Wall clock time and date at job start Mon Mar 30 2020 06:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81407 * 102.99962 * 2 1 4 4 H 1.09003 * 110.05187 * 54.95957 * 3 2 1 5 5 C 1.54267 * 110.03206 * 293.54637 * 3 2 1 6 6 C 1.54888 * 104.19585 * 217.10260 * 5 3 2 7 7 C 1.54895 * 102.74672 * 37.94305 * 6 5 3 8 8 C 1.53870 * 110.03471 * 176.37829 * 3 2 1 9 9 H 1.08998 * 110.03261 * 238.57219 * 8 3 2 10 10 N 1.46902 * 110.03109 * 0.02562 * 8 3 2 11 11 C 1.46901 * 111.00076 * 275.11145 * 10 8 3 12 12 C 1.53002 * 109.47429 * 180.02562 * 11 10 8 13 13 H 1.09003 * 109.46863 * 304.99848 * 12 11 10 14 14 C 1.47198 * 109.47163 * 65.00056 * 12 11 10 15 15 N 5.96896 * 167.92487 * 137.71016 * 2 1 3 16 16 C 1.53002 * 109.47082 * 185.00450 * 12 11 10 17 17 C 1.50697 * 109.46747 * 174.99885 * 16 12 11 18 18 H 1.08000 * 120.00300 * 359.97438 * 17 16 12 19 19 C 1.37883 * 119.99750 * 179.97438 * 17 16 12 20 20 N 1.31514 * 119.99801 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99916 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47261 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46924 * 119.99731 * 21 19 17 24 24 H 1.48497 * 109.46914 * 239.99736 * 21 19 17 25 25 H 1.08997 * 109.47589 * 60.00195 * 1 2 3 26 26 H 1.09005 * 109.47135 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47410 * 299.99690 * 1 2 3 28 28 H 1.09001 * 110.48569 * 335.78195 * 5 3 2 29 29 H 1.09005 * 110.48505 * 98.42127 * 5 3 2 30 30 H 1.08995 * 110.75349 * 156.25526 * 6 5 3 31 31 H 1.08993 * 110.75665 * 279.44670 * 6 5 3 32 32 H 1.09005 * 110.48511 * 80.73758 * 7 6 5 33 33 H 1.08996 * 110.48354 * 203.37560 * 7 6 5 34 34 H 1.00899 * 111.00511 * 39.06652 * 10 8 3 35 35 H 1.09006 * 109.47266 * 300.00340 * 11 10 8 36 36 H 1.09005 * 109.46650 * 59.99997 * 11 10 8 37 37 H 1.09000 * 109.46590 * 294.99498 * 16 12 11 38 38 H 1.08990 * 109.47539 * 54.99898 * 16 12 11 39 39 H 0.97001 * 119.99658 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7332 2.2640 0.8384 5 6 1.7767 2.4127 -1.3287 6 6 2.8890 3.4442 -1.6416 7 6 4.1742 2.7101 -1.1850 8 6 3.7463 1.9567 0.0913 9 1 3.9974 2.5448 0.9740 10 7 4.4129 0.6490 0.1504 11 6 4.4592 0.1435 1.5290 12 6 5.1596 -1.2167 1.5503 13 1 4.6610 -1.8930 0.8559 14 6 6.5661 -1.0507 1.1490 15 7 7.6508 -0.9237 0.8402 16 6 5.0977 -1.8001 2.9633 17 6 5.6777 -3.1910 2.9582 18 1 6.0525 -3.6165 2.0391 19 6 5.7299 -3.9204 4.1272 20 7 5.2739 -3.4020 5.2466 21 14 6.4494 -5.6442 4.1211 22 1 6.8909 -5.9915 2.7464 23 1 7.6127 -5.6983 5.0424 24 1 5.4172 -6.6130 4.5697 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.7198 1.6621 -2.1170 29 1 0.8159 2.9128 -1.2067 30 1 2.9261 3.6602 -2.7093 31 1 2.7393 4.3593 -1.0688 32 1 4.5045 2.0075 -1.9502 33 1 4.9630 3.4273 -0.9584 34 1 3.9634 -0.0142 -0.4629 35 1 5.0102 0.8453 2.1551 36 1 3.4439 0.0358 1.9107 37 1 5.6719 -1.1695 3.6421 38 1 4.0602 -1.8403 3.2948 39 1 5.3103 -3.9153 6.0688 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390452942.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:28 Heat of formation + Delta-G solvation = 7.356758 kcal Electronic energy + Delta-G solvation = -18298.550625 eV Core-core repulsion = 15559.492918 eV Total energy + Delta-G solvation = -2739.057707 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.90416 -36.65306 -34.42815 -33.22402 -31.26853 -29.52245 -28.37921 -27.66104 -25.56227 -22.71776 -21.70576 -20.89036 -20.39791 -17.18204 -16.62790 -16.26419 -16.01387 -15.09095 -14.62212 -14.32888 -14.10865 -14.04203 -13.67662 -13.52928 -13.04997 -12.81304 -12.43409 -12.24007 -11.89581 -11.60649 -11.56416 -11.43283 -11.26118 -11.14838 -11.05593 -10.97790 -10.80392 -10.60666 -10.43394 -10.14309 -9.81495 -9.45310 -9.13113 -8.40592 -8.30915 -7.61422 -6.03772 -4.06013 1.54786 2.45661 3.32327 3.40327 3.45630 3.83466 3.92985 4.19971 4.29368 4.45033 4.56158 4.82887 5.01385 5.03416 5.06713 5.15231 5.21438 5.30698 5.34196 5.34557 5.47122 5.61111 5.63775 5.69977 5.75419 5.83120 5.92518 6.04277 6.16641 6.28762 6.50798 6.61358 7.18049 7.52341 7.56242 7.62591 7.92328 8.30763 8.67315 8.99030 9.58914 11.07269 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.024596 B = 0.004699 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.142522 B = 5956.820912 C = 6697.420592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.231 6.231 3 C -0.100 4.100 4 H 0.088 0.912 5 C -0.118 4.118 6 C -0.123 4.123 7 C -0.111 4.111 8 C 0.106 3.894 9 H 0.089 0.911 10 N -0.678 5.678 11 C 0.061 3.939 12 C 0.012 3.988 13 H 0.099 0.901 14 C 0.256 3.744 15 N -0.482 5.482 16 C 0.033 3.967 17 C -0.523 4.523 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.892 5.892 21 Si 0.890 3.110 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.283 1.283 25 H 0.071 0.929 26 H 0.100 0.900 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.347 0.653 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.025 0.975 38 H 0.039 0.961 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.349 12.958 -11.621 21.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S -0.004 6.004 3 C -0.231 4.231 4 H 0.106 0.894 5 C -0.157 4.157 6 C -0.162 4.162 7 C -0.149 4.149 8 C -0.007 4.007 9 H 0.107 0.893 10 N -0.312 5.312 11 C -0.069 4.069 12 C -0.011 4.011 13 H 0.116 0.884 14 C -0.061 4.061 15 N -0.159 5.159 16 C -0.006 4.006 17 C -0.561 4.561 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.718 3.282 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.209 1.209 25 H 0.090 0.910 26 H 0.119 0.881 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.172 0.828 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.043 0.957 38 H 0.057 0.943 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.421 12.447 -11.864 19.608 hybrid contribution -1.947 -0.316 0.500 2.034 sum -11.368 12.132 -11.364 20.139 Atomic orbital electron populations 1.23467 0.95935 1.06379 1.04414 1.87066 1.06273 1.09566 1.97489 1.24769 1.02484 0.94538 1.01265 0.89367 1.22736 0.98514 0.98670 0.95788 1.22479 0.94815 0.97707 1.01168 1.22376 0.96926 0.98707 0.96923 1.22082 0.86715 0.92318 0.99535 0.89314 1.60797 1.56126 1.04203 1.10109 1.22265 1.00453 0.95483 0.88741 1.19183 0.82992 0.96207 1.02670 0.88352 1.28914 0.94836 0.91156 0.91174 1.80921 1.12983 1.10672 1.11368 1.19149 0.98789 0.95691 0.86933 1.21203 1.40470 0.99575 0.94836 0.92487 1.24944 0.95283 0.98213 0.95532 1.69954 1.46510 1.37408 0.99262 0.86558 0.78876 0.84563 0.78227 1.19665 1.21023 1.20911 0.90960 0.88142 0.90739 0.90265 0.91790 0.91222 0.91473 0.90468 0.91091 0.82825 0.91001 0.91597 0.95709 0.94312 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 10.60 101.05 1.07 -0.08 16 2 S -0.23 -2.65 16.83 -107.50 -1.81 -4.46 16 3 C -0.10 -0.98 3.37 -25.62 -0.09 -1.07 16 4 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 5 C -0.12 -0.95 6.20 -25.07 -0.16 -1.11 16 6 C -0.12 -0.94 6.91 -24.74 -0.17 -1.12 16 7 C -0.11 -1.08 6.53 -25.07 -0.16 -1.25 16 8 C 0.11 1.18 3.22 -66.60 -0.21 0.96 16 9 H 0.09 0.99 7.86 -51.93 -0.41 0.58 16 10 N -0.68 -9.44 5.75 -105.54 -0.61 -10.05 16 11 C 0.06 0.96 4.33 -3.82 -0.02 0.94 16 12 C 0.01 0.22 2.35 -93.41 -0.22 0.00 16 13 H 0.10 1.84 8.14 -51.93 -0.42 1.41 16 14 C 0.26 5.58 13.67 -20.79 -0.28 5.30 16 15 N -0.48 -11.33 18.53 42.11 0.78 -10.55 16 16 C 0.03 0.79 4.42 -27.88 -0.12 0.67 16 17 C -0.52 -14.25 8.60 -34.44 -0.30 -14.55 16 18 H 0.06 1.56 7.59 -52.49 -0.40 1.16 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 21 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 26 H 0.10 0.84 8.14 -51.92 -0.42 0.42 16 27 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 28 H 0.08 0.69 7.81 -51.93 -0.41 0.28 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.83 8.05 -51.93 -0.42 0.41 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.35 4.85 6.23 -23.72 -0.15 4.70 16 35 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 36 H 0.07 1.01 6.53 -51.93 -0.34 0.67 16 37 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 330.91 15.07 4.99 4.99 Total: -1.00 -30.27 330.91 -8.01 -38.28 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -6.32 Total: 0.00 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -0.76 Total: -9.66 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.91 Total: -45.80 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -2.65 SS G_CDS: -1.81 Total: -4.46 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.27 -8.01 -38.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390452942.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.634 kcal (2) G-P(sol) polarization free energy of solvation -30.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds