Wall clock time and date at job start Mon Mar 30 2020 07:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47608 * 2 1 4 4 C 1.42898 * 113.99957 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.46818 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.46856 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47070 * 179.97438 * 6 5 4 8 8 N 1.29946 * 126.29198 * 270.02327 * 7 6 5 9 9 O 1.21298 * 110.25505 * 179.68388 * 8 7 6 10 10 C 1.33643 * 109.80846 * 0.46943 * 9 8 7 11 11 C 1.50699 * 126.54930 * 179.80105 * 10 9 8 12 12 H 1.09004 * 109.46963 * 179.68504 * 11 10 9 13 13 C 1.53004 * 109.47110 * 59.69075 * 11 10 9 14 14 C 1.52997 * 109.47337 * 299.68812 * 11 10 9 15 15 C 1.50701 * 109.47212 * 184.99952 * 14 11 10 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 11 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 11 18 18 N 1.31512 * 119.99594 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99875 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47061 * 90.00257 * 19 17 15 21 21 H 1.48497 * 109.46906 * 209.99430 * 19 17 15 22 22 H 1.48498 * 109.47403 * 329.99876 * 19 17 15 23 23 N 1.31130 * 106.89670 * 359.53964 * 10 9 8 24 24 H 1.09005 * 109.47177 * 59.99423 * 1 2 3 25 25 H 1.08997 * 109.47753 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46774 * 300.00055 * 1 2 3 27 27 H 1.09006 * 109.46774 * 239.99945 * 2 1 3 28 28 H 1.08996 * 109.47361 * 120.00695 * 2 1 3 29 29 H 1.09000 * 109.46715 * 60.00838 * 4 3 2 30 30 H 1.08998 * 109.47484 * 300.00335 * 4 3 2 31 31 H 1.08991 * 109.47032 * 60.00050 * 5 4 3 32 32 H 1.09003 * 109.46798 * 299.99479 * 5 4 3 33 33 H 1.09001 * 109.47224 * 59.99529 * 6 5 4 34 34 H 1.08998 * 109.47246 * 299.99765 * 6 5 4 35 35 H 1.09004 * 109.46741 * 299.99564 * 13 11 10 36 36 H 1.09000 * 109.47403 * 59.99699 * 13 11 10 37 37 H 1.09001 * 109.46917 * 180.02562 * 13 11 10 38 38 H 1.09002 * 109.47153 * 64.99954 * 14 11 10 39 39 H 1.09001 * 109.46832 * 305.00144 * 14 11 10 40 40 H 0.97002 * 119.99739 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4599 0.0006 5 6 3.8256 2.9382 0.0012 6 6 5.3508 3.0589 0.0012 7 6 5.7394 4.5149 0.0011 8 7 5.9374 5.2581 -1.0463 9 8 6.2321 6.3860 -0.7113 10 6 6.2607 6.4695 0.6223 11 6 6.5873 7.6937 1.4380 12 1 6.5229 7.4513 2.4988 13 6 5.5912 8.8072 1.1080 14 6 8.0054 8.1635 1.1075 15 6 8.3774 9.3117 2.0099 16 1 7.6730 9.6702 2.7459 17 6 9.6174 9.9038 1.8966 18 7 9.9422 10.9055 2.6845 19 14 10.8359 9.2833 0.6240 20 1 10.6417 10.0227 -0.6491 21 1 12.2198 9.5009 1.1165 22 1 10.6149 7.8331 0.3929 23 7 5.9448 5.2840 1.0852 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.8340 0.9763 -0.8893 30 1 3.8334 0.9765 0.8907 31 1 3.4225 3.4215 0.8911 32 1 3.4232 3.4220 -0.8889 33 1 5.7535 2.5756 -0.8890 34 1 5.7535 2.5750 0.8909 35 1 5.6557 9.0496 0.0472 36 1 4.5809 8.4725 1.3435 37 1 5.8278 9.6929 1.6977 38 1 8.0470 8.4899 0.0683 39 1 8.7049 7.3413 1.2584 40 1 10.8144 11.3223 2.6045 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395459970.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:38 Heat of formation + Delta-G solvation = -28.646940 kcal Electronic energy + Delta-G solvation = -19745.936361 eV Core-core repulsion = 16562.564546 eV Total energy + Delta-G solvation = -3183.371815 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.60628 -39.18235 -37.62343 -37.32293 -35.06587 -34.30749 -32.58882 -31.68105 -29.54300 -27.93483 -26.19266 -24.62895 -23.80564 -23.68330 -22.60663 -20.95595 -19.15411 -19.03812 -18.26653 -17.59255 -17.32684 -16.53845 -16.17413 -15.90103 -15.53096 -15.33725 -14.76610 -14.59134 -14.03724 -14.02155 -13.89930 -13.54521 -13.20315 -13.14218 -12.97559 -12.67446 -12.54124 -12.52269 -12.41711 -12.15573 -11.94210 -11.90309 -11.88734 -11.77505 -11.73083 -11.34330 -10.84151 -10.74654 -10.55560 -8.26483 -6.29729 0.08731 1.15968 1.36892 1.39428 1.48473 1.81192 2.36678 2.46215 2.80232 3.05104 3.08726 3.78569 3.93311 4.08537 4.10221 4.11936 4.17431 4.19501 4.33234 4.46276 4.47053 4.50251 4.51890 4.61675 4.82079 4.84754 4.86394 4.94192 5.00419 5.02645 5.06628 5.09944 5.18135 5.26539 5.31031 5.45430 5.60911 6.27042 6.27125 6.76745 7.10470 7.33852 8.88780 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.044233 B = 0.002937 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.854640 B = 9532.175302 C = 9796.242755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.418 6.418 4 C 0.068 3.932 5 C -0.105 4.105 6 C -0.019 4.019 7 C 0.170 3.830 8 N -0.408 5.408 9 O 0.061 5.939 10 C 0.211 3.789 11 C 0.016 3.984 12 H 0.111 0.889 13 C -0.132 4.132 14 C -0.004 4.004 15 C -0.516 4.516 16 H 0.056 0.944 17 C 0.014 3.986 18 N -0.942 5.942 19 Si 0.934 3.066 20 H -0.265 1.265 21 H -0.285 1.285 22 H -0.257 1.257 23 N -0.507 5.507 24 H 0.056 0.944 25 H 0.091 0.909 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.029 0.971 39 H 0.016 0.984 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.131 -21.357 -6.797 26.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.026 4.026 3 O -0.338 6.338 4 C -0.009 4.009 5 C -0.144 4.144 6 C -0.058 4.058 7 C -0.103 4.103 8 N -0.121 5.121 9 O 0.008 5.992 10 C -0.009 4.009 11 C -0.005 4.005 12 H 0.129 0.871 13 C -0.190 4.190 14 C -0.042 4.042 15 C -0.554 4.554 16 H 0.074 0.926 17 C -0.184 4.184 18 N -0.583 5.583 19 Si 0.759 3.241 20 H -0.190 1.190 21 H -0.211 1.211 22 H -0.181 1.181 23 N -0.241 5.241 24 H 0.075 0.925 25 H 0.110 0.890 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.047 0.953 39 H 0.034 0.966 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.273 -21.677 -7.272 26.953 hybrid contribution 1.090 0.299 -0.210 1.150 sum -13.183 -21.377 -7.482 26.206 Atomic orbital electron populations 1.21787 0.93284 1.03381 1.02504 1.22667 0.96137 0.82683 1.01142 1.87851 1.21943 1.28367 1.95685 1.22446 0.80940 0.95511 1.01975 1.21317 0.93176 0.96957 1.02924 1.19986 0.96290 0.82963 1.06556 1.26408 0.99327 1.01397 0.83207 1.74573 1.21013 0.91724 1.24785 1.85255 1.63416 1.25217 1.25293 1.29403 0.92633 0.97092 0.81752 1.19915 0.97766 0.85834 0.96949 0.87089 1.21748 0.96880 0.97473 1.02852 1.19601 0.91463 0.95835 0.97330 1.21186 1.00565 1.15011 1.18683 0.92584 1.25766 1.00082 0.94847 0.97665 1.70017 1.22613 1.24983 1.40656 0.85899 0.78383 0.79955 0.79898 1.19032 1.21074 1.18102 1.71954 1.20788 1.01399 1.29935 0.92532 0.89009 0.92555 0.92252 0.92290 0.91399 0.91409 0.91811 0.92016 0.87030 0.86800 0.91810 0.91441 0.90559 0.95252 0.96592 0.92465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.28 71.98 0.74 -1.00 16 2 C 0.05 0.65 6.66 71.98 0.48 1.13 16 3 O -0.42 -8.15 10.34 -148.98 -1.54 -9.69 16 4 C 0.07 1.04 5.94 71.98 0.43 1.47 16 5 C -0.10 -2.07 5.57 30.60 0.17 -1.89 16 6 C -0.02 -0.39 5.84 29.85 0.17 -0.21 16 7 C 0.17 5.18 7.47 138.46 1.03 6.22 16 8 N -0.41 -13.85 12.16 -60.32 -0.73 -14.59 16 9 O 0.06 2.20 11.31 74.84 0.85 3.05 16 10 C 0.21 7.57 7.02 88.38 0.62 8.19 16 11 C 0.02 0.58 2.81 -11.54 -0.03 0.55 16 12 H 0.11 4.12 8.14 -2.39 -0.02 4.10 16 13 C -0.13 -4.34 8.99 71.98 0.65 -3.69 16 14 C 0.00 -0.18 3.50 29.85 0.10 -0.07 16 15 C -0.52 -27.50 8.96 25.60 0.23 -27.27 16 16 H 0.06 3.18 7.30 -2.91 -0.02 3.16 16 17 C 0.01 0.80 5.47 84.66 0.46 1.26 16 18 N -0.94 -56.60 13.96 21.45 0.30 -56.30 16 19 Si 0.93 43.18 27.47 68.60 1.88 45.06 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.26 -11.36 6.54 99.48 0.65 -10.71 16 23 N -0.51 -17.57 11.55 -303.20 -3.50 -21.07 16 24 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 25 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.08 2.73 6.95 -2.39 -0.02 2.72 16 38 H 0.03 1.28 7.57 -2.39 -0.02 1.26 16 39 H 0.02 0.72 7.20 -2.39 -0.02 0.71 16 40 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -64.82 337.35 3.26 -61.56 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: 0.95 Total: 7.29 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: 5.06 Total: -15.32 kcal Atomic # 7 Polarization: -88.02 SS G_CDS: -3.94 Total: -91.95 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.69 Total: -6.64 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.88 Total: 45.06 kcal Total: -64.82 3.26 -61.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395459970.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.915 kcal (2) G-P(sol) polarization free energy of solvation -64.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds