Wall clock time and date at job start Mon Mar 30 2020 07:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47608 * 2 1 4 4 C 1.42898 * 113.99957 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.46818 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.46856 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47070 * 179.97438 * 6 5 4 8 8 N 1.29946 * 126.29198 * 270.02327 * 7 6 5 9 9 O 1.21298 * 110.25505 * 179.68388 * 8 7 6 10 10 C 1.33643 * 109.80846 * 0.46943 * 9 8 7 11 11 C 1.50699 * 126.54930 * 179.80105 * 10 9 8 12 12 H 1.09004 * 109.46963 * 179.68504 * 11 10 9 13 13 C 1.53004 * 109.47110 * 59.69075 * 11 10 9 14 14 C 1.52997 * 109.47337 * 299.68812 * 11 10 9 15 15 C 1.50701 * 109.47212 * 184.99952 * 14 11 10 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 11 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 11 18 18 N 1.31512 * 119.99594 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99875 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47061 * 90.00257 * 19 17 15 21 21 H 1.48497 * 109.46906 * 209.99430 * 19 17 15 22 22 H 1.48498 * 109.47403 * 329.99876 * 19 17 15 23 23 N 1.31130 * 106.89670 * 359.53964 * 10 9 8 24 24 H 1.09005 * 109.47177 * 59.99423 * 1 2 3 25 25 H 1.08997 * 109.47753 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46774 * 300.00055 * 1 2 3 27 27 H 1.09006 * 109.46774 * 239.99945 * 2 1 3 28 28 H 1.08996 * 109.47361 * 120.00695 * 2 1 3 29 29 H 1.09000 * 109.46715 * 60.00838 * 4 3 2 30 30 H 1.08998 * 109.47484 * 300.00335 * 4 3 2 31 31 H 1.08991 * 109.47032 * 60.00050 * 5 4 3 32 32 H 1.09003 * 109.46798 * 299.99479 * 5 4 3 33 33 H 1.09001 * 109.47224 * 59.99529 * 6 5 4 34 34 H 1.08998 * 109.47246 * 299.99765 * 6 5 4 35 35 H 1.09004 * 109.46741 * 299.99564 * 13 11 10 36 36 H 1.09000 * 109.47403 * 59.99699 * 13 11 10 37 37 H 1.09001 * 109.46917 * 180.02562 * 13 11 10 38 38 H 1.09002 * 109.47153 * 64.99954 * 14 11 10 39 39 H 1.09001 * 109.46832 * 305.00144 * 14 11 10 40 40 H 0.97002 * 119.99739 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4599 0.0006 5 6 3.8256 2.9382 0.0012 6 6 5.3508 3.0589 0.0012 7 6 5.7394 4.5149 0.0011 8 7 5.9374 5.2581 -1.0463 9 8 6.2321 6.3860 -0.7113 10 6 6.2607 6.4695 0.6223 11 6 6.5873 7.6937 1.4380 12 1 6.5229 7.4513 2.4988 13 6 5.5912 8.8072 1.1080 14 6 8.0054 8.1635 1.1075 15 6 8.3774 9.3117 2.0099 16 1 7.6730 9.6702 2.7459 17 6 9.6174 9.9038 1.8966 18 7 9.9422 10.9055 2.6845 19 14 10.8359 9.2833 0.6240 20 1 10.6417 10.0227 -0.6491 21 1 12.2198 9.5009 1.1165 22 1 10.6149 7.8331 0.3929 23 7 5.9448 5.2840 1.0852 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.8340 0.9763 -0.8893 30 1 3.8334 0.9765 0.8907 31 1 3.4225 3.4215 0.8911 32 1 3.4232 3.4220 -0.8889 33 1 5.7535 2.5756 -0.8890 34 1 5.7535 2.5750 0.8909 35 1 5.6557 9.0496 0.0472 36 1 4.5809 8.4725 1.3435 37 1 5.8278 9.6929 1.6977 38 1 8.0470 8.4899 0.0683 39 1 8.7049 7.3413 1.2584 40 1 10.8144 11.3223 2.6045 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395459970.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:38 Heat of formation + Delta-G solvation = -9.044885 kcal Electronic energy + Delta-G solvation = -19745.086352 eV Core-core repulsion = 16562.564546 eV Total energy + Delta-G solvation = -3182.521806 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.23951 -38.49273 -36.22946 -35.93248 -33.88773 -32.49434 -31.51292 -30.66289 -27.74567 -27.02533 -24.62539 -23.30140 -23.12785 -22.37955 -21.48522 -19.51238 -17.67482 -17.27211 -16.99899 -16.77976 -16.53223 -15.13542 -15.02801 -14.66815 -14.21624 -13.88442 -13.50340 -13.26037 -13.22770 -12.84558 -12.53749 -12.25261 -12.17683 -11.88317 -11.82581 -11.52240 -11.28436 -11.23540 -11.11726 -11.10198 -10.94800 -10.68756 -10.23497 -10.21203 -9.92468 -9.90430 -9.40869 -9.29921 -8.62417 -6.12977 -4.12928 1.49049 2.47708 3.23299 3.27267 3.29670 3.35222 3.38726 3.87976 4.24951 4.38378 4.64596 4.70287 4.73573 4.87208 4.96100 5.00885 5.11257 5.16071 5.20324 5.30490 5.37853 5.48821 5.53733 5.63225 5.71729 5.74177 5.86582 5.90469 5.96741 6.17707 6.23888 6.45568 6.50743 6.80833 6.88209 7.00467 7.14660 7.62031 8.39144 8.48656 8.89062 9.47849 10.99377 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.044233 B = 0.002937 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.854640 B = 9532.175302 C = 9796.242755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.390 6.390 4 C 0.066 3.934 5 C -0.113 4.113 6 C -0.021 4.021 7 C 0.164 3.836 8 N -0.396 5.396 9 O 0.074 5.926 10 C 0.215 3.785 11 C 0.009 3.991 12 H 0.112 0.888 13 C -0.137 4.137 14 C -0.008 4.008 15 C -0.520 4.520 16 H 0.080 0.920 17 C 0.072 3.928 18 N -0.897 5.897 19 Si 0.875 3.125 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.267 1.267 23 N -0.496 5.496 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.057 0.943 36 H 0.043 0.957 37 H 0.090 0.910 38 H 0.024 0.976 39 H 0.022 0.978 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.763 -18.976 -5.677 24.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.309 6.309 4 C -0.011 4.011 5 C -0.152 4.152 6 C -0.060 4.060 7 C -0.110 4.110 8 N -0.106 5.106 9 O 0.018 5.982 10 C -0.004 4.004 11 C -0.012 4.012 12 H 0.130 0.870 13 C -0.195 4.195 14 C -0.046 4.046 15 C -0.558 4.558 16 H 0.098 0.902 17 C -0.130 4.130 18 N -0.535 5.535 19 Si 0.702 3.298 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.191 1.191 23 N -0.230 5.230 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.109 0.891 38 H 0.042 0.958 39 H 0.040 0.960 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.894 -19.299 -6.142 24.561 hybrid contribution 1.072 -0.391 -0.604 1.291 sum -12.823 -19.690 -6.746 24.446 Atomic orbital electron populations 1.21751 0.93725 1.02218 1.03255 1.22459 0.95660 0.83781 1.00061 1.87889 1.21136 1.26466 1.95448 1.22438 0.81300 0.96912 1.00430 1.21433 0.93815 0.95564 1.04342 1.19729 0.95848 0.85758 1.04635 1.25595 1.01174 0.99908 0.84274 1.74571 1.20005 0.91805 1.24236 1.85268 1.62954 1.24572 1.25454 1.29639 0.92058 0.97130 0.81592 1.20135 0.99353 0.84874 0.96811 0.87007 1.21806 0.96147 0.98761 1.02797 1.19722 0.89277 0.97536 0.98086 1.20918 1.01258 1.14488 1.19151 0.90174 1.24945 0.97946 0.94536 0.95588 1.69888 1.21883 1.23236 1.38480 0.86854 0.80780 0.80013 0.82154 1.20010 1.21219 1.19137 1.71933 1.20613 1.01351 1.29095 0.91835 0.91108 0.91764 0.93440 0.93354 0.93089 0.92893 0.90247 0.90720 0.89171 0.88544 0.92361 0.93792 0.89113 0.95776 0.96017 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.16 0.38 -0.60 16 2 C 0.06 0.43 6.66 37.16 0.25 0.68 16 3 O -0.39 -4.12 10.34 -35.23 -0.36 -4.48 16 4 C 0.07 0.59 5.94 37.16 0.22 0.81 16 5 C -0.11 -1.21 5.57 -26.73 -0.15 -1.36 16 6 C -0.02 -0.24 5.84 -27.89 -0.16 -0.40 16 7 C 0.16 2.65 7.47 -156.37 -1.17 1.48 16 8 N -0.40 -7.03 12.16 30.90 0.38 -6.65 16 9 O 0.07 1.38 11.31 18.10 0.20 1.58 16 10 C 0.22 3.99 7.02 -13.06 -0.09 3.90 16 11 C 0.01 0.16 2.81 -91.77 -0.26 -0.09 16 12 H 0.11 2.09 8.14 -51.93 -0.42 1.67 16 13 C -0.14 -2.31 8.99 37.16 0.33 -1.98 16 14 C -0.01 -0.18 3.50 -27.88 -0.10 -0.28 16 15 C -0.52 -13.73 8.96 -34.44 -0.31 -14.04 16 16 H 0.08 2.22 7.30 -52.49 -0.38 1.83 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 18 N -0.90 -26.46 13.96 55.43 0.77 -25.69 16 19 Si 0.87 21.10 27.47 -169.99 -4.67 16.43 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 23 N -0.50 -8.98 11.55 -9.87 -0.11 -9.10 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.09 1.62 6.95 -51.93 -0.36 1.26 16 38 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 39 H 0.02 0.51 7.20 -51.93 -0.37 0.13 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 337.35 15.07 5.08 5.08 Total: -1.00 -30.39 337.35 -6.45 -36.84 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -6.60 Total: -4.05 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -1.15 Total: -9.97 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 1.04 Total: -41.44 kcal Atomic # 8 Polarization: -2.74 SS G_CDS: -0.16 Total: -2.90 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.39 -6.45 -36.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395459970.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.797 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds