Wall clock time and date at job start Mon Mar 30 2020 07:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47476 * 2 1 4 4 O 1.42897 * 109.47309 * 120.00580 * 2 1 3 5 5 C 1.42904 * 113.99981 * 89.99163 * 4 2 1 6 6 C 1.53002 * 109.46950 * 179.97438 * 5 4 2 7 7 C 1.50700 * 109.47116 * 180.02562 * 6 5 4 8 8 N 1.29954 * 126.28654 * 90.03068 * 7 6 5 9 9 O 1.21293 * 110.25286 * 180.02562 * 8 7 6 10 10 C 1.33642 * 109.81058 * 359.97438 * 9 8 7 11 11 C 1.50698 * 126.55339 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47431 * 269.97717 * 11 10 9 13 13 H 1.09005 * 109.46510 * 305.00000 * 12 11 10 14 14 C 1.53000 * 109.47280 * 64.99429 * 12 11 10 15 15 C 1.50692 * 109.47480 * 184.99797 * 12 11 10 16 16 H 1.08008 * 120.00221 * 359.97438 * 15 12 11 17 17 C 1.37880 * 120.00332 * 179.97438 * 15 12 11 18 18 N 1.31514 * 119.99480 * 359.97438 * 17 15 12 19 19 Si 1.86795 * 120.00373 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.47145 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47570 * 119.99680 * 19 17 15 22 22 H 1.48501 * 109.47180 * 240.00241 * 19 17 15 23 23 N 1.31130 * 106.90015 * 0.02562 * 10 9 8 24 24 H 1.09006 * 109.46642 * 299.99678 * 1 2 3 25 25 H 1.08996 * 109.47564 * 59.99161 * 1 2 3 26 26 H 1.08994 * 109.47334 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46642 * 240.00322 * 2 1 3 28 28 H 1.08997 * 109.46849 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47177 * 300.00285 * 3 2 1 30 30 H 1.08999 * 109.46974 * 60.00860 * 3 2 1 31 31 H 1.09007 * 109.46902 * 60.00790 * 5 4 2 32 32 H 1.08994 * 109.47601 * 300.00137 * 5 4 2 33 33 H 1.09003 * 109.47274 * 60.00602 * 6 5 4 34 34 H 1.08999 * 109.47622 * 300.00681 * 6 5 4 35 35 H 1.09000 * 109.46935 * 29.97313 * 11 10 9 36 36 H 1.08997 * 109.47416 * 149.97136 * 11 10 9 37 37 H 1.08994 * 109.46815 * 60.00339 * 14 12 11 38 38 H 1.08999 * 109.47166 * 180.02562 * 14 12 11 39 39 H 1.08999 * 109.47100 * 300.00345 * 14 12 11 40 40 H 0.97002 * 119.99674 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.1999 -2.0783 0.9884 6 6 2.7090 -2.6927 2.2939 7 6 2.9138 -4.1738 2.1058 8 7 4.0059 -4.7548 1.7076 9 8 3.8483 -5.9564 1.6582 10 6 2.6030 -6.2656 2.0321 11 6 2.0060 -7.6472 2.1093 12 6 1.3642 -8.0013 0.7663 13 1 0.6429 -7.2307 0.4940 14 6 2.4483 -8.0883 -0.3098 15 6 0.6615 -9.3295 0.8800 16 1 0.6719 -9.8676 1.8165 17 6 0.0052 -9.8579 -0.2113 18 7 -0.0080 -9.2025 -1.3514 19 14 -0.8665 -11.5040 -0.0702 20 1 -0.7046 -12.0333 1.3078 21 1 -2.3108 -11.3264 -0.3662 22 1 -0.2765 -12.4613 -1.0400 23 7 1.9998 -5.1372 2.3189 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 3.1300 1.4423 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6769 1.9562 0.8901 31 1 2.9319 -2.2468 0.1984 32 1 1.2537 -2.5434 0.7123 33 1 1.9775 -2.5242 3.0843 34 1 3.6554 -2.2275 2.5697 35 1 2.7896 -8.3692 2.3391 36 1 1.2480 -7.6722 2.8922 37 1 3.1695 -8.8588 -0.0375 38 1 1.9910 -8.3402 -1.2667 39 1 2.9565 -7.1276 -0.3921 40 1 -0.4694 -9.5744 -2.1193 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395447786.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:03 Heat of formation + Delta-G solvation = -7.080792 kcal Electronic energy + Delta-G solvation = -20207.582617 eV Core-core repulsion = 17025.145980 eV Total energy + Delta-G solvation = -3182.436637 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.14631 -38.63352 -35.94001 -35.52082 -33.55071 -32.59636 -31.10294 -29.93503 -27.44384 -26.64892 -25.26246 -24.38866 -22.90488 -21.55865 -21.02406 -19.64680 -17.78726 -17.05944 -16.85072 -16.33220 -15.73008 -15.17726 -14.68698 -14.39742 -13.88748 -13.83910 -13.37506 -13.09187 -12.85638 -12.64474 -12.45664 -12.14587 -11.95142 -11.87850 -11.70440 -11.40037 -11.25586 -11.07053 -10.95706 -10.85817 -10.70422 -10.55785 -10.24887 -10.00697 -9.93321 -9.71173 -9.16563 -8.98357 -8.44074 -6.08658 -4.16929 1.58190 2.54974 3.25767 3.30013 3.34329 3.37076 3.42824 4.13968 4.36061 4.40679 4.66254 4.81136 4.96137 5.01063 5.07211 5.23254 5.26910 5.37037 5.38759 5.55035 5.60291 5.63559 5.75554 5.83229 5.93483 6.00360 6.04077 6.14462 6.18528 6.40825 6.51799 6.79772 7.00445 7.05520 7.17476 7.60291 7.80879 8.00473 8.26108 8.58345 8.85838 9.48883 10.97652 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.022383 B = 0.003696 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.664547 B = 7574.900738 C = 8380.042610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.081 3.919 3 C -0.149 4.149 4 O -0.382 6.382 5 C 0.070 3.930 6 C -0.020 4.020 7 C 0.163 3.837 8 N -0.396 5.396 9 O 0.071 5.929 10 C 0.219 3.781 11 C -0.028 4.028 12 C 0.050 3.950 13 H 0.034 0.966 14 C -0.141 4.141 15 C -0.517 4.517 16 H 0.061 0.939 17 C 0.063 3.937 18 N -0.887 5.887 19 Si 0.896 3.104 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 N -0.495 5.495 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.032 0.968 38 H 0.086 0.914 39 H 0.003 0.997 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.851 14.744 3.472 15.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.023 3.977 3 C -0.206 4.206 4 O -0.302 6.302 5 C -0.008 4.008 6 C -0.059 4.059 7 C -0.110 4.110 8 N -0.106 5.106 9 O 0.014 5.986 10 C 0.001 3.999 11 C -0.067 4.067 12 C 0.031 3.969 13 H 0.053 0.947 14 C -0.199 4.199 15 C -0.555 4.555 16 H 0.080 0.920 17 C -0.139 4.139 18 N -0.525 5.525 19 Si 0.724 3.276 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.210 1.210 23 N -0.228 5.228 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.051 0.949 38 H 0.105 0.895 39 H 0.022 0.978 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.212 15.525 3.406 16.443 hybrid contribution -0.588 -1.189 -0.358 1.374 sum 3.624 14.336 3.048 15.098 Atomic orbital electron populations 1.22310 0.95821 1.02784 1.02507 1.22089 0.93829 0.93656 0.88113 1.21858 1.01753 0.94486 1.02479 1.87846 1.86712 1.19692 1.35934 1.22377 1.00312 0.81510 0.96607 1.19597 1.03982 0.83562 0.98753 1.25427 0.86252 0.98976 1.00371 1.74553 1.24019 0.90487 1.21582 1.85290 1.32661 1.17902 1.62714 1.29569 0.80789 0.99546 0.90044 1.20865 0.99622 0.81985 1.04205 1.18743 0.93631 0.97627 0.86936 0.94740 1.21890 0.97681 0.96488 1.03841 1.21062 1.33034 1.03944 0.97448 0.92029 1.24955 0.96070 0.97593 0.95271 1.69903 1.42805 1.38296 1.01522 0.86473 0.79330 0.83611 0.78213 1.19629 1.20996 1.20996 1.71937 1.29797 0.97687 1.23417 0.91724 0.91658 0.92140 0.92141 0.92027 0.91264 0.91770 0.92934 0.92299 0.88019 0.88661 0.89151 0.88157 0.94854 0.89527 0.97758 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.68 9.53 37.16 0.35 -1.33 16 2 C 0.08 0.83 3.34 -26.73 -0.09 0.74 16 3 C -0.15 -1.22 9.56 37.16 0.36 -0.86 16 4 O -0.38 -4.77 9.99 -35.23 -0.35 -5.13 16 5 C 0.07 0.92 5.73 37.16 0.21 1.13 16 6 C -0.02 -0.27 6.21 -27.88 -0.17 -0.44 16 7 C 0.16 2.81 7.47 -156.37 -1.17 1.64 16 8 N -0.40 -7.26 12.16 30.90 0.38 -6.88 16 9 O 0.07 1.35 10.75 18.11 0.19 1.54 16 10 C 0.22 4.19 6.92 -13.06 -0.09 4.10 16 11 C -0.03 -0.53 5.26 -27.88 -0.15 -0.68 16 12 C 0.05 1.19 2.29 -91.77 -0.21 0.98 16 13 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 14 C -0.14 -3.30 8.78 37.16 0.33 -2.97 16 15 C -0.52 -13.27 8.56 -34.44 -0.29 -13.56 16 16 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 17 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 18 N -0.89 -24.59 11.32 55.43 0.63 -23.96 16 19 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 N -0.49 -9.47 11.55 -9.87 -0.11 -9.59 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.64 7.87 -51.93 -0.41 0.23 16 27 H 0.06 0.60 7.79 -51.93 -0.40 0.20 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.70 8.09 -51.93 -0.42 0.28 16 32 H 0.06 0.83 7.87 -51.93 -0.41 0.42 16 33 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 36 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 39 H 0.00 0.08 6.93 -51.93 -0.36 -0.28 16 40 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 335.82 15.07 5.06 5.06 Total: -1.00 -28.45 335.82 -6.76 -35.20 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -6.51 Total: -1.95 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -1.02 Total: -9.68 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.89 Total: -40.43 kcal Atomic # 8 Polarization: -3.43 SS G_CDS: -0.16 Total: -3.58 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.45 -6.76 -35.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395447786.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.123 kcal (2) G-P(sol) polarization free energy of solvation -28.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds