Wall clock time and date at job start Mon Mar 30 2020 06:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47669 * 2 1 4 4 C 1.50695 * 109.47322 * 179.97438 * 3 2 1 5 5 N 1.29028 * 124.91477 * 89.97582 * 4 3 2 6 6 C 1.31788 * 117.12381 * 179.97438 * 5 4 3 7 7 C 1.33643 * 114.49850 * 359.97438 * 6 5 4 8 8 C 1.50697 * 126.03520 * 179.97438 * 7 6 5 9 9 N 1.46905 * 109.47066 * 90.00158 * 8 7 6 10 10 C 1.46901 * 110.99870 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.46916 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.46700 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46820 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00070 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00019 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00228 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 120.00068 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46685 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46910 * 120.00333 * 17 15 13 20 20 H 1.48502 * 109.47120 * 240.00671 * 17 15 13 21 21 S 1.70980 * 124.91628 * 270.28583 * 4 3 2 22 22 H 1.08998 * 109.47352 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47393 * 300.00471 * 1 2 3 24 24 H 1.09005 * 109.46513 * 60.00425 * 1 2 3 25 25 H 1.09003 * 109.47563 * 239.99447 * 2 1 3 26 26 H 1.09005 * 109.46865 * 119.99989 * 2 1 3 27 27 H 1.09003 * 109.47080 * 59.99151 * 3 2 1 28 28 H 1.09005 * 109.46969 * 299.99925 * 3 2 1 29 29 H 1.07998 * 122.74857 * 179.97438 * 6 5 4 30 30 H 1.09001 * 109.47558 * 330.00321 * 8 7 6 31 31 H 1.08998 * 109.47216 * 209.99983 * 8 7 6 32 32 H 1.00901 * 110.99869 * 56.04737 * 9 8 7 33 33 H 1.09004 * 109.47031 * 299.99620 * 10 9 8 34 34 H 1.08995 * 109.47111 * 59.99900 * 10 9 8 35 35 H 1.08995 * 109.46615 * 299.99641 * 11 10 9 36 36 H 1.08996 * 109.46939 * 60.00272 * 11 10 9 37 37 H 1.08993 * 109.47740 * 299.99810 * 12 11 10 38 38 H 1.09005 * 109.47573 * 59.99976 * 12 11 10 39 39 H 0.97002 * 120.00555 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5470 1.4423 0.0006 5 7 4.2860 1.4417 -1.0571 6 6 5.5916 1.4422 -0.8779 7 6 5.9753 1.4440 0.4023 8 6 7.3971 1.4444 0.9017 9 7 7.8594 2.8296 1.0620 10 6 9.2451 2.8692 1.5480 11 6 9.6898 4.3250 1.7028 12 6 11.1328 4.3661 2.2095 13 6 11.5711 5.8000 2.3614 14 1 10.8885 6.6017 2.1210 15 6 12.8432 6.0884 2.8084 16 7 13.6742 5.1123 3.1016 17 14 13.3862 7.8658 2.9973 18 1 12.2733 8.7676 2.6057 19 1 13.7563 8.1225 4.4124 20 1 14.5604 8.1201 2.1245 21 16 4.5251 1.4355 1.4030 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9564 0.8899 28 1 1.6768 1.9563 -0.8900 29 1 6.2939 1.4414 -1.6983 30 1 8.0348 0.9295 0.1831 31 1 7.4449 0.9319 1.8624 32 1 7.2462 3.3468 1.6741 33 1 9.3061 2.3664 2.5132 34 1 9.8952 2.3643 0.8336 35 1 9.6287 4.8280 0.7378 36 1 9.0396 4.8294 2.4175 37 1 11.1936 3.8632 3.1746 38 1 11.7834 3.8615 1.4952 39 1 14.5693 5.3151 3.4157 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390609694.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:58 Heat of formation + Delta-G solvation = 10.588602 kcal Electronic energy + Delta-G solvation = -16896.142334 eV Core-core repulsion = 14157.224771 eV Total energy + Delta-G solvation = -2738.917563 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.88244 -36.72950 -35.45734 -33.69516 -31.95605 -30.38014 -28.49559 -26.26574 -24.68401 -23.43773 -22.19310 -21.95896 -20.29632 -19.40165 -18.15685 -16.38235 -15.95836 -15.41913 -15.12814 -14.93700 -14.52541 -14.36673 -14.13945 -13.96975 -13.41909 -13.23439 -12.67972 -12.31447 -12.17770 -11.95991 -11.68677 -11.61247 -11.52389 -11.25093 -11.12206 -10.85893 -10.60345 -10.50033 -9.77623 -9.70305 -9.51762 -9.31433 -9.06757 -8.88641 -8.34747 -8.27700 -5.99530 -4.01508 0.54784 1.17117 1.60085 2.70962 3.31660 3.39008 3.43743 3.89859 4.39233 4.50307 4.55468 4.61308 4.71303 4.80640 5.04248 5.14408 5.20224 5.32194 5.36389 5.38438 5.50945 5.64811 5.66205 5.74421 5.74915 5.86674 5.87417 6.08014 6.27348 6.67728 6.70607 7.11297 7.22052 7.49151 7.60707 7.68566 7.82694 8.00771 8.44059 9.05855 9.62556 11.11913 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.053294 B = 0.002453 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.262466 B =11413.347843 C =11564.909241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.043 4.043 4 C 0.044 3.956 5 N -0.472 5.472 6 C 0.050 3.950 7 C -0.209 4.209 8 C 0.134 3.866 9 N -0.686 5.686 10 C 0.059 3.941 11 C -0.107 4.107 12 C 0.022 3.978 13 C -0.518 4.518 14 H 0.056 0.944 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 S 0.111 5.889 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.177 0.823 30 H 0.093 0.907 31 H 0.041 0.959 32 H 0.339 0.661 33 H 0.027 0.973 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.045 0.955 37 H 0.014 0.986 38 H 0.017 0.983 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.058 -11.758 -4.472 27.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.084 4.084 4 C -0.234 4.234 5 N -0.186 5.186 6 C -0.101 4.101 7 C -0.330 4.330 8 C 0.003 3.997 9 N -0.317 5.317 10 C -0.070 4.070 11 C -0.145 4.145 12 C -0.016 4.016 13 C -0.556 4.556 14 H 0.074 0.926 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.210 1.210 21 S 0.366 5.634 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.103 0.897 28 H 0.112 0.888 29 H 0.194 0.806 30 H 0.112 0.888 31 H 0.059 0.941 32 H 0.156 0.844 33 H 0.045 0.955 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.032 0.968 38 H 0.035 0.965 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -24.155 -11.729 -4.521 27.230 hybrid contribution 1.018 0.724 0.349 1.297 sum -23.137 -11.005 -4.172 25.958 Atomic orbital electron populations 1.21763 0.94972 1.02053 1.02110 1.21529 0.96208 0.95140 1.02855 1.20311 0.85090 0.98717 1.04269 1.26984 1.01289 1.04069 0.91017 1.66281 1.04969 1.15757 1.31574 1.21706 0.90779 1.01543 0.96037 1.25949 0.99420 1.11466 0.96214 1.20285 0.87860 0.91785 0.99816 1.60638 1.04536 1.10963 1.55548 1.22179 0.87229 0.99978 0.97570 1.21629 0.99676 0.92376 1.00815 1.19073 0.89334 0.97072 0.96124 1.21294 0.98086 0.92509 1.43761 0.92599 1.25040 0.96807 0.97186 0.95568 1.69975 1.06765 1.31226 1.45632 0.86534 0.78622 0.85194 0.77652 1.19719 1.21058 1.21000 1.83981 0.98161 1.68575 1.12701 0.92361 0.92482 0.92392 0.91259 0.91719 0.89718 0.88810 0.80630 0.88837 0.94120 0.84371 0.95522 0.91142 0.92444 0.93620 0.96772 0.96510 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.16 0.37 -0.39 16 2 C -0.12 -0.78 5.92 -26.73 -0.16 -0.93 16 3 C -0.04 -0.32 5.80 -27.89 -0.16 -0.49 16 4 C 0.04 0.47 6.64 -13.46 -0.09 0.38 16 5 N -0.47 -5.95 10.54 -11.86 -0.13 -6.07 16 6 C 0.05 0.62 11.25 -19.18 -0.22 0.40 16 7 C -0.21 -2.48 6.11 -35.92 -0.22 -2.69 16 8 C 0.13 1.63 6.22 -4.97 -0.03 1.60 16 9 N -0.69 -10.02 6.49 -115.05 -0.75 -10.76 16 10 C 0.06 1.00 5.69 -3.82 -0.02 0.97 16 11 C -0.11 -2.22 5.41 -26.73 -0.14 -2.37 16 12 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 13 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 15 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 17 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 S 0.11 1.14 23.18 -107.50 -2.49 -1.35 16 22 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 23 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.18 1.93 8.06 -52.49 -0.42 1.51 16 30 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.34 4.81 8.72 -39.29 -0.34 4.47 16 33 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 341.80 15.07 5.15 5.15 Total: -1.00 -31.15 341.80 -10.37 -41.52 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -6.65 Total: -2.15 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -1.22 Total: -16.79 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: -0.14 Total: -43.25 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.49 Total: -1.35 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.15 -10.37 -41.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390609694.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.112 kcal (2) G-P(sol) polarization free energy of solvation -31.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds