Wall clock time and date at job start Mon Mar 30 2020 06:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50702 * 109.47195 * 2 1 4 4 N 1.29025 * 124.91847 * 90.00386 * 3 2 1 5 5 C 1.31781 * 117.12555 * 180.02562 * 4 3 2 6 6 C 1.50704 * 122.74822 * 180.02562 * 5 4 3 7 7 N 1.46896 * 109.47370 * 274.97344 * 6 5 4 8 8 C 1.46901 * 110.99994 * 287.98632 * 7 6 5 9 9 C 1.46899 * 111.00207 * 164.03316 * 7 6 5 10 10 H 1.08993 * 109.47406 * 171.11686 * 9 7 6 11 11 C 1.50693 * 109.47365 * 51.10664 * 9 7 6 12 12 H 1.08007 * 119.99860 * 0.02562 * 11 9 7 13 13 C 1.37877 * 120.00207 * 180.02562 * 11 9 7 14 14 N 1.31519 * 119.99867 * 180.02562 * 13 11 9 15 15 Si 1.86796 * 119.99950 * 0.02562 * 13 11 9 16 16 H 1.48498 * 109.47200 * 90.00348 * 15 13 11 17 17 H 1.48505 * 109.46874 * 210.00051 * 15 13 11 18 18 H 1.48498 * 109.47247 * 330.00030 * 15 13 11 19 19 C 1.53009 * 109.46870 * 291.11144 * 9 7 6 20 20 C 1.52999 * 109.46795 * 294.90199 * 19 9 7 21 21 C 1.33638 * 114.49992 * 359.97438 * 5 4 3 22 22 S 1.70978 * 124.91600 * 269.99621 * 3 2 1 23 23 H 1.08996 * 109.47163 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47366 * 300.00636 * 1 2 3 25 25 H 1.08999 * 109.47116 * 59.99949 * 1 2 3 26 26 H 1.09001 * 109.47673 * 239.99813 * 2 1 3 27 27 H 1.09006 * 109.47008 * 119.99714 * 2 1 3 28 28 H 1.08998 * 109.46908 * 34.97774 * 6 5 4 29 29 H 1.09004 * 109.46712 * 154.97338 * 6 5 4 30 30 H 1.09000 * 109.47235 * 59.99579 * 8 7 6 31 31 H 1.09005 * 109.47016 * 180.02562 * 8 7 6 32 32 H 1.08997 * 109.46908 * 299.99982 * 8 7 6 33 33 H 0.97004 * 119.99572 * 180.02562 * 14 13 11 34 34 H 1.08997 * 109.47134 * 54.90223 * 19 9 7 35 35 H 1.08997 * 109.46829 * 174.90424 * 19 9 7 36 36 H 1.08998 * 109.47165 * 55.21333 * 20 19 9 37 37 H 1.09005 * 109.46572 * 175.20587 * 20 19 9 38 38 H 1.08998 * 109.47681 * 295.20505 * 20 19 9 39 39 H 1.07998 * 126.03691 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2786 2.1171 1.0580 5 6 2.7133 3.3483 0.8793 6 6 3.0404 4.2716 2.0245 7 7 1.8154 4.9451 2.4758 8 6 1.3757 5.9490 1.4976 9 6 2.0045 5.5493 3.8013 10 1 1.1431 6.1717 4.0432 11 6 3.2505 6.3969 3.7939 12 1 3.8425 6.4789 2.8943 13 6 3.6348 7.0677 4.9356 14 7 4.7220 7.8077 4.9289 15 14 2.6114 6.9253 6.4917 16 1 3.0974 5.7788 7.3007 17 1 2.7354 8.1766 7.2819 18 1 1.1878 6.7075 6.1297 19 6 2.1458 4.4442 4.8501 20 6 0.8340 3.6627 4.9472 21 6 2.8413 3.7105 -0.4007 22 16 2.3586 2.3435 -1.4020 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.4620 3.6945 2.8475 29 1 3.7644 5.0168 1.6950 30 1 1.1757 5.4627 0.5428 31 1 0.4672 6.4327 1.8567 32 1 2.1580 6.6967 1.3677 33 1 4.9926 8.2794 5.7322 34 1 2.9505 3.7687 4.5600 35 1 2.3761 4.8892 5.8180 36 1 0.5597 3.2891 3.9606 37 1 0.9609 2.8235 5.6311 38 1 0.0469 4.3186 5.3191 39 1 3.1803 4.6715 -0.7582 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393252307.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:13 Heat of formation + Delta-G solvation = 45.229779 kcal Electronic energy + Delta-G solvation = -18904.300737 eV Core-core repulsion = 16166.885327 eV Total energy + Delta-G solvation = -2737.415409 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.74408 -37.29426 -34.17894 -32.68504 -31.77824 -29.67803 -27.22530 -27.05235 -25.19140 -23.77568 -22.18415 -21.44466 -19.58831 -19.18458 -17.49051 -16.59603 -15.38717 -15.35366 -14.73079 -14.46405 -14.28420 -13.90596 -13.35464 -13.15054 -12.84227 -12.62937 -12.43272 -12.15838 -11.89566 -11.79656 -11.71759 -11.40692 -11.21633 -11.03084 -10.89492 -10.83722 -10.31421 -10.11267 -9.66899 -9.52189 -9.35200 -9.23048 -9.16000 -8.58127 -8.46358 -7.20958 -6.13312 -4.14403 0.94330 1.56746 1.93546 3.10121 3.26753 3.37414 3.39859 4.20220 4.37307 4.90017 5.03985 5.12221 5.15206 5.20770 5.48410 5.56819 5.67408 5.75005 5.85954 5.97016 6.06331 6.09037 6.12303 6.25341 6.30794 6.36828 6.45815 6.61355 6.64440 6.73302 6.87139 6.98491 7.15042 7.25678 7.52970 8.03382 8.07728 8.15238 8.42919 8.87267 9.50366 10.99259 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.028179 B = 0.005387 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.407215 B = 5196.471381 C = 5770.850992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.044 4.044 3 C 0.048 3.952 4 N -0.449 5.449 5 C 0.097 3.903 6 C 0.132 3.868 7 N -0.522 5.522 8 C 0.031 3.969 9 C 0.182 3.818 10 H 0.040 0.960 11 C -0.547 4.547 12 H 0.076 0.924 13 C 0.075 3.925 14 N -0.897 5.897 15 Si 0.887 3.113 16 H -0.277 1.277 17 H -0.299 1.299 18 H -0.264 1.264 19 C -0.119 4.119 20 C -0.143 4.143 21 C -0.256 4.256 22 S 0.076 5.924 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.033 0.967 33 H 0.264 0.736 34 H 0.059 0.941 35 H 0.046 0.954 36 H 0.066 0.934 37 H 0.033 0.967 38 H 0.037 0.963 39 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.697 -12.745 -10.944 18.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 C -0.231 4.231 4 N -0.164 5.164 5 C -0.034 4.034 6 C 0.002 3.998 7 N -0.245 5.245 8 C -0.117 4.117 9 C 0.075 3.925 10 H 0.058 0.942 11 C -0.586 4.586 12 H 0.094 0.906 13 C -0.127 4.127 14 N -0.535 5.535 15 Si 0.718 3.282 16 H -0.204 1.204 17 H -0.226 1.226 18 H -0.189 1.189 19 C -0.157 4.157 20 C -0.201 4.201 21 C -0.395 4.395 22 S 0.330 5.670 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.111 0.889 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -7.098 -13.387 -11.352 18.934 hybrid contribution 0.518 1.380 1.514 2.113 sum -6.580 -12.008 -9.838 16.860 Atomic orbital electron populations 1.21754 0.93685 1.02160 1.02841 1.20165 0.96624 0.87890 1.03832 1.27042 1.03689 1.01591 0.90741 1.66098 1.13291 1.06078 1.30890 1.20614 0.97544 0.90843 0.94430 1.20524 0.92437 0.93742 0.93118 1.62238 1.29899 1.28947 1.03387 1.22228 0.99975 0.94453 0.95088 1.19753 0.96808 0.91251 0.84725 0.94243 1.21629 1.09176 1.28455 0.99329 0.90556 1.24969 0.94609 0.94382 0.98784 1.69916 1.23743 1.30761 1.29063 0.86850 0.81734 0.76165 0.83496 1.20444 1.22642 1.18865 1.21894 0.96684 0.98342 0.98733 1.21724 0.98120 0.98752 1.01456 1.26823 1.13343 1.03653 0.95702 1.83695 1.62199 1.07146 1.13981 0.91721 0.91689 0.92562 0.90097 0.88942 0.89147 0.92327 0.93508 0.92524 0.94847 0.92642 0.92239 0.93632 0.91534 0.94816 0.94355 0.80990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.89 37.15 0.37 -0.97 16 2 C -0.04 -0.44 6.52 -27.89 -0.18 -0.63 16 3 C 0.05 0.66 6.64 -13.46 -0.09 0.58 16 4 N -0.45 -7.68 10.53 -8.05 -0.08 -7.77 16 5 C 0.10 1.70 5.76 -84.22 -0.48 1.22 16 6 C 0.13 2.64 4.45 -4.98 -0.02 2.62 16 7 N -0.52 -10.80 4.01 -237.73 -0.95 -11.76 16 8 C 0.03 0.60 9.11 60.07 0.55 1.14 16 9 C 0.18 4.26 1.28 -68.86 -0.09 4.17 16 10 H 0.04 0.97 7.02 -51.93 -0.36 0.61 16 11 C -0.55 -14.76 7.86 -34.44 -0.27 -15.03 16 12 H 0.08 2.22 6.24 -52.48 -0.33 1.89 16 13 C 0.08 2.13 5.45 -17.82 -0.10 2.03 16 14 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 15 Si 0.89 21.90 24.41 -169.99 -4.15 17.75 16 16 H -0.28 -6.73 6.83 56.52 0.39 -6.34 16 17 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 18 H -0.26 -6.28 6.53 56.52 0.37 -5.91 16 19 C -0.12 -2.64 4.88 -26.73 -0.13 -2.77 16 20 C -0.14 -2.76 9.86 37.16 0.37 -2.40 16 21 C -0.26 -3.85 10.03 29.12 0.29 -3.56 16 22 S 0.08 0.94 23.18 -107.50 -2.49 -1.55 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.09 1.93 6.04 -51.93 -0.31 1.62 16 29 H 0.06 1.23 6.57 -51.93 -0.34 0.89 16 30 H 0.05 0.79 6.69 -51.93 -0.35 0.45 16 31 H 0.06 1.04 8.03 -51.93 -0.42 0.62 16 32 H 0.03 0.67 7.41 -51.93 -0.38 0.29 16 33 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.06 1.32 6.24 -51.93 -0.32 1.00 16 35 H 0.05 1.07 3.21 -51.93 -0.17 0.90 16 36 H 0.07 1.30 7.63 -51.93 -0.40 0.90 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.17 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 316.73 15.07 4.77 4.77 Total: -1.00 -29.90 316.73 -7.87 -37.77 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -5.95 Total: 0.54 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: 0.21 Total: -13.58 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: -0.27 Total: -45.70 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.15 Total: 17.75 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.49 Total: -1.55 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.90 -7.87 -37.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393252307.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.001 kcal (2) G-P(sol) polarization free energy of solvation -29.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds