Wall clock time and date at job start Mon Mar 30 2020 06:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81407 * 102.99962 * 2 1 4 4 H 1.09003 * 110.05187 * 54.95957 * 3 2 1 5 5 C 1.54267 * 110.03206 * 293.54637 * 3 2 1 6 6 C 1.54888 * 104.19585 * 217.10260 * 5 3 2 7 7 C 1.54895 * 102.74672 * 37.94305 * 6 5 3 8 8 C 1.53870 * 110.03471 * 176.37829 * 3 2 1 9 9 H 1.08998 * 110.03261 * 238.57219 * 8 3 2 10 10 N 1.46902 * 110.03109 * 0.02562 * 8 3 2 11 11 C 1.46901 * 111.00076 * 275.11145 * 10 8 3 12 12 C 1.53002 * 109.47429 * 180.02562 * 11 10 8 13 13 H 1.09003 * 109.46863 * 304.99848 * 12 11 10 14 14 C 1.47198 * 109.47163 * 65.00056 * 12 11 10 15 15 N 5.96896 * 167.92487 * 137.71016 * 2 1 3 16 16 C 1.53002 * 109.47082 * 185.00450 * 12 11 10 17 17 C 1.50697 * 109.46747 * 174.99885 * 16 12 11 18 18 H 1.08000 * 120.00300 * 359.97438 * 17 16 12 19 19 C 1.37883 * 119.99750 * 179.97438 * 17 16 12 20 20 N 1.31514 * 119.99801 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99916 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47261 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46924 * 119.99731 * 21 19 17 24 24 H 1.48497 * 109.46914 * 239.99736 * 21 19 17 25 25 H 1.08997 * 109.47589 * 60.00195 * 1 2 3 26 26 H 1.09005 * 109.47135 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47410 * 299.99690 * 1 2 3 28 28 H 1.09001 * 110.48569 * 335.78195 * 5 3 2 29 29 H 1.09005 * 110.48505 * 98.42127 * 5 3 2 30 30 H 1.08995 * 110.75349 * 156.25526 * 6 5 3 31 31 H 1.08993 * 110.75665 * 279.44670 * 6 5 3 32 32 H 1.09005 * 110.48511 * 80.73758 * 7 6 5 33 33 H 1.08996 * 110.48354 * 203.37560 * 7 6 5 34 34 H 1.00899 * 111.00511 * 39.06652 * 10 8 3 35 35 H 1.09006 * 109.47266 * 300.00340 * 11 10 8 36 36 H 1.09005 * 109.46650 * 59.99997 * 11 10 8 37 37 H 1.09000 * 109.46590 * 294.99498 * 16 12 11 38 38 H 1.08990 * 109.47539 * 54.99898 * 16 12 11 39 39 H 0.97001 * 119.99658 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7332 2.2640 0.8384 5 6 1.7767 2.4127 -1.3287 6 6 2.8890 3.4442 -1.6416 7 6 4.1742 2.7101 -1.1850 8 6 3.7463 1.9567 0.0913 9 1 3.9974 2.5448 0.9740 10 7 4.4129 0.6490 0.1504 11 6 4.4592 0.1435 1.5290 12 6 5.1596 -1.2167 1.5503 13 1 4.6610 -1.8930 0.8559 14 6 6.5661 -1.0507 1.1490 15 7 7.6508 -0.9237 0.8402 16 6 5.0977 -1.8001 2.9633 17 6 5.6777 -3.1910 2.9582 18 1 6.0525 -3.6165 2.0391 19 6 5.7299 -3.9204 4.1272 20 7 5.2739 -3.4020 5.2466 21 14 6.4494 -5.6442 4.1211 22 1 6.8909 -5.9915 2.7464 23 1 7.6127 -5.6983 5.0424 24 1 5.4172 -6.6130 4.5697 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.7198 1.6621 -2.1170 29 1 0.8159 2.9128 -1.2067 30 1 2.9261 3.6602 -2.7093 31 1 2.7393 4.3593 -1.0688 32 1 4.5045 2.0075 -1.9502 33 1 4.9630 3.4273 -0.9584 34 1 3.9634 -0.0142 -0.4629 35 1 5.0102 0.8453 2.1551 36 1 3.4439 0.0358 1.9107 37 1 5.6719 -1.1695 3.6421 38 1 4.0602 -1.8403 3.2948 39 1 5.3103 -3.9153 6.0688 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390452942.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:27 Heat of formation + Delta-G solvation = -9.955689 kcal Electronic energy + Delta-G solvation = -18299.301349 eV Core-core repulsion = 15559.492918 eV Total energy + Delta-G solvation = -2739.808431 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.83814 -38.20185 -35.94359 -35.03777 -32.92682 -30.24563 -29.09017 -29.04066 -27.02286 -24.22765 -23.49449 -21.58738 -21.28719 -18.68021 -18.33672 -17.44199 -17.08425 -16.55734 -15.94201 -15.54149 -15.35979 -14.90490 -14.72549 -14.57732 -14.24958 -14.18638 -13.78427 -13.70043 -13.41589 -13.17018 -13.00586 -12.74229 -12.52058 -12.47688 -12.23714 -12.14284 -11.99873 -11.89819 -11.78789 -11.50900 -11.35915 -11.06250 -10.61392 -10.54416 -9.37763 -8.51153 -8.18222 -6.26287 0.76400 1.39412 1.42114 1.53148 1.70183 2.07255 2.14275 2.42542 3.16757 3.22263 3.37110 3.56200 3.70231 4.12488 4.23906 4.36525 4.39090 4.41783 4.46157 4.50095 4.53719 4.57809 4.77484 4.83134 4.92556 4.96060 4.98595 5.03715 5.14418 5.19069 5.29090 5.47648 5.48753 5.63779 5.80565 6.07156 6.23692 6.47144 6.83777 6.93217 7.41966 8.93054 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.024596 B = 0.004699 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.142522 B = 5956.820912 C = 6697.420592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.292 6.292 3 C -0.085 4.085 4 H 0.094 0.906 5 C -0.111 4.111 6 C -0.114 4.114 7 C -0.110 4.110 8 C 0.100 3.900 9 H 0.088 0.912 10 N -0.685 5.685 11 C 0.076 3.924 12 C 0.023 3.977 13 H 0.109 0.891 14 C 0.265 3.735 15 N -0.512 5.512 16 C 0.042 3.958 17 C -0.538 4.538 18 H 0.052 0.948 19 C 0.012 3.988 20 N -0.923 5.923 21 Si 0.949 3.051 22 H -0.270 1.270 23 H -0.284 1.284 24 H -0.272 1.272 25 H 0.088 0.912 26 H 0.102 0.898 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.348 0.652 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.001 0.999 38 H 0.033 0.967 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.581 13.589 -12.591 22.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.065 6.065 3 C -0.216 4.216 4 H 0.112 0.888 5 C -0.151 4.151 6 C -0.153 4.153 7 C -0.148 4.148 8 C -0.012 4.012 9 H 0.106 0.894 10 N -0.320 5.320 11 C -0.054 4.054 12 C 0.001 3.999 13 H 0.127 0.873 14 C -0.051 4.051 15 N -0.190 5.190 16 C 0.003 3.997 17 C -0.576 4.576 18 H 0.070 0.930 19 C -0.186 4.186 20 N -0.563 5.563 21 Si 0.774 3.226 22 H -0.195 1.195 23 H -0.210 1.210 24 H -0.197 1.197 25 H 0.107 0.893 26 H 0.120 0.880 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.172 0.828 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.019 0.981 38 H 0.052 0.948 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.664 13.088 -12.848 21.215 hybrid contribution -1.589 -0.489 0.796 1.843 sum -12.253 12.599 -12.051 21.310 Atomic orbital electron populations 1.23461 0.92881 1.06879 1.05509 1.87235 1.09677 1.11926 1.97640 1.24690 1.01268 0.93024 1.02624 0.88773 1.22698 0.99413 0.98526 0.94443 1.22452 0.93111 0.97674 1.02050 1.22350 0.98168 0.98474 0.95824 1.22203 0.87742 0.90863 1.00344 0.89364 1.60759 1.57246 1.05335 1.08649 1.22017 1.00043 0.93176 0.90166 1.19099 0.82243 0.98489 1.00043 0.87287 1.29335 0.95134 0.90193 0.90417 1.80913 1.13843 1.11904 1.12327 1.18947 0.97591 0.94131 0.89049 1.21571 1.40296 1.01077 0.94654 0.92962 1.25703 0.95753 1.01847 0.95345 1.70045 1.47596 1.38872 0.99807 0.85638 0.78277 0.80514 0.78122 1.19453 1.20999 1.19713 0.89343 0.87972 0.90116 0.90770 0.90087 0.90074 0.90272 0.91691 0.91023 0.82764 0.91447 0.90928 0.98104 0.94825 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 10.60 113.37 1.20 -0.62 16 2 S -0.29 -6.35 16.83 -56.49 -0.95 -7.30 16 3 C -0.09 -1.52 3.37 31.32 0.11 -1.42 16 4 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 5 C -0.11 -1.51 6.20 31.67 0.20 -1.32 16 6 C -0.11 -1.45 6.91 31.89 0.22 -1.23 16 7 C -0.11 -1.98 6.53 31.67 0.21 -1.77 16 8 C 0.10 2.10 3.22 45.64 0.15 2.25 16 9 H 0.09 1.86 7.86 -2.39 -0.02 1.84 16 10 N -0.69 -18.66 5.75 -487.82 -2.80 -21.46 16 11 C 0.08 2.39 4.33 86.30 0.37 2.76 16 12 C 0.02 0.90 2.35 -12.60 -0.03 0.87 16 13 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 14 C 0.27 11.59 13.67 89.45 1.22 12.82 16 15 N -0.51 -24.13 18.53 19.99 0.37 -23.76 16 16 C 0.04 2.01 4.42 29.85 0.13 2.15 16 17 C -0.54 -29.49 8.60 25.60 0.22 -29.27 16 18 H 0.05 2.86 7.59 -2.91 -0.02 2.83 16 19 C 0.01 0.69 5.46 84.66 0.46 1.15 16 20 N -0.92 -53.97 13.29 21.45 0.28 -53.68 16 21 Si 0.95 44.37 29.54 68.60 2.03 46.39 16 22 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 H 0.09 1.07 8.12 -2.39 -0.02 1.05 16 26 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 1.12 7.81 -2.39 -0.02 1.10 16 29 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 1.34 8.05 -2.38 -0.02 1.32 16 33 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.35 9.53 6.23 -99.60 -0.62 8.91 16 35 H 0.07 2.16 8.07 -2.38 -0.02 2.14 16 36 H 0.07 2.19 6.53 -2.38 -0.02 2.17 16 37 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 38 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -64.06 330.91 3.79 -60.27 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.40 Total: 13.16 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: 4.46 Total: -13.62 kcal Atomic # 7 Polarization: -96.76 SS G_CDS: -2.15 Total: -98.91 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: -6.35 SS G_CDS: -0.95 Total: -7.30 kcal Total: -64.06 3.79 -60.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390452942.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.315 kcal (2) G-P(sol) polarization free energy of solvation -64.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds