Wall clock time and date at job start Mon Mar 30 2020 07:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42902 * 109.47288 * 2 1 4 4 C 1.42897 * 113.99865 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.47131 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47214 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.46915 * 179.97438 * 6 5 4 8 8 N 1.29956 * 126.28956 * 89.97446 * 7 6 5 9 9 O 1.21297 * 110.25152 * 179.97438 * 8 7 6 10 10 C 1.33645 * 109.81173 * 359.97438 * 9 8 7 11 11 C 1.50695 * 126.55058 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47521 * 180.02562 * 11 10 9 13 13 C 1.53008 * 109.47004 * 300.02436 * 11 10 9 14 14 C 1.52996 * 109.47310 * 60.02217 * 11 10 9 15 15 C 1.50702 * 109.47159 * 174.99934 * 14 11 10 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 11 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 11 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 N 1.31128 * 106.90006 * 0.22611 * 10 9 8 24 24 H 1.09002 * 109.47405 * 300.00391 * 1 2 3 25 25 H 1.09004 * 109.46560 * 60.00148 * 1 2 3 26 26 H 1.08993 * 109.47150 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47405 * 239.99609 * 2 1 3 28 28 H 1.09004 * 109.46560 * 119.99851 * 2 1 3 29 29 H 1.08991 * 109.47631 * 59.99740 * 4 3 2 30 30 H 1.09007 * 109.47487 * 299.99598 * 4 3 2 31 31 H 1.09001 * 109.47373 * 59.99220 * 5 4 3 32 32 H 1.08997 * 109.46524 * 299.99869 * 5 4 3 33 33 H 1.08993 * 109.47351 * 59.99774 * 6 5 4 34 34 H 1.09001 * 109.46671 * 299.99544 * 6 5 4 35 35 H 1.09001 * 109.46930 * 299.99977 * 13 11 10 36 36 H 1.08999 * 109.46998 * 60.00229 * 13 11 10 37 37 H 1.09004 * 109.46896 * 180.02562 * 13 11 10 38 38 H 1.09004 * 109.47066 * 55.00137 * 14 11 10 39 39 H 1.08994 * 109.47405 * 294.99967 * 14 11 10 40 40 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8255 2.9383 0.0012 6 6 5.3507 3.0591 0.0012 7 6 5.7393 4.5151 0.0011 8 7 5.9371 5.2584 1.0486 9 8 6.2384 6.3846 0.7134 10 6 6.2625 6.4691 -0.6201 11 6 6.5899 7.6931 -1.4360 12 1 6.5260 7.4505 -2.4968 13 6 5.5938 8.8069 -1.1067 14 6 8.0078 8.1626 -1.1047 15 6 8.3806 9.3105 -2.0072 16 1 7.6765 9.6695 -2.7432 17 6 9.6184 9.9065 -1.8891 18 7 10.4757 9.4695 -0.9926 19 14 10.0775 11.3342 -3.0026 20 1 8.9465 11.6321 -3.9176 21 1 10.3732 12.5317 -2.1756 22 1 11.2779 10.9744 -3.7995 23 7 5.9416 5.2850 -1.0831 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 3.8341 0.9764 -0.8890 30 1 3.8333 0.9767 0.8909 31 1 3.4223 3.4217 0.8911 32 1 3.4231 3.4220 -0.8888 33 1 5.7534 2.5759 -0.8890 34 1 5.7534 2.5752 0.8910 35 1 4.5836 8.4724 -1.3427 36 1 5.6578 9.0495 -0.0460 37 1 5.8304 9.6921 -1.6972 38 1 8.7073 7.3403 -1.2550 39 1 8.0490 8.4893 -0.0657 40 1 11.3466 9.8886 -0.9098 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395459966.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:35 Heat of formation + Delta-G solvation = -12.991187 kcal Electronic energy + Delta-G solvation = -19678.930381 eV Core-core repulsion = 16496.237450 eV Total energy + Delta-G solvation = -3182.692931 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.11007 -38.45434 -36.12212 -35.78540 -33.81272 -32.50199 -31.43886 -30.52222 -27.14415 -26.94958 -24.62049 -23.23320 -23.09716 -22.51056 -21.54044 -19.50249 -17.55685 -17.09156 -16.73272 -16.66441 -16.41585 -15.07058 -14.95324 -14.58725 -14.42530 -13.82175 -13.32449 -13.18101 -13.15517 -12.63030 -12.48906 -12.18754 -11.96957 -11.81736 -11.77132 -11.38448 -11.23731 -11.05574 -11.04307 -10.97813 -10.89005 -10.57688 -10.52383 -10.16586 -9.89038 -9.87523 -9.24832 -9.17845 -8.45510 -6.09145 -4.12977 1.61994 2.58949 3.27704 3.31242 3.35217 3.38004 3.41122 3.97387 4.33302 4.42085 4.68151 4.74907 4.78146 4.93012 4.99635 5.04777 5.16882 5.23100 5.27420 5.37403 5.41501 5.54831 5.59964 5.73274 5.76502 5.84091 5.93646 5.97617 6.05009 6.27401 6.36035 6.56672 6.67768 6.82948 6.91787 7.47830 7.56026 7.86521 8.22567 8.60851 8.91619 9.51485 11.02189 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.048856 B = 0.002740 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.972383 B =10215.398699 C =10380.144250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.390 6.390 4 C 0.066 3.934 5 C -0.113 4.113 6 C -0.020 4.020 7 C 0.162 3.838 8 N -0.397 5.397 9 O 0.076 5.924 10 C 0.220 3.780 11 C -0.002 4.002 12 H 0.106 0.894 13 C -0.135 4.135 14 C 0.028 3.972 15 C -0.520 4.520 16 H 0.063 0.937 17 C 0.059 3.941 18 N -0.891 5.891 19 Si 0.896 3.104 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.284 1.284 23 N -0.501 5.501 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.040 0.960 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.022 0.978 39 H 0.029 0.971 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.767 -15.459 1.776 21.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.310 6.310 4 C -0.011 4.011 5 C -0.151 4.151 6 C -0.059 4.059 7 C -0.111 4.111 8 N -0.107 5.107 9 O 0.019 5.981 10 C 0.001 3.999 11 C -0.022 4.022 12 H 0.124 0.876 13 C -0.193 4.193 14 C -0.010 4.010 15 C -0.558 4.558 16 H 0.081 0.919 17 C -0.143 4.143 18 N -0.530 5.530 19 Si 0.723 3.277 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.210 1.210 23 N -0.234 5.234 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.040 0.960 39 H 0.048 0.952 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.879 -15.881 2.358 21.889 hybrid contribution 0.724 0.584 -0.559 1.085 sum -14.155 -15.297 1.800 20.919 Atomic orbital electron populations 1.21749 0.93753 1.02195 1.03239 1.22459 0.95637 0.83817 1.00059 1.87889 1.21192 1.26430 1.95449 1.22444 0.81235 0.96976 1.00428 1.21434 0.93920 0.95482 1.04299 1.19713 0.95737 0.85879 1.04587 1.25563 1.01338 0.99829 0.84361 1.74569 1.19929 0.91931 1.24258 1.85274 1.62711 1.24632 1.25444 1.29602 0.91618 0.97091 0.81581 1.20356 1.00612 0.84823 0.96421 0.87625 1.21785 0.96097 0.98673 1.02770 1.19249 0.86604 0.96797 0.98318 1.21098 1.00216 1.15729 1.18787 0.91873 1.25017 0.96439 0.97360 0.95524 1.69980 1.07399 1.41482 1.34093 0.86479 0.78530 0.82131 0.80529 1.19568 1.20975 1.21016 1.71922 1.20959 1.01417 1.29123 0.91831 0.91791 0.91126 0.93369 0.93434 0.92904 0.93080 0.90727 0.90310 0.88615 0.89190 0.94069 0.92308 0.89643 0.95997 0.95249 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.63 16 2 C 0.06 0.45 6.66 37.16 0.25 0.69 16 3 O -0.39 -4.25 10.34 -35.23 -0.36 -4.61 16 4 C 0.07 0.62 5.94 37.16 0.22 0.84 16 5 C -0.11 -1.27 5.57 -26.73 -0.15 -1.42 16 6 C -0.02 -0.24 5.84 -27.89 -0.16 -0.41 16 7 C 0.16 2.77 7.47 -156.36 -1.17 1.60 16 8 N -0.40 -7.44 12.16 30.90 0.38 -7.07 16 9 O 0.08 1.50 11.31 18.10 0.20 1.71 16 10 C 0.22 4.32 7.02 -13.06 -0.09 4.22 16 11 C 0.00 -0.03 2.81 -91.77 -0.26 -0.29 16 12 H 0.11 2.04 8.14 -51.93 -0.42 1.61 16 13 C -0.14 -2.33 8.99 37.16 0.33 -2.00 16 14 C 0.03 0.69 4.43 -27.88 -0.12 0.57 16 15 C -0.52 -13.61 8.41 -34.44 -0.29 -13.90 16 16 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 19 Si 0.90 20.74 29.54 -169.99 -5.02 15.71 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 N -0.50 -9.49 11.55 -9.86 -0.11 -9.61 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.08 1.49 6.95 -51.93 -0.36 1.13 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 340.96 15.07 5.14 5.14 Total: -1.00 -30.28 340.96 -6.83 -37.11 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -6.63 Total: -4.02 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -1.16 Total: -9.23 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 1.00 Total: -41.80 kcal Atomic # 8 Polarization: -2.75 SS G_CDS: -0.16 Total: -2.91 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.28 -6.83 -37.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395459966.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.116 kcal (2) G-P(sol) polarization free energy of solvation -30.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds