Wall clock time and date at job start Mon Mar 30 2020 07:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47210 * 2 1 4 4 O 1.42904 * 109.46934 * 119.99599 * 2 1 3 5 5 C 1.42904 * 114.00096 * 89.99870 * 4 2 1 6 6 C 1.52996 * 109.47244 * 180.02562 * 5 4 2 7 7 C 1.50696 * 109.46915 * 180.02562 * 6 5 4 8 8 N 1.29956 * 126.28956 * 89.97446 * 7 6 5 9 9 O 1.21297 * 110.25152 * 179.97438 * 8 7 6 10 10 C 1.33645 * 109.81173 * 359.97438 * 9 8 7 11 11 C 1.50695 * 126.55058 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47521 * 180.02562 * 11 10 9 13 13 C 1.53008 * 109.47004 * 300.02436 * 11 10 9 14 14 C 1.52996 * 109.47310 * 60.02217 * 11 10 9 15 15 C 1.50702 * 109.47159 * 174.99934 * 14 11 10 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 11 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 11 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 N 1.31128 * 106.90006 * 0.22611 * 10 9 8 24 24 H 1.09003 * 109.46531 * 60.00162 * 1 2 3 25 25 H 1.08992 * 109.47236 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47227 * 300.00543 * 1 2 3 27 27 H 1.08992 * 109.47737 * 239.99410 * 2 1 3 28 28 H 1.09004 * 109.47280 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.46896 * 299.99392 * 3 2 1 30 30 H 1.09003 * 109.46913 * 59.99755 * 3 2 1 31 31 H 1.09001 * 109.46971 * 59.99842 * 5 4 2 32 32 H 1.08997 * 109.46896 * 300.00509 * 5 4 2 33 33 H 1.08993 * 109.47351 * 60.00248 * 6 5 4 34 34 H 1.09001 * 109.46671 * 300.00019 * 6 5 4 35 35 H 1.09001 * 109.46930 * 299.99977 * 13 11 10 36 36 H 1.08999 * 109.46998 * 60.00229 * 13 11 10 37 37 H 1.09004 * 109.46896 * 180.02562 * 13 11 10 38 38 H 1.09004 * 109.47066 * 55.00137 * 14 11 10 39 39 H 1.08994 * 109.47405 * 294.99967 * 14 11 10 40 40 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2000 -2.0782 0.9888 6 6 2.7077 -2.6926 2.2948 7 6 2.9126 -4.1737 2.1068 8 7 4.0047 -4.7547 1.7087 9 8 3.8474 -5.9564 1.6604 10 6 2.6024 -6.2657 2.0350 11 6 2.0055 -7.6472 2.1126 12 1 0.9715 -7.5779 2.4502 13 6 2.0477 -8.2994 0.7291 14 6 2.8089 -8.4951 3.1007 15 6 2.1413 -9.8354 3.2713 16 1 1.2348 -10.0601 2.7288 17 6 2.6911 -10.7771 4.1152 18 7 3.7951 -10.5035 4.7754 19 14 1.8677 -12.4411 4.3207 20 1 0.6490 -12.4983 3.4742 21 1 2.8082 -13.5133 3.9066 22 1 1.4918 -12.6351 5.7442 23 7 1.9976 -5.1369 2.3169 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8898 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9562 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 2.9319 -2.2468 0.1989 32 1 1.2537 -2.5433 0.7126 33 1 1.9756 -2.5241 3.0844 34 1 3.6540 -2.2275 2.5713 35 1 1.4753 -7.6953 0.0251 36 1 3.0817 -8.3688 0.3915 37 1 1.6155 -9.2986 0.7851 38 1 2.8535 -7.9863 4.0637 39 1 3.8195 -8.6387 2.7185 40 1 4.1817 -11.1659 5.3694 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395453588.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:50 Heat of formation + Delta-G solvation = -9.974279 kcal Electronic energy + Delta-G solvation = -19957.069591 eV Core-core repulsion = 16774.507483 eV Total energy + Delta-G solvation = -3182.562108 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.17308 -38.72886 -36.00027 -35.68074 -33.54275 -32.61142 -31.44244 -29.91703 -27.54157 -27.15928 -24.65590 -24.45931 -22.94947 -21.90057 -21.57367 -19.49316 -17.70307 -17.09842 -16.82014 -16.56508 -15.81284 -15.26079 -14.67901 -14.56019 -14.15056 -13.90451 -13.41595 -13.16952 -12.72946 -12.64929 -12.54772 -12.33787 -12.02969 -11.98989 -11.92317 -11.47694 -11.36706 -11.07824 -11.00504 -10.93461 -10.91617 -10.63088 -10.54247 -10.19202 -9.91261 -9.80944 -9.26860 -9.21333 -8.46590 -6.10193 -4.14197 1.55758 2.50606 3.24553 3.26984 3.33735 3.36422 3.38913 4.07783 4.33608 4.40989 4.56194 4.70956 4.86282 4.92227 4.97886 5.17047 5.26320 5.28104 5.29627 5.45214 5.50818 5.53543 5.65915 5.70140 5.80634 5.83121 5.86852 5.92800 6.00816 6.23243 6.30985 6.53509 6.64875 6.80031 6.96706 7.46426 7.54186 7.85263 8.21105 8.55109 8.90368 9.50404 11.01166 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.045687 B = 0.002985 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.721115 B = 9378.286835 C = 9571.607672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.081 3.919 3 C -0.149 4.149 4 O -0.381 6.381 5 C 0.072 3.928 6 C -0.021 4.021 7 C 0.162 3.838 8 N -0.393 5.393 9 O 0.078 5.922 10 C 0.221 3.779 11 C -0.002 4.002 12 H 0.106 0.894 13 C -0.135 4.135 14 C 0.028 3.972 15 C -0.521 4.521 16 H 0.063 0.937 17 C 0.059 3.941 18 N -0.891 5.891 19 Si 0.895 3.105 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.284 1.284 23 N -0.499 5.499 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.040 0.960 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.022 0.978 39 H 0.029 0.971 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.378 17.585 -9.937 20.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.023 3.977 3 C -0.207 4.207 4 O -0.301 6.301 5 C -0.006 4.006 6 C -0.060 4.060 7 C -0.112 4.112 8 N -0.103 5.103 9 O 0.021 5.979 10 C 0.002 3.998 11 C -0.022 4.022 12 H 0.124 0.876 13 C -0.193 4.193 14 C -0.010 4.010 15 C -0.559 4.559 16 H 0.081 0.919 17 C -0.143 4.143 18 N -0.529 5.529 19 Si 0.723 3.277 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.210 1.210 23 N -0.233 5.233 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.121 0.879 34 H 0.115 0.885 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.040 0.960 39 H 0.048 0.952 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.823 18.321 -9.711 21.085 hybrid contribution -0.402 -1.217 0.078 1.284 sum -4.224 17.104 -9.632 20.080 Atomic orbital electron populations 1.22308 0.95879 1.02602 1.02588 1.22088 0.93760 0.93752 0.88069 1.21864 1.01847 0.94426 1.02523 1.87874 1.86680 1.19670 1.35845 1.22359 0.99990 0.81551 0.96694 1.19605 1.04221 0.83545 0.98653 1.25409 0.86256 0.98917 1.00573 1.74589 1.23620 0.90442 1.21676 1.85283 1.32423 1.17777 1.62443 1.29632 0.80803 0.99093 0.90290 1.20370 1.00688 0.81387 0.99777 0.87579 1.21786 1.02230 1.01727 0.93569 1.19255 0.95352 0.93745 0.92644 1.21089 1.10268 0.98194 1.26328 0.91882 1.25013 0.94920 0.98837 0.95520 1.69978 1.19750 1.35047 1.28160 0.86483 0.79469 0.83760 0.77984 1.19577 1.20961 1.20989 1.71939 1.30467 0.97704 1.23154 0.91678 0.92310 0.91635 0.92235 0.91954 0.91264 0.91701 0.92987 0.92574 0.87939 0.88511 0.94114 0.92291 0.89604 0.95957 0.95229 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 9.53 37.16 0.35 -1.05 16 2 C 0.08 0.72 3.34 -26.73 -0.09 0.63 16 3 C -0.15 -1.09 9.56 37.16 0.36 -0.73 16 4 O -0.38 -4.38 9.99 -35.23 -0.35 -4.74 16 5 C 0.07 0.85 5.73 37.16 0.21 1.06 16 6 C -0.02 -0.28 6.21 -27.89 -0.17 -0.46 16 7 C 0.16 2.76 7.47 -156.36 -1.17 1.59 16 8 N -0.39 -7.30 12.16 30.90 0.38 -6.93 16 9 O 0.08 1.52 11.31 18.10 0.20 1.72 16 10 C 0.22 4.26 7.02 -13.06 -0.09 4.17 16 11 C 0.00 -0.03 2.81 -91.77 -0.26 -0.29 16 12 H 0.11 2.02 8.14 -51.93 -0.42 1.59 16 13 C -0.14 -2.28 8.99 37.16 0.33 -1.95 16 14 C 0.03 0.68 4.43 -27.88 -0.12 0.55 16 15 C -0.52 -13.54 8.41 -34.44 -0.29 -13.83 16 16 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 19 Si 0.90 20.65 29.54 -169.99 -5.02 15.62 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 N -0.50 -9.37 11.55 -9.86 -0.11 -9.49 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.50 7.87 -51.93 -0.41 0.10 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.50 7.79 -51.93 -0.40 0.09 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 32 H 0.06 0.67 7.87 -51.93 -0.41 0.26 16 33 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.09 1.47 6.95 -51.93 -0.36 1.11 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 339.73 15.07 5.12 5.12 Total: -1.00 -29.42 339.73 -6.67 -36.09 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -6.58 Total: -3.57 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -1.03 Total: -8.78 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 1.00 Total: -41.47 kcal Atomic # 8 Polarization: -2.86 SS G_CDS: -0.15 Total: -3.01 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.42 -6.67 -36.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395453588.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.115 kcal (2) G-P(sol) polarization free energy of solvation -29.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds