Wall clock time and date at job start Mon Mar 30 2020 06:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50702 * 109.47195 * 2 1 4 4 N 1.29025 * 124.91847 * 90.00386 * 3 2 1 5 5 C 1.31781 * 117.12555 * 180.02562 * 4 3 2 6 6 C 1.50704 * 122.74822 * 180.02562 * 5 4 3 7 7 N 1.46896 * 109.47370 * 274.97344 * 6 5 4 8 8 C 1.46901 * 110.99994 * 287.98632 * 7 6 5 9 9 C 1.46899 * 111.00207 * 164.03316 * 7 6 5 10 10 H 1.08993 * 109.47406 * 171.11686 * 9 7 6 11 11 C 1.50693 * 109.47365 * 51.10664 * 9 7 6 12 12 H 1.08007 * 119.99860 * 0.02562 * 11 9 7 13 13 C 1.37877 * 120.00207 * 180.02562 * 11 9 7 14 14 N 1.31519 * 119.99867 * 180.02562 * 13 11 9 15 15 Si 1.86796 * 119.99950 * 0.02562 * 13 11 9 16 16 H 1.48498 * 109.47200 * 90.00348 * 15 13 11 17 17 H 1.48505 * 109.46874 * 210.00051 * 15 13 11 18 18 H 1.48498 * 109.47247 * 330.00030 * 15 13 11 19 19 C 1.53009 * 109.46870 * 291.11144 * 9 7 6 20 20 C 1.52999 * 109.46795 * 294.90199 * 19 9 7 21 21 C 1.33638 * 114.49992 * 359.97438 * 5 4 3 22 22 S 1.70978 * 124.91600 * 269.99621 * 3 2 1 23 23 H 1.08996 * 109.47163 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47366 * 300.00636 * 1 2 3 25 25 H 1.08999 * 109.47116 * 59.99949 * 1 2 3 26 26 H 1.09001 * 109.47673 * 239.99813 * 2 1 3 27 27 H 1.09006 * 109.47008 * 119.99714 * 2 1 3 28 28 H 1.08998 * 109.46908 * 34.97774 * 6 5 4 29 29 H 1.09004 * 109.46712 * 154.97338 * 6 5 4 30 30 H 1.09000 * 109.47235 * 59.99579 * 8 7 6 31 31 H 1.09005 * 109.47016 * 180.02562 * 8 7 6 32 32 H 1.08997 * 109.46908 * 299.99982 * 8 7 6 33 33 H 0.97004 * 119.99572 * 180.02562 * 14 13 11 34 34 H 1.08997 * 109.47134 * 54.90223 * 19 9 7 35 35 H 1.08997 * 109.46829 * 174.90424 * 19 9 7 36 36 H 1.08998 * 109.47165 * 55.21333 * 20 19 9 37 37 H 1.09005 * 109.46572 * 175.20587 * 20 19 9 38 38 H 1.08998 * 109.47681 * 295.20505 * 20 19 9 39 39 H 1.07998 * 126.03691 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2786 2.1171 1.0580 5 6 2.7133 3.3483 0.8793 6 6 3.0404 4.2716 2.0245 7 7 1.8154 4.9451 2.4758 8 6 1.3757 5.9490 1.4976 9 6 2.0045 5.5493 3.8013 10 1 1.1431 6.1717 4.0432 11 6 3.2505 6.3969 3.7939 12 1 3.8425 6.4789 2.8943 13 6 3.6348 7.0677 4.9356 14 7 4.7220 7.8077 4.9289 15 14 2.6114 6.9253 6.4917 16 1 3.0974 5.7788 7.3007 17 1 2.7354 8.1766 7.2819 18 1 1.1878 6.7075 6.1297 19 6 2.1458 4.4442 4.8501 20 6 0.8340 3.6627 4.9472 21 6 2.8413 3.7105 -0.4007 22 16 2.3586 2.3435 -1.4020 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.4620 3.6945 2.8475 29 1 3.7644 5.0168 1.6950 30 1 1.1757 5.4627 0.5428 31 1 0.4672 6.4327 1.8567 32 1 2.1580 6.6967 1.3677 33 1 4.9926 8.2794 5.7322 34 1 2.9505 3.7687 4.5600 35 1 2.3761 4.8892 5.8180 36 1 0.5597 3.2891 3.9606 37 1 0.9609 2.8235 5.6311 38 1 0.0469 4.3186 5.3191 39 1 3.1803 4.6715 -0.7582 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393252307.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:13 Heat of formation + Delta-G solvation = 25.407895 kcal Electronic energy + Delta-G solvation = -18905.160278 eV Core-core repulsion = 16166.885327 eV Total energy + Delta-G solvation = -2738.274951 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.99391 -38.97449 -35.29940 -34.43248 -33.60929 -30.91624 -29.10862 -28.50039 -26.21240 -25.51625 -23.80011 -22.63884 -21.11620 -20.64767 -19.03633 -18.24346 -17.23113 -16.58752 -16.15308 -15.96389 -15.42486 -15.33062 -14.81538 -14.66602 -14.42212 -14.10999 -13.80435 -13.61286 -13.56426 -13.09149 -13.03293 -12.78994 -12.57497 -12.49892 -12.43982 -12.09175 -11.93790 -11.85503 -11.45973 -11.40877 -11.18085 -10.69415 -10.47157 -10.27818 -9.62431 -8.96972 -8.32500 -6.36722 -0.17870 0.49930 0.80203 1.29980 1.34747 1.45104 1.85554 2.30070 3.02763 3.15019 3.42141 3.95337 4.25944 4.27950 4.29438 4.36340 4.39494 4.44027 4.52716 4.63459 4.73291 4.73942 4.84542 4.86236 5.02069 5.03494 5.06570 5.10073 5.15220 5.23050 5.25880 5.39410 5.44692 5.48982 5.58132 6.12408 6.30951 6.43569 6.70061 6.94950 7.31722 8.83454 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.028179 B = 0.005387 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.407215 B = 5196.471381 C = 5770.850992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.046 4.046 3 C 0.043 3.957 4 N -0.488 5.488 5 C 0.076 3.924 6 C 0.144 3.856 7 N -0.517 5.517 8 C 0.036 3.964 9 C 0.186 3.814 10 H 0.035 0.965 11 C -0.540 4.540 12 H 0.042 0.958 13 C 0.020 3.980 14 N -0.945 5.945 15 Si 0.944 3.056 16 H -0.269 1.269 17 H -0.300 1.300 18 H -0.246 1.246 19 C -0.118 4.118 20 C -0.132 4.132 21 C -0.269 4.269 22 S 0.153 5.847 23 H 0.089 0.911 24 H 0.041 0.959 25 H 0.060 0.940 26 H 0.111 0.889 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.035 0.965 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.012 0.988 33 H 0.265 0.735 34 H 0.051 0.949 35 H 0.036 0.964 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.045 0.955 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.739 -14.933 -11.978 21.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.087 4.087 3 C -0.236 4.236 4 N -0.203 5.203 5 C -0.056 4.056 6 C 0.013 3.987 7 N -0.239 5.239 8 C -0.113 4.113 9 C 0.078 3.922 10 H 0.052 0.948 11 C -0.579 4.579 12 H 0.060 0.940 13 C -0.178 4.178 14 N -0.585 5.585 15 Si 0.771 3.229 16 H -0.195 1.195 17 H -0.228 1.228 18 H -0.170 1.170 19 C -0.156 4.156 20 C -0.189 4.189 21 C -0.409 4.409 22 S 0.408 5.592 23 H 0.108 0.892 24 H 0.061 0.939 25 H 0.079 0.921 26 H 0.129 0.871 27 H 0.110 0.890 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -9.158 -15.601 -12.417 21.942 hybrid contribution 1.197 1.997 1.640 2.848 sum -7.961 -13.604 -10.778 19.094 Atomic orbital electron populations 1.21736 0.92833 1.03551 1.01912 1.20397 0.97214 0.85801 1.05274 1.27718 1.02147 1.02857 0.90849 1.66049 1.15167 1.06157 1.32903 1.20160 0.99983 0.91266 0.94168 1.20237 0.91534 0.93384 0.93551 1.62281 1.30082 1.28823 1.02751 1.22234 0.99392 0.93836 0.95793 1.19633 0.94404 0.91261 0.86918 0.94765 1.21872 1.09854 1.28300 0.97882 0.94030 1.25759 0.95681 0.94230 1.02125 1.70054 1.25866 1.32510 1.30062 0.85919 0.81086 0.76197 0.79677 1.19492 1.22796 1.16984 1.21818 0.98363 0.97985 0.97445 1.21608 0.96258 0.99118 1.01958 1.27007 1.12620 1.05344 0.95928 1.83393 1.60176 1.04185 1.11408 0.89225 0.93948 0.92101 0.87117 0.89042 0.91324 0.94694 0.91266 0.91755 0.96911 0.92633 0.93043 0.94577 0.91850 0.92637 0.93555 0.80315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.89 71.98 0.71 -1.46 16 2 C -0.05 -0.79 6.52 29.85 0.19 -0.59 16 3 C 0.04 1.08 6.64 88.52 0.59 1.66 16 4 N -0.49 -16.30 10.53 -179.40 -1.89 -18.19 16 5 C 0.08 2.66 5.76 41.52 0.24 2.90 16 6 C 0.14 5.95 4.45 85.56 0.38 6.33 16 7 N -0.52 -21.62 4.01 -906.05 -3.64 -25.26 16 8 C 0.04 1.37 9.11 127.69 1.16 2.54 16 9 C 0.19 8.76 1.28 44.17 0.06 8.82 16 10 H 0.03 1.66 7.02 -2.39 -0.02 1.65 16 11 C -0.54 -30.18 7.86 25.60 0.20 -29.98 16 12 H 0.04 2.56 6.24 -2.91 -0.02 2.55 16 13 C 0.02 1.17 5.45 84.65 0.46 1.64 16 14 N -0.94 -58.79 13.96 21.45 0.30 -58.49 16 15 Si 0.94 45.31 24.41 68.60 1.67 46.98 16 16 H -0.27 -12.44 6.83 99.48 0.68 -11.76 16 17 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 18 H -0.25 -11.01 6.53 99.48 0.65 -10.36 16 19 C -0.12 -5.19 4.88 30.60 0.15 -5.04 16 20 C -0.13 -4.82 9.86 71.98 0.71 -4.12 16 21 C -0.27 -7.83 10.03 66.78 0.67 -7.16 16 22 S 0.15 3.36 23.18 -56.49 -1.31 2.05 16 23 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.07 3.09 6.04 -2.39 -0.01 3.07 16 29 H 0.03 1.58 6.57 -2.39 -0.02 1.56 16 30 H 0.07 2.30 6.69 -2.39 -0.02 2.29 16 31 H 0.06 2.32 8.03 -2.38 -0.02 2.30 16 32 H 0.01 0.52 7.41 -2.39 -0.02 0.50 16 33 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 34 H 0.05 2.31 6.24 -2.39 -0.01 2.30 16 35 H 0.04 1.65 3.21 -2.39 -0.01 1.64 16 36 H 0.06 2.36 7.63 -2.39 -0.02 2.34 16 37 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 38 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.18 4.79 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -66.29 316.73 1.61 -64.68 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.95 Total: 12.69 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: 5.53 Total: -24.46 kcal Atomic # 7 Polarization: -96.71 SS G_CDS: -5.23 Total: -101.94 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.67 Total: 46.98 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -1.31 Total: 2.05 kcal Total: -66.29 1.61 -64.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393252307.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.084 kcal (2) G-P(sol) polarization free energy of solvation -66.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds