5 N -0.491 5.491 6 C 0.058 3.942 7 C 0.158 3.842 8 H 0.034 0.966 9 C -0.130 4.130 10 N -0.676 5.676 11 C 0.222 3.778 12 H -0.004 1.004 13 C -0.155 4.155 14 C -0.508 4.508 15 H 0.058 0.942 16 C 0.010 3.990 17 N -0.923 5.923 18 Si 0.957 3.043 19 H -0.267 1.267 20 H -0.282 1.282 21 H -0.284 1.284 22 C -0.237 4.237 23 S 0.121 5.879 24 H 0.046 0.954 25 H 0.059 0.941 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.343 0.657 35 H 0.023 0.977 36 H 0.056 0.944 37 H 0.036 0.964 38 H 0.259 0.741 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.835 12.473 12.328 17.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.040 4.040 3 C -0.199 4.199 4 C -0.232 4.232 5 N -0.205 5.205 6 C -0.073 4.073 7 C 0.045 3.955 8 H 0.052 0.948 9 C -0.188 4.188 10 N -0.308 5.308 11 C 0.114 3.886 12 H 0.014 0.986 13 C -0.214 4.214 14 C -0.547 4.547 15 H 0.076 0.924 16 C -0.188 4.188 17 N -0.563 5.563 18 Si 0.783 3.217 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.210 1.210 22 C -0.375 4.375 23 S 0.376 5.624 24 H 0.065 0.935 25 H 0.079 0.921 26 H 0.114 0.886 27 H 0.118 0.882 28 H 0.112 0.888 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.162 0.838 35 H 0.042 0.958 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.016 13.529 12.091 18.144 hybrid contribution 0.433 -2.106 -1.071 2.402 sum 0.449 11.423 11.020 15.878 Atomic orbital electron populations 1.21929 0.92197 1.02244 1.03882 1.19974 0.96814 0.96059 0.91153 1.21904 1.01287 0.92900 1.03827 1.27680 0.99340 0.96312 0.99860 1.65995 1.14712 1.11372 1.28468 1.20319 1.01015 0.99504 0.86412 1.19732 0.94981 0.90943 0.89837 0.94791 1.21776 0.94689 1.02452 0.99872 1.60467 1.05931 1.53406 1.10960 1.18924 0.88914 0.87517 0.93295 0.98588 1.22243 1.00988 1.01415 0.96792 1.21418 1.18341 1.21796 0.93096 0.92380 1.25693 0.95323 0.95066 1.02727 1.70046 1.22343 1.27400 1.36558 0.85518 0.77726 0.77998 0.80442 1.19104 1.20749 1.21039 1.27016 1.05008 1.00177 1.05334 1.83415 1.48679 1.28784 1.01562 0.93476 0.92147 0.88572 0.88217 0.88756 0.92789 0.92111 0.92055 0.91346 0.91013 0.83830 0.95788 0.92466 0.94483 0.93157 0.81382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.09 71.98 0.65 -1.86 16 2 C -0.02 -0.37 3.35 -11.54 -0.04 -0.41 16 3 C -0.14 -2.22 9.09 71.98 0.65 -1.56 16 4 C 0.05 1.39 6.03 88.52 0.53 1.93 16 5 N -0.49 -17.47 10.26 -179.41 -1.84 -19.31 16 6 C 0.06 2.28 5.94 41.52 0.25 2.52 16 7 C 0.16 6.08 2.92 44.17 0.13 6.21 16 8 H 0.03 1.44 7.19 -2.39 -0.02 1.42 16 9 C -0.13 -3.94 9.08 71.98 0.65 -3.29 16 10 N -0.68 -28.39 5.09 -477.16 -2.43 -30.82 16 11 C 0.22 11.19 1.68 44.17 0.07 11.26 16 12 H 0.00 -0.22 7.52 -2.39 -0.02 -0.24 16 13 C -0.15 -7.51 8.84 71.98 0.64 -6.87 16 14 C -0.51 -27.72 8.84 25.60 0.23 -27.49 16 15 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 16 C 0.01 0.56 5.30 84.65 0.45 1.01 16 17 N -0.92 -53.55 11.39 21.45 0.24 -53.31 16 18 Si 0.96 43.93 29.54 68.60 2.03 45.95 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 21 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 22 C -0.24 -9.43 10.05 66.78 0.67 -8.76 16 23 S 0.12 3.71 22.53 -56.49 -1.27 2.43 16 24 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.06 1.05 7.92 -2.39 -0.02 1.03 16 26 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 0.95 7.94 -2.39 -0.02 0.93 16 31 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.07 2.01 7.96 -2.39 -0.02 1.99 16 33 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 34 H 0.34 13.25 8.05 -89.69 -0.72 12.53 16 35 H 0.02 1.02 7.50 -2.39 -0.02 1.01 16 36 H 0.06 3.10 6.26 -2.39 -0.01 3.09 16 37 H 0.04 1.70 8.14 -2.39 -0.02 1.69 16 38 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 39 H 0.17 7.63 7.14 -2.91 -0.02 7.61 16 Total: -1.00 -62.28 329.09 1.92 -60.36 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.30 Total: 22.00 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: 4.89 Total: -27.31 kcal Atomic # 7 Polarization: -99.42 SS G_CDS: -4.02 Total: -103.44 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: 3.71 SS G_CDS: -1.27 Total: 2.43 kcal Total: -62.28 1.92 -60.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390206209.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.229 kcal (2) G-P(sol) polarization free energy of solvation -62.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds