Wall clock time and date at job start Mon Mar 30 2020 07:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42902 * 109.47288 * 2 1 4 4 C 1.42897 * 113.99865 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.47131 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47214 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.46915 * 179.97438 * 6 5 4 8 8 N 1.29956 * 126.28956 * 89.97446 * 7 6 5 9 9 O 1.21297 * 110.25152 * 179.97438 * 8 7 6 10 10 C 1.33645 * 109.81173 * 359.97438 * 9 8 7 11 11 C 1.50695 * 126.55058 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47521 * 180.02562 * 11 10 9 13 13 C 1.53008 * 109.47004 * 300.02436 * 11 10 9 14 14 C 1.52996 * 109.47310 * 60.02217 * 11 10 9 15 15 C 1.50702 * 109.47159 * 174.99934 * 14 11 10 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 11 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 11 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 N 1.31128 * 106.90006 * 0.22611 * 10 9 8 24 24 H 1.09002 * 109.47405 * 300.00391 * 1 2 3 25 25 H 1.09004 * 109.46560 * 60.00148 * 1 2 3 26 26 H 1.08993 * 109.47150 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47405 * 239.99609 * 2 1 3 28 28 H 1.09004 * 109.46560 * 119.99851 * 2 1 3 29 29 H 1.08991 * 109.47631 * 59.99740 * 4 3 2 30 30 H 1.09007 * 109.47487 * 299.99598 * 4 3 2 31 31 H 1.09001 * 109.47373 * 59.99220 * 5 4 3 32 32 H 1.08997 * 109.46524 * 299.99869 * 5 4 3 33 33 H 1.08993 * 109.47351 * 59.99774 * 6 5 4 34 34 H 1.09001 * 109.46671 * 299.99544 * 6 5 4 35 35 H 1.09001 * 109.46930 * 299.99977 * 13 11 10 36 36 H 1.08999 * 109.46998 * 60.00229 * 13 11 10 37 37 H 1.09004 * 109.46896 * 180.02562 * 13 11 10 38 38 H 1.09004 * 109.47066 * 55.00137 * 14 11 10 39 39 H 1.08994 * 109.47405 * 294.99967 * 14 11 10 40 40 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8255 2.9383 0.0012 6 6 5.3507 3.0591 0.0012 7 6 5.7393 4.5151 0.0011 8 7 5.9371 5.2584 1.0486 9 8 6.2384 6.3846 0.7134 10 6 6.2625 6.4691 -0.6201 11 6 6.5899 7.6931 -1.4360 12 1 6.5260 7.4505 -2.4968 13 6 5.5938 8.8069 -1.1067 14 6 8.0078 8.1626 -1.1047 15 6 8.3806 9.3105 -2.0072 16 1 7.6765 9.6695 -2.7432 17 6 9.6184 9.9065 -1.8891 18 7 10.4757 9.4695 -0.9926 19 14 10.0775 11.3342 -3.0026 20 1 8.9465 11.6321 -3.9176 21 1 10.3732 12.5317 -2.1756 22 1 11.2779 10.9744 -3.7995 23 7 5.9416 5.2850 -1.0831 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 3.8341 0.9764 -0.8890 30 1 3.8333 0.9767 0.8909 31 1 3.4223 3.4217 0.8911 32 1 3.4231 3.4220 -0.8888 33 1 5.7534 2.5759 -0.8890 34 1 5.7534 2.5752 0.8910 35 1 4.5836 8.4724 -1.3427 36 1 5.6578 9.0495 -0.0460 37 1 5.8304 9.6921 -1.6972 38 1 8.7073 7.3403 -1.2550 39 1 8.0490 8.4893 -0.0657 40 1 11.3466 9.8886 -0.9098 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395459966.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:35 Heat of formation + Delta-G solvation = -32.120618 kcal Electronic energy + Delta-G solvation = -19679.759895 eV Core-core repulsion = 16496.237450 eV Total energy + Delta-G solvation = -3183.522445 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.57558 -39.17979 -37.56129 -37.29057 -35.07252 -34.26823 -32.50143 -31.64880 -29.00364 -27.92581 -26.28834 -24.70573 -23.99265 -23.68185 -22.65224 -20.99260 -19.05291 -18.64148 -18.24269 -17.58453 -17.32292 -16.51351 -16.29993 -15.91268 -15.54236 -15.15513 -14.59296 -14.42950 -14.05342 -14.03033 -13.76766 -13.51113 -13.17736 -13.05403 -12.80210 -12.66765 -12.53676 -12.51071 -12.40286 -12.24117 -12.13445 -11.93582 -11.91122 -11.78722 -11.56012 -11.23197 -10.78600 -10.55590 -10.55283 -8.17813 -6.28284 0.11336 1.17825 1.46242 1.47428 1.59906 1.85980 2.42313 2.49630 2.82664 3.07354 3.17712 3.80505 3.94010 4.10401 4.11608 4.16467 4.18725 4.28145 4.34003 4.46594 4.47715 4.51429 4.52691 4.65112 4.84977 4.86125 4.87620 5.00899 5.04113 5.06875 5.08037 5.10686 5.26898 5.36227 5.41308 5.58475 5.80315 6.16691 6.27258 6.86015 7.12016 7.40931 8.94911 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.048856 B = 0.002740 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.972383 B =10215.398699 C =10380.144250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.049 3.951 3 O -0.418 6.418 4 C 0.068 3.932 5 C -0.104 4.104 6 C -0.019 4.019 7 C 0.170 3.830 8 N -0.411 5.411 9 O 0.056 5.944 10 C 0.213 3.787 11 C 0.008 3.992 12 H 0.113 0.887 13 C -0.129 4.129 14 C 0.036 3.964 15 C -0.527 4.527 16 H 0.079 0.921 17 C -0.001 4.001 18 N -0.935 5.935 19 Si 0.967 3.033 20 H -0.254 1.254 21 H -0.282 1.282 22 H -0.285 1.285 23 N -0.509 5.509 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.091 0.909 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.085 0.915 38 H -0.012 1.012 39 H 0.004 0.996 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.940 -16.254 0.765 22.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 O -0.338 6.338 4 C -0.008 4.008 5 C -0.143 4.143 6 C -0.058 4.058 7 C -0.103 4.103 8 N -0.125 5.125 9 O 0.004 5.996 10 C -0.007 4.007 11 C -0.012 4.012 12 H 0.131 0.869 13 C -0.187 4.187 14 C -0.002 4.002 15 C -0.564 4.564 16 H 0.097 0.903 17 C -0.199 4.199 18 N -0.575 5.575 19 Si 0.792 3.208 20 H -0.177 1.177 21 H -0.208 1.208 22 H -0.211 1.211 23 N -0.243 5.243 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.110 0.890 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.006 0.994 39 H 0.023 0.977 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.070 -16.657 1.344 23.184 hybrid contribution 1.054 0.724 -0.216 1.297 sum -15.016 -15.933 1.128 21.923 Atomic orbital electron populations 1.21784 0.93236 1.03391 1.02512 1.22675 0.96172 0.82671 1.01145 1.87850 1.21898 1.28388 1.95687 1.22437 0.80956 0.95444 1.01983 1.21310 0.93029 0.97012 1.02946 1.19988 0.96422 0.82850 1.06501 1.26435 0.99230 1.01395 0.83266 1.74569 1.21143 0.91827 1.24963 1.85257 1.63369 1.25442 1.25535 1.29536 0.92090 0.97346 0.81699 1.20150 0.98367 0.85863 0.96843 0.86864 1.21740 0.96738 0.97629 1.02574 1.19039 0.88987 0.95422 0.96736 1.21536 1.00429 1.15689 1.18787 0.90288 1.25977 0.96600 1.00297 0.97030 1.70125 1.07938 1.43273 1.36191 0.85362 0.78461 0.78415 0.78591 1.17736 1.20827 1.21075 1.71941 1.21165 1.01322 1.29890 0.92536 0.92527 0.88988 0.92262 0.92285 0.91350 0.91452 0.92049 0.91722 0.86789 0.87142 0.91369 0.92646 0.89639 0.99359 0.97733 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 10.28 71.98 0.74 -1.07 16 2 C 0.05 0.68 6.66 71.98 0.48 1.16 16 3 O -0.42 -8.47 10.34 -148.98 -1.54 -10.01 16 4 C 0.07 1.13 5.94 71.98 0.43 1.55 16 5 C -0.10 -2.20 5.57 30.59 0.17 -2.03 16 6 C -0.02 -0.42 5.84 29.85 0.17 -0.25 16 7 C 0.17 5.66 7.47 138.46 1.03 6.69 16 8 N -0.41 -15.40 12.16 -60.29 -0.73 -16.13 16 9 O 0.06 2.25 11.31 74.82 0.85 3.10 16 10 C 0.21 8.36 7.02 88.38 0.62 8.98 16 11 C 0.01 0.32 2.81 -11.54 -0.03 0.29 16 12 H 0.11 4.28 8.14 -2.39 -0.02 4.26 16 13 C -0.13 -4.31 8.99 71.98 0.65 -3.67 16 14 C 0.04 1.82 4.43 29.85 0.13 1.95 16 15 C -0.53 -27.59 8.41 25.60 0.22 -27.37 16 16 H 0.08 3.81 7.06 -2.91 -0.02 3.79 16 17 C 0.00 -0.07 5.46 84.66 0.46 0.40 16 18 N -0.94 -55.52 13.29 21.45 0.28 -55.24 16 19 Si 0.97 42.34 29.54 68.60 2.03 44.37 16 20 H -0.25 -10.32 7.11 99.48 0.71 -9.61 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 23 N -0.51 -19.00 11.55 -303.17 -3.50 -22.50 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 26 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.07 1.91 8.14 -2.39 -0.02 1.90 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.08 2.85 6.95 -2.38 -0.02 2.84 16 38 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 39 H 0.00 0.23 8.14 -2.39 -0.02 0.22 16 40 H 0.26 14.71 8.31 -92.70 -0.77 13.94 16 Total: -1.00 -65.70 340.96 3.45 -62.25 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: 1.00 Total: 7.53 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: 5.07 Total: -13.36 kcal Atomic # 7 Polarization: -89.93 SS G_CDS: -3.95 Total: -93.88 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -0.70 Total: -6.91 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -65.70 3.45 -62.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395459966.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.128 kcal (2) G-P(sol) polarization free energy of solvation -65.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds