Wall clock time and date at job start Mon Mar 30 2020 07:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47476 * 2 1 4 4 O 1.42897 * 109.47309 * 120.00580 * 2 1 3 5 5 C 1.42904 * 113.99981 * 89.99163 * 4 2 1 6 6 C 1.53002 * 109.46950 * 179.97438 * 5 4 2 7 7 C 1.50700 * 109.47116 * 180.02562 * 6 5 4 8 8 N 1.29954 * 126.28654 * 90.03068 * 7 6 5 9 9 O 1.21293 * 110.25286 * 180.02562 * 8 7 6 10 10 C 1.33642 * 109.81058 * 359.97438 * 9 8 7 11 11 C 1.50698 * 126.55339 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47431 * 269.97717 * 11 10 9 13 13 H 1.09005 * 109.46510 * 305.00000 * 12 11 10 14 14 C 1.53000 * 109.47280 * 64.99429 * 12 11 10 15 15 C 1.50692 * 109.47480 * 184.99797 * 12 11 10 16 16 H 1.08008 * 120.00221 * 359.97438 * 15 12 11 17 17 C 1.37880 * 120.00332 * 179.97438 * 15 12 11 18 18 N 1.31514 * 119.99480 * 359.97438 * 17 15 12 19 19 Si 1.86795 * 120.00373 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.47145 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47570 * 119.99680 * 19 17 15 22 22 H 1.48501 * 109.47180 * 240.00241 * 19 17 15 23 23 N 1.31130 * 106.90015 * 0.02562 * 10 9 8 24 24 H 1.09006 * 109.46642 * 299.99678 * 1 2 3 25 25 H 1.08996 * 109.47564 * 59.99161 * 1 2 3 26 26 H 1.08994 * 109.47334 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46642 * 240.00322 * 2 1 3 28 28 H 1.08997 * 109.46849 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47177 * 300.00285 * 3 2 1 30 30 H 1.08999 * 109.46974 * 60.00860 * 3 2 1 31 31 H 1.09007 * 109.46902 * 60.00790 * 5 4 2 32 32 H 1.08994 * 109.47601 * 300.00137 * 5 4 2 33 33 H 1.09003 * 109.47274 * 60.00602 * 6 5 4 34 34 H 1.08999 * 109.47622 * 300.00681 * 6 5 4 35 35 H 1.09000 * 109.46935 * 29.97313 * 11 10 9 36 36 H 1.08997 * 109.47416 * 149.97136 * 11 10 9 37 37 H 1.08994 * 109.46815 * 60.00339 * 14 12 11 38 38 H 1.08999 * 109.47166 * 180.02562 * 14 12 11 39 39 H 1.08999 * 109.47100 * 300.00345 * 14 12 11 40 40 H 0.97002 * 119.99674 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.1999 -2.0783 0.9884 6 6 2.7090 -2.6927 2.2939 7 6 2.9138 -4.1738 2.1058 8 7 4.0059 -4.7548 1.7076 9 8 3.8483 -5.9564 1.6582 10 6 2.6030 -6.2656 2.0321 11 6 2.0060 -7.6472 2.1093 12 6 1.3642 -8.0013 0.7663 13 1 0.6429 -7.2307 0.4940 14 6 2.4483 -8.0883 -0.3098 15 6 0.6615 -9.3295 0.8800 16 1 0.6719 -9.8676 1.8165 17 6 0.0052 -9.8579 -0.2113 18 7 -0.0080 -9.2025 -1.3514 19 14 -0.8665 -11.5040 -0.0702 20 1 -0.7046 -12.0333 1.3078 21 1 -2.3108 -11.3264 -0.3662 22 1 -0.2765 -12.4613 -1.0400 23 7 1.9998 -5.1372 2.3189 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 3.1300 1.4423 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6769 1.9562 0.8901 31 1 2.9319 -2.2468 0.1984 32 1 1.2537 -2.5434 0.7123 33 1 1.9775 -2.5242 3.0843 34 1 3.6554 -2.2275 2.5697 35 1 2.7896 -8.3692 2.3391 36 1 1.2480 -7.6722 2.8922 37 1 3.1695 -8.8588 -0.0375 38 1 1.9910 -8.3402 -1.2667 39 1 2.9565 -7.1276 -0.3921 40 1 -0.4694 -9.5744 -2.1193 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395447786.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:02 Heat of formation + Delta-G solvation = -24.132461 kcal Electronic energy + Delta-G solvation = -20208.322033 eV Core-core repulsion = 17025.145980 eV Total energy + Delta-G solvation = -3183.176053 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -46.59293 -39.56928 -37.50446 -37.07560 -34.84782 -33.95639 -32.67578 -31.21280 -28.33360 -28.14917 -27.24400 -25.62542 -24.33793 -22.63832 -22.25751 -21.32332 -19.24509 -18.47717 -18.20330 -17.87857 -16.77530 -16.56318 -16.11356 -15.77820 -15.29209 -14.97945 -14.77963 -14.64247 -14.06585 -13.62323 -13.53050 -13.40270 -13.18374 -13.06385 -12.99632 -12.85216 -12.80315 -12.52244 -12.36960 -12.23500 -12.14021 -12.03625 -11.73182 -11.69374 -11.65015 -10.92777 -10.75349 -10.65172 -10.45356 -8.09056 -6.23546 0.11448 1.13766 1.46563 1.49305 1.59963 1.86824 2.29583 2.47246 2.90017 3.11299 3.21290 3.81364 3.84287 4.02801 4.06055 4.13438 4.23889 4.25988 4.40645 4.48608 4.51760 4.72140 4.74085 4.76747 4.84497 4.87268 4.89015 4.93286 4.95407 5.04933 5.10491 5.24820 5.30831 5.31672 5.61363 5.85121 6.05103 6.13474 6.28614 6.87657 7.12786 7.45988 8.97003 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.022383 B = 0.003696 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.664547 B = 7574.900738 C = 8380.042610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.070 3.930 3 C -0.144 4.144 4 O -0.389 6.389 5 C 0.077 3.923 6 C -0.018 4.018 7 C 0.168 3.832 8 N -0.405 5.405 9 O 0.065 5.935 10 C 0.216 3.784 11 C -0.017 4.017 12 C 0.050 3.950 13 H -0.003 1.003 14 C -0.130 4.130 15 C -0.527 4.527 16 H 0.072 0.928 17 C 0.011 3.989 18 N -0.920 5.920 19 Si 0.959 3.041 20 H -0.259 1.259 21 H -0.286 1.286 22 H -0.284 1.284 23 N -0.511 5.511 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.044 0.956 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.044 0.956 38 H 0.056 0.944 39 H 0.011 0.989 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.107 15.104 4.361 16.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.013 3.987 3 C -0.201 4.201 4 O -0.309 6.309 5 C -0.001 4.001 6 C -0.056 4.056 7 C -0.105 4.105 8 N -0.117 5.117 9 O 0.010 5.990 10 C -0.004 4.004 11 C -0.056 4.056 12 C 0.030 3.970 13 H 0.015 0.985 14 C -0.188 4.188 15 C -0.565 4.565 16 H 0.090 0.910 17 C -0.188 4.188 18 N -0.560 5.560 19 Si 0.785 3.215 20 H -0.183 1.183 21 H -0.212 1.212 22 H -0.210 1.210 23 N -0.245 5.245 24 H 0.084 0.916 25 H 0.102 0.898 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.030 0.970 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.480 15.878 4.308 17.051 hybrid contribution -0.671 -1.206 -0.654 1.527 sum 3.809 14.672 3.653 15.592 Atomic orbital electron populations 1.22302 0.95373 1.02039 1.03513 1.22363 0.94326 0.94669 0.87384 1.21856 1.01721 0.93033 1.03510 1.87833 1.86910 1.18998 1.37192 1.22198 0.99459 0.82141 0.96270 1.19749 1.05317 0.81342 0.99213 1.26001 0.85398 1.00171 0.98912 1.74548 1.24548 0.90309 1.22271 1.85275 1.32533 1.18286 1.62897 1.29490 0.81039 0.99537 0.90286 1.20669 1.00426 0.82697 1.01804 1.18604 0.93093 0.95888 0.89365 0.98508 1.21726 0.97624 0.97137 1.02312 1.21472 1.32717 1.04625 0.97707 0.90971 1.25771 0.96998 1.00921 0.95072 1.70049 1.43807 1.39911 1.02217 0.85478 0.77796 0.79586 0.78626 1.18295 1.21245 1.20960 1.71952 1.30456 0.98231 1.23864 0.91587 0.89808 0.93728 0.92133 0.92072 0.89297 0.91677 0.93240 0.93672 0.86948 0.86853 0.86773 0.87114 0.93688 0.92505 0.97044 0.93073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 9.53 71.98 0.69 -2.47 16 2 C 0.07 1.35 3.34 30.59 0.10 1.45 16 3 C -0.14 -2.10 9.56 71.98 0.69 -1.41 16 4 O -0.39 -9.33 9.99 -148.98 -1.49 -10.82 16 5 C 0.08 2.00 5.73 71.98 0.41 2.41 16 6 C -0.02 -0.45 6.21 29.85 0.19 -0.27 16 7 C 0.17 5.65 7.47 138.46 1.03 6.69 16 8 N -0.40 -14.45 12.16 -60.32 -0.73 -15.19 16 9 O 0.06 2.39 10.75 74.85 0.80 3.19 16 10 C 0.22 8.06 6.92 88.38 0.61 8.67 16 11 C -0.02 -0.64 5.26 29.85 0.16 -0.48 16 12 C 0.05 2.37 2.29 -11.54 -0.03 2.35 16 13 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 14 C -0.13 -6.10 8.78 71.98 0.63 -5.47 16 15 C -0.53 -26.78 8.56 25.60 0.22 -26.56 16 16 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 17 C 0.01 0.58 5.30 84.66 0.45 1.03 16 18 N -0.92 -51.86 11.32 21.45 0.24 -51.62 16 19 Si 0.96 41.55 29.54 68.60 2.03 43.58 16 20 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 21 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 23 N -0.51 -19.23 11.55 -303.19 -3.50 -22.74 16 24 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 25 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.04 0.93 7.87 -2.39 -0.02 0.91 16 27 H 0.06 1.16 7.79 -2.38 -0.02 1.14 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 1.29 8.09 -2.38 -0.02 1.27 16 32 H 0.04 1.27 7.87 -2.39 -0.02 1.26 16 33 H 0.11 2.66 8.14 -2.39 -0.02 2.65 16 34 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 36 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 37 H 0.04 1.94 8.14 -2.39 -0.02 1.93 16 38 H 0.06 3.01 6.07 -2.39 -0.01 3.00 16 39 H 0.01 0.47 6.93 -2.39 -0.02 0.46 16 40 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -60.14 335.82 3.51 -56.63 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 1.01 Total: 11.01 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 5.15 Total: -14.06 kcal Atomic # 7 Polarization: -85.55 SS G_CDS: -3.99 Total: -89.54 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -0.68 Total: -7.62 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -60.14 3.51 -56.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395447786.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.502 kcal (2) G-P(sol) polarization free energy of solvation -60.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds