Wall clock time and date at job start Mon Mar 30 2020 06:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47669 * 2 1 4 4 C 1.50695 * 109.47322 * 179.97438 * 3 2 1 5 5 N 1.29028 * 124.91477 * 89.97582 * 4 3 2 6 6 C 1.31788 * 117.12381 * 179.97438 * 5 4 3 7 7 C 1.33643 * 114.49850 * 359.97438 * 6 5 4 8 8 C 1.50697 * 126.03520 * 179.97438 * 7 6 5 9 9 N 1.46905 * 109.47066 * 90.00158 * 8 7 6 10 10 C 1.46901 * 110.99870 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.46916 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.46700 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46820 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00070 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00019 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00228 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 120.00068 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46685 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46910 * 120.00333 * 17 15 13 20 20 H 1.48502 * 109.47120 * 240.00671 * 17 15 13 21 21 S 1.70980 * 124.91628 * 270.28583 * 4 3 2 22 22 H 1.08998 * 109.47352 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47393 * 300.00471 * 1 2 3 24 24 H 1.09005 * 109.46513 * 60.00425 * 1 2 3 25 25 H 1.09003 * 109.47563 * 239.99447 * 2 1 3 26 26 H 1.09005 * 109.46865 * 119.99989 * 2 1 3 27 27 H 1.09003 * 109.47080 * 59.99151 * 3 2 1 28 28 H 1.09005 * 109.46969 * 299.99925 * 3 2 1 29 29 H 1.07998 * 122.74857 * 179.97438 * 6 5 4 30 30 H 1.09001 * 109.47558 * 330.00321 * 8 7 6 31 31 H 1.08998 * 109.47216 * 209.99983 * 8 7 6 32 32 H 1.00901 * 110.99869 * 56.04737 * 9 8 7 33 33 H 1.09004 * 109.47031 * 299.99620 * 10 9 8 34 34 H 1.08995 * 109.47111 * 59.99900 * 10 9 8 35 35 H 1.08995 * 109.46615 * 299.99641 * 11 10 9 36 36 H 1.08996 * 109.46939 * 60.00272 * 11 10 9 37 37 H 1.08993 * 109.47740 * 299.99810 * 12 11 10 38 38 H 1.09005 * 109.47573 * 59.99976 * 12 11 10 39 39 H 0.97002 * 120.00555 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5470 1.4423 0.0006 5 7 4.2860 1.4417 -1.0571 6 6 5.5916 1.4422 -0.8779 7 6 5.9753 1.4440 0.4023 8 6 7.3971 1.4444 0.9017 9 7 7.8594 2.8296 1.0620 10 6 9.2451 2.8692 1.5480 11 6 9.6898 4.3250 1.7028 12 6 11.1328 4.3661 2.2095 13 6 11.5711 5.8000 2.3614 14 1 10.8885 6.6017 2.1210 15 6 12.8432 6.0884 2.8084 16 7 13.6742 5.1123 3.1016 17 14 13.3862 7.8658 2.9973 18 1 12.2733 8.7676 2.6057 19 1 13.7563 8.1225 4.4124 20 1 14.5604 8.1201 2.1245 21 16 4.5251 1.4355 1.4030 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9564 0.8899 28 1 1.6768 1.9563 -0.8900 29 1 6.2939 1.4414 -1.6983 30 1 8.0348 0.9295 0.1831 31 1 7.4449 0.9319 1.8624 32 1 7.2462 3.3468 1.6741 33 1 9.3061 2.3664 2.5132 34 1 9.8952 2.3643 0.8336 35 1 9.6287 4.8280 0.7378 36 1 9.0396 4.8294 2.4175 37 1 11.1936 3.8632 3.1746 38 1 11.7834 3.8615 1.4952 39 1 14.5693 5.3151 3.4157 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390609694.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:57 Heat of formation + Delta-G solvation = -8.410171 kcal Electronic energy + Delta-G solvation = -16896.966183 eV Core-core repulsion = 14157.224771 eV Total energy + Delta-G solvation = -2739.741412 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.75077 -37.97421 -36.18335 -35.49129 -33.58438 -31.57188 -29.47768 -27.81268 -25.78671 -24.55921 -23.66773 -22.52610 -21.99573 -20.32225 -18.99858 -18.49624 -17.13027 -16.58198 -16.16612 -16.03159 -15.93068 -15.23884 -15.17317 -15.04637 -14.68517 -14.34216 -13.88495 -13.55481 -13.35022 -13.25978 -12.85529 -12.73694 -12.56557 -12.46980 -12.26197 -12.18312 -12.12431 -11.62873 -11.54780 -11.41572 -11.14168 -10.61165 -10.56231 -10.29081 -9.77134 -9.44402 -8.20878 -6.31587 -0.30992 0.34304 0.74651 1.39592 1.39943 1.53510 1.81641 2.40539 3.12235 3.14429 3.28081 3.82186 3.96371 4.09497 4.10257 4.14035 4.24768 4.36273 4.57099 4.61298 4.67462 4.71199 4.78486 4.82708 4.94259 4.96232 5.08092 5.13957 5.23043 5.24040 5.29497 5.43396 5.51467 5.74460 5.85499 5.93537 6.26059 6.32567 6.75191 6.85464 7.37573 8.91083 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.053294 B = 0.002453 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.262466 B =11413.347843 C =11564.909241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.044 4.044 4 C 0.045 3.955 5 N -0.500 5.500 6 C 0.042 3.958 7 C -0.226 4.226 8 C 0.138 3.862 9 N -0.688 5.688 10 C 0.073 3.927 11 C -0.093 4.093 12 C 0.025 3.975 13 C -0.543 4.543 14 H 0.058 0.942 15 C -0.002 4.002 16 N -0.933 5.933 17 Si 0.965 3.035 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.278 1.278 21 S 0.139 5.861 22 H 0.062 0.938 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.095 0.905 29 H 0.181 0.819 30 H 0.099 0.901 31 H 0.050 0.950 32 H 0.342 0.658 33 H 0.029 0.971 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.049 0.951 37 H -0.007 1.007 38 H -0.007 1.007 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.552 -11.227 -4.165 28.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.085 4.085 4 C -0.233 4.233 5 N -0.215 5.215 6 C -0.109 4.109 7 C -0.347 4.347 8 C 0.007 3.993 9 N -0.320 5.320 10 C -0.056 4.056 11 C -0.131 4.131 12 C -0.013 4.013 13 C -0.581 4.581 14 H 0.076 0.924 15 C -0.200 4.200 16 N -0.573 5.573 17 Si 0.790 3.210 18 H -0.187 1.187 19 H -0.203 1.203 20 H -0.203 1.203 21 S 0.394 5.606 22 H 0.081 0.919 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.122 0.878 28 H 0.113 0.887 29 H 0.198 0.802 30 H 0.117 0.883 31 H 0.068 0.932 32 H 0.160 0.840 33 H 0.047 0.953 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.011 0.989 38 H 0.012 0.988 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -25.671 -11.205 -4.214 28.325 hybrid contribution 1.423 0.512 0.254 1.533 sum -24.248 -10.693 -3.960 26.795 Atomic orbital electron populations 1.21746 0.93616 1.02570 1.02676 1.21493 0.97312 0.94262 1.02270 1.20493 0.83160 0.99593 1.05279 1.27554 1.02561 1.02336 0.90838 1.66328 1.05241 1.17288 1.32640 1.21879 0.91061 1.01465 0.96520 1.25904 0.99765 1.12472 0.96541 1.20262 0.88288 0.90262 1.00474 1.60539 1.03283 1.12817 1.55333 1.21868 0.88762 0.97132 0.97861 1.21376 0.96451 0.95150 1.00141 1.18977 0.92251 0.95524 0.94556 1.21732 0.98632 0.93779 1.43927 0.92357 1.25994 0.96898 1.02056 0.95047 1.70097 1.07255 1.33680 1.46288 0.85392 0.78336 0.79388 0.77887 1.18706 1.20266 1.20335 1.83842 0.97006 1.67916 1.11824 0.91904 0.91557 0.92195 0.92586 0.91587 0.87812 0.88654 0.80230 0.88284 0.93207 0.84006 0.95257 0.91270 0.92996 0.93197 0.98855 0.98830 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 71.98 0.71 -0.50 16 2 C -0.11 -1.33 5.92 30.59 0.18 -1.15 16 3 C -0.04 -0.59 5.80 29.85 0.17 -0.42 16 4 C 0.04 0.89 6.64 88.52 0.59 1.47 16 5 N -0.50 -12.25 10.54 -191.44 -2.02 -14.27 16 6 C 0.04 1.00 11.25 83.66 0.94 1.95 16 7 C -0.23 -5.08 6.11 24.64 0.15 -4.93 16 8 C 0.14 3.18 6.22 85.55 0.53 3.71 16 9 N -0.69 -19.31 6.49 -517.92 -3.36 -22.67 16 10 C 0.07 2.42 5.69 86.30 0.49 2.91 16 11 C -0.09 -3.86 5.41 30.59 0.17 -3.70 16 12 C 0.02 1.31 4.97 29.85 0.15 1.45 16 13 C -0.54 -31.39 9.11 25.60 0.23 -31.16 16 14 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 15 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 16 N -0.93 -57.15 13.29 21.45 0.28 -56.86 16 17 Si 0.97 44.76 29.54 68.60 2.03 46.78 16 18 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 S 0.14 2.63 23.18 -56.49 -1.31 1.32 16 22 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 23 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 24 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 25 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.18 3.91 8.06 -2.91 -0.02 3.89 16 30 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.34 9.23 8.72 -89.69 -0.78 8.45 16 33 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 37 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 38 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 39 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -66.18 341.80 0.63 -65.55 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 0.23 Total: 10.19 kcal Atomic # 6 Polarization: -34.81 SS G_CDS: 4.78 Total: -30.03 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -5.09 Total: -93.80 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -1.31 Total: 1.32 kcal Total: -66.18 0.63 -65.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390609694.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.135 kcal (2) G-P(sol) polarization free energy of solvation -66.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds