Wall clock time and date at job start Mon Mar 30 2020 07:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47210 * 2 1 4 4 O 1.42904 * 109.46934 * 119.99599 * 2 1 3 5 5 C 1.42904 * 114.00096 * 89.99870 * 4 2 1 6 6 C 1.52996 * 109.47244 * 180.02562 * 5 4 2 7 7 C 1.50696 * 109.46915 * 180.02562 * 6 5 4 8 8 N 1.29956 * 126.28956 * 89.97446 * 7 6 5 9 9 O 1.21297 * 110.25152 * 179.97438 * 8 7 6 10 10 C 1.33645 * 109.81173 * 359.97438 * 9 8 7 11 11 C 1.50695 * 126.55058 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47521 * 180.02562 * 11 10 9 13 13 C 1.53008 * 109.47004 * 300.02436 * 11 10 9 14 14 C 1.52996 * 109.47310 * 60.02217 * 11 10 9 15 15 C 1.50702 * 109.47159 * 174.99934 * 14 11 10 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 11 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 11 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 N 1.31128 * 106.90006 * 0.22611 * 10 9 8 24 24 H 1.09003 * 109.46531 * 60.00162 * 1 2 3 25 25 H 1.08992 * 109.47236 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47227 * 300.00543 * 1 2 3 27 27 H 1.08992 * 109.47737 * 239.99410 * 2 1 3 28 28 H 1.09004 * 109.47280 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.46896 * 299.99392 * 3 2 1 30 30 H 1.09003 * 109.46913 * 59.99755 * 3 2 1 31 31 H 1.09001 * 109.46971 * 59.99842 * 5 4 2 32 32 H 1.08997 * 109.46896 * 300.00509 * 5 4 2 33 33 H 1.08993 * 109.47351 * 60.00248 * 6 5 4 34 34 H 1.09001 * 109.46671 * 300.00019 * 6 5 4 35 35 H 1.09001 * 109.46930 * 299.99977 * 13 11 10 36 36 H 1.08999 * 109.46998 * 60.00229 * 13 11 10 37 37 H 1.09004 * 109.46896 * 180.02562 * 13 11 10 38 38 H 1.09004 * 109.47066 * 55.00137 * 14 11 10 39 39 H 1.08994 * 109.47405 * 294.99967 * 14 11 10 40 40 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2000 -2.0782 0.9888 6 6 2.7077 -2.6926 2.2948 7 6 2.9126 -4.1737 2.1068 8 7 4.0047 -4.7547 1.7087 9 8 3.8474 -5.9564 1.6604 10 6 2.6024 -6.2657 2.0350 11 6 2.0055 -7.6472 2.1126 12 1 0.9715 -7.5779 2.4502 13 6 2.0477 -8.2994 0.7291 14 6 2.8089 -8.4951 3.1007 15 6 2.1413 -9.8354 3.2713 16 1 1.2348 -10.0601 2.7288 17 6 2.6911 -10.7771 4.1152 18 7 3.7951 -10.5035 4.7754 19 14 1.8677 -12.4411 4.3207 20 1 0.6490 -12.4983 3.4742 21 1 2.8082 -13.5133 3.9066 22 1 1.4918 -12.6351 5.7442 23 7 1.9976 -5.1369 2.3169 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8898 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9562 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 2.9319 -2.2468 0.1989 32 1 1.2537 -2.5433 0.7126 33 1 1.9756 -2.5241 3.0844 34 1 3.6540 -2.2275 2.5713 35 1 1.4753 -7.6953 0.0251 36 1 3.0817 -8.3688 0.3915 37 1 1.6155 -9.2986 0.7851 38 1 2.8535 -7.9863 4.0637 39 1 3.8195 -8.6387 2.7185 40 1 4.1817 -11.1659 5.3694 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395453588.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:49 Heat of formation + Delta-G solvation = -28.139422 kcal Electronic energy + Delta-G solvation = -19957.857291 eV Core-core repulsion = 16774.507483 eV Total energy + Delta-G solvation = -3183.349808 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.63475 -39.55617 -37.56532 -37.12978 -34.80237 -34.14225 -32.79369 -31.14548 -28.99920 -28.13144 -26.29614 -25.63004 -24.57979 -23.33437 -22.30223 -20.98430 -19.15114 -18.64781 -18.23207 -17.87386 -16.79027 -16.51149 -16.20713 -16.00235 -15.39056 -14.88335 -14.77385 -14.43111 -14.11856 -13.81653 -13.60474 -13.47821 -13.14792 -13.06062 -12.99238 -12.79792 -12.78836 -12.63946 -12.35904 -12.28024 -12.22335 -12.08755 -11.89262 -11.64903 -11.57142 -11.23198 -10.82680 -10.62452 -10.55527 -8.17774 -6.28224 0.06705 1.09660 1.46307 1.47602 1.59866 1.82210 2.24886 2.45110 2.83615 3.10724 3.18017 3.79746 3.83344 3.99771 4.06444 4.13626 4.18422 4.23355 4.27143 4.28311 4.45636 4.65504 4.70121 4.74676 4.83688 4.87678 4.89175 4.90343 4.95033 5.04830 5.08670 5.27355 5.32312 5.37248 5.41592 5.58733 5.80469 6.16655 6.17261 6.86276 7.07188 7.41160 8.95032 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.045687 B = 0.002985 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.721115 B = 9378.286835 C = 9571.607672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.071 3.929 3 C -0.147 4.147 4 O -0.394 6.394 5 C 0.081 3.919 6 C -0.021 4.021 7 C 0.171 3.829 8 N -0.405 5.405 9 O 0.061 5.939 10 C 0.215 3.785 11 C 0.008 3.992 12 H 0.114 0.886 13 C -0.129 4.129 14 C 0.035 3.965 15 C -0.526 4.526 16 H 0.079 0.921 17 C -0.001 4.001 18 N -0.936 5.936 19 Si 0.966 3.034 20 H -0.253 1.253 21 H -0.282 1.282 22 H -0.285 1.285 23 N -0.507 5.507 24 H 0.084 0.916 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.085 0.915 38 H -0.013 1.013 39 H 0.005 0.995 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.882 18.157 -11.196 22.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.014 3.986 3 C -0.204 4.204 4 O -0.314 6.314 5 C 0.003 3.997 6 C -0.059 4.059 7 C -0.102 4.102 8 N -0.118 5.118 9 O 0.008 5.992 10 C -0.004 4.004 11 C -0.012 4.012 12 H 0.132 0.868 13 C -0.187 4.187 14 C -0.003 4.003 15 C -0.564 4.564 16 H 0.098 0.902 17 C -0.198 4.198 18 N -0.576 5.576 19 Si 0.791 3.209 20 H -0.177 1.177 21 H -0.208 1.208 22 H -0.211 1.211 23 N -0.241 5.241 24 H 0.102 0.898 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.006 0.994 39 H 0.024 0.976 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.337 18.885 -10.994 22.495 hybrid contribution 0.075 -1.272 0.473 1.359 sum -5.262 17.613 -10.521 21.180 Atomic orbital electron populations 1.22295 0.95173 1.02286 1.03386 1.22362 0.94430 0.94435 0.87416 1.21875 1.01653 0.93434 1.03421 1.87855 1.86974 1.19211 1.37344 1.22182 0.99829 0.82018 0.95665 1.19776 1.05185 0.81160 0.99812 1.26033 0.85284 1.00183 0.98692 1.74590 1.24293 0.90114 1.22807 1.85271 1.32568 1.18412 1.62972 1.29561 0.80949 0.99237 0.90654 1.20167 0.99923 0.81024 1.00093 0.86807 1.21744 1.02668 1.01889 0.92368 1.19052 0.94956 0.94101 0.92196 1.21534 1.10507 0.98612 1.25736 0.90244 1.25966 0.95492 1.02996 0.95380 1.70124 1.21638 1.36498 1.29338 0.85377 0.78903 0.78760 0.77885 1.17688 1.20813 1.21140 1.71954 1.31011 0.97908 1.23194 0.89755 0.93161 0.91989 0.91648 0.92276 0.89192 0.91987 0.92873 0.92710 0.87152 0.87423 0.91203 0.92566 0.89664 0.99414 0.97631 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 9.53 71.98 0.69 -1.78 16 2 C 0.07 1.14 3.34 30.59 0.10 1.24 16 3 C -0.15 -1.85 9.56 71.98 0.69 -1.17 16 4 O -0.39 -8.49 9.99 -148.98 -1.49 -9.98 16 5 C 0.08 1.81 5.73 71.98 0.41 2.22 16 6 C -0.02 -0.52 6.21 29.85 0.19 -0.33 16 7 C 0.17 5.72 7.47 138.46 1.03 6.76 16 8 N -0.41 -14.94 12.16 -60.29 -0.73 -15.68 16 9 O 0.06 2.40 11.31 74.82 0.85 3.25 16 10 C 0.22 8.28 7.02 88.38 0.62 8.90 16 11 C 0.01 0.32 2.81 -11.54 -0.03 0.29 16 12 H 0.11 4.21 8.14 -2.39 -0.02 4.19 16 13 C -0.13 -4.15 8.99 71.98 0.65 -3.51 16 14 C 0.03 1.74 4.43 29.85 0.13 1.87 16 15 C -0.53 -27.31 8.41 25.60 0.22 -27.10 16 16 H 0.08 3.79 7.06 -2.91 -0.02 3.77 16 17 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 18 N -0.94 -55.42 13.29 21.45 0.28 -55.13 16 19 Si 0.97 42.11 29.54 68.60 2.03 44.13 16 20 H -0.25 -10.22 7.11 99.48 0.71 -9.52 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.29 -12.42 7.11 99.48 0.71 -11.72 16 23 N -0.51 -18.68 11.55 -303.17 -3.50 -22.18 16 24 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.05 0.79 7.87 -2.39 -0.02 0.77 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.07 0.97 7.79 -2.39 -0.02 0.96 16 28 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 1.17 8.08 -2.39 -0.02 1.15 16 32 H 0.05 1.23 7.87 -2.39 -0.02 1.21 16 33 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.07 1.85 8.14 -2.39 -0.02 1.84 16 36 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.08 2.76 6.95 -2.38 -0.02 2.74 16 38 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 39 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.26 14.68 8.31 -92.70 -0.77 13.91 16 Total: -1.00 -63.07 339.73 3.59 -59.48 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 1.00 Total: 8.29 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: 5.15 Total: -12.18 kcal Atomic # 7 Polarization: -89.04 SS G_CDS: -3.95 Total: -92.99 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.64 Total: -6.73 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -63.07 3.59 -59.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395453588.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.341 kcal (2) G-P(sol) polarization free energy of solvation -63.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds