Wall clock time and date at job start Mon Mar 30 2020 07:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00195 * 2 1 4 4 C 1.52994 * 109.47596 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47024 * 60.00257 * 4 3 2 6 6 C 1.53005 * 109.47383 * 300.00350 * 4 3 2 7 7 C 1.50699 * 109.47365 * 180.02562 * 4 3 2 8 8 N 1.29946 * 126.28558 * 359.97438 * 7 4 3 9 9 O 1.21302 * 110.25147 * 180.02562 * 8 7 4 10 10 C 1.33648 * 109.80858 * 0.02562 * 9 8 7 11 11 C 1.50701 * 126.54863 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.46909 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.47421 * 60.02165 * 11 10 9 14 14 C 1.52997 * 109.47011 * 300.02095 * 11 10 9 15 15 C 1.50706 * 109.47238 * 184.99962 * 14 11 10 16 16 H 1.07999 * 119.99515 * 0.02562 * 15 14 11 17 17 C 1.37870 * 120.00176 * 180.02562 * 15 14 11 18 18 N 1.31520 * 119.99883 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00043 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47293 * 89.99746 * 19 17 15 21 21 H 1.48504 * 109.47104 * 209.99992 * 19 17 15 22 22 H 1.48495 * 109.47249 * 329.99739 * 19 17 15 23 23 N 1.31130 * 106.89986 * 0.22313 * 10 9 8 24 24 H 1.08999 * 109.47159 * 300.00060 * 1 2 3 25 25 H 1.08995 * 109.46918 * 60.00015 * 1 2 3 26 26 H 1.08998 * 109.46935 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46850 * 59.99932 * 3 2 1 28 28 H 1.08998 * 109.47061 * 300.00085 * 3 2 1 29 29 H 1.09002 * 109.47762 * 180.02562 * 5 4 3 30 30 H 1.09012 * 109.47078 * 300.00082 * 5 4 3 31 31 H 1.09006 * 109.47350 * 59.99364 * 5 4 3 32 32 H 1.09000 * 109.46717 * 299.99766 * 6 4 3 33 33 H 1.08998 * 109.46974 * 59.99646 * 6 4 3 34 34 H 1.08997 * 109.46868 * 179.97438 * 6 4 3 35 35 H 1.09004 * 109.46776 * 59.99636 * 13 11 10 36 36 H 1.08993 * 109.46967 * 179.97438 * 13 11 10 37 37 H 1.08997 * 109.46762 * 300.00554 * 13 11 10 38 38 H 1.09001 * 109.46832 * 65.00276 * 14 11 10 39 39 H 1.09000 * 109.47611 * 305.00573 * 14 11 10 40 40 H 0.97004 * 119.99507 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9874 0.4253 -1.2483 6 6 3.9865 0.4256 1.2502 7 6 4.1484 2.5614 0.0013 8 7 3.5043 3.6900 0.0008 9 8 4.2845 4.6188 0.0011 10 6 5.5386 4.1567 0.0011 11 6 6.7992 4.9825 0.0009 12 1 7.6662 4.3219 0.0006 13 6 6.8310 5.8653 1.2502 14 6 6.8303 5.8653 -1.2483 15 6 8.1450 6.5994 -1.3121 16 1 8.8844 6.4507 -0.5392 17 6 8.4036 7.4607 -2.3572 18 7 7.5028 7.6420 -3.2982 19 14 10.0334 8.3700 -2.4366 20 1 11.0189 7.5547 -3.1911 21 1 9.8404 9.6730 -3.1224 22 1 10.5366 8.6053 -1.0595 23 7 5.4625 2.8477 -0.0039 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6886 1.8464 0.8901 28 1 1.6886 1.8463 -0.8900 29 1 5.0740 0.3388 -1.2477 30 1 3.5441 -0.5706 -1.2483 31 1 3.6660 0.9660 -2.1386 32 1 3.6645 0.9667 2.1399 33 1 3.5432 -0.5702 1.2501 34 1 5.0730 0.3392 1.2503 35 1 6.8088 5.2363 2.1401 36 1 7.7430 6.4621 1.2501 37 1 5.9639 6.5258 1.2504 38 1 6.0136 6.5859 -1.2044 39 1 6.7182 5.2429 -2.1361 40 1 7.6850 8.2478 -4.0336 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395494487.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:30 Heat of formation + Delta-G solvation = -4.335494 kcal Electronic energy + Delta-G solvation = -20725.354549 eV Core-core repulsion = 17543.036957 eV Total energy + Delta-G solvation = -3182.317592 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.14134 -38.80161 -36.42186 -35.83786 -33.93846 -32.42396 -30.68889 -27.67167 -27.32513 -27.14562 -25.86885 -24.53598 -23.87236 -22.64252 -20.79675 -18.87845 -17.58958 -17.03154 -16.60363 -16.14795 -15.99765 -15.56320 -14.59960 -14.42612 -14.31258 -13.80645 -13.45824 -13.35577 -12.64119 -12.47157 -12.22201 -11.97690 -11.89283 -11.88305 -11.52034 -11.43964 -11.31265 -11.02321 -11.00599 -10.88645 -10.85375 -10.54064 -10.48635 -10.16665 -9.90113 -9.85050 -9.27083 -9.19079 -8.45642 -6.09585 -4.13639 1.60948 2.62164 3.28187 3.28873 3.34293 3.36264 3.39339 4.00622 4.32213 4.43065 4.72534 4.84367 4.91931 5.11996 5.13659 5.26880 5.35176 5.41756 5.46949 5.50759 5.71374 5.72573 5.76880 5.81492 5.83114 5.90152 6.03786 6.17219 6.22233 6.30656 6.35141 6.55587 6.66616 6.81599 6.91173 7.46983 7.55017 7.85769 8.21825 8.58996 8.90712 9.50933 11.01722 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.038567 B = 0.003680 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.834213 B = 7607.284598 C = 7733.549464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.076 3.924 4 C 0.036 3.964 5 C -0.134 4.134 6 C -0.132 4.132 7 C 0.173 3.827 8 N -0.400 5.400 9 O 0.075 5.925 10 C 0.220 3.780 11 C -0.001 4.001 12 H 0.106 0.894 13 C -0.135 4.135 14 C 0.029 3.971 15 C -0.521 4.521 16 H 0.062 0.938 17 C 0.060 3.940 18 N -0.891 5.891 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.272 1.272 23 N -0.494 5.494 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.086 0.914 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.040 0.960 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.029 0.971 39 H 0.022 0.978 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.761 -12.561 7.829 17.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.304 6.304 3 C -0.001 4.001 4 C 0.034 3.966 5 C -0.192 4.192 6 C -0.190 4.190 7 C -0.100 4.100 8 N -0.111 5.111 9 O 0.019 5.981 10 C 0.001 3.999 11 C -0.022 4.022 12 H 0.124 0.876 13 C -0.193 4.193 14 C -0.009 4.009 15 C -0.559 4.559 16 H 0.081 0.919 17 C -0.142 4.142 18 N -0.530 5.530 19 Si 0.723 3.277 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 N -0.227 5.227 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.105 0.895 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.047 0.953 39 H 0.040 0.960 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.407 -12.978 7.660 18.315 hybrid contribution 0.660 0.994 -0.281 1.226 sum -9.747 -11.985 7.378 17.120 Atomic orbital electron populations 1.22732 0.80873 1.02647 1.00144 1.87802 1.19674 1.27445 1.95486 1.22381 0.91888 0.84497 1.01305 1.18732 0.92454 0.86275 0.99156 1.21786 1.02350 1.00151 0.94880 1.21770 1.02263 1.00185 0.94775 1.25410 0.87216 0.96173 1.01248 1.74544 1.17466 0.96505 1.22546 1.85267 1.15300 1.31779 1.65766 1.29627 0.89521 0.89212 0.91507 1.20358 0.85636 0.95435 1.00752 0.87606 1.21779 1.04184 0.99047 0.94279 1.19241 0.98689 0.93621 0.89338 1.21054 1.00820 1.25255 1.08794 0.91941 1.25004 0.96949 0.96756 0.95529 1.69971 1.34204 1.36864 1.11936 0.86539 0.83714 0.79153 0.78292 1.20607 1.21218 1.19703 1.71844 1.16886 1.11646 1.22312 0.94080 0.94014 0.89530 0.92655 0.92534 0.91247 0.90643 0.92652 0.92849 0.90636 0.91319 0.94090 0.89641 0.92338 0.95288 0.96010 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.43 9.35 -35.23 -0.33 -4.76 16 3 C 0.08 0.97 4.30 37.15 0.16 1.13 16 4 C 0.04 0.50 0.82 -155.66 -0.13 0.37 16 5 C -0.13 -1.74 8.31 37.16 0.31 -1.43 16 6 C -0.13 -1.61 8.31 37.16 0.31 -1.30 16 7 C 0.17 3.00 6.40 -156.37 -1.00 1.99 16 8 N -0.40 -7.43 11.47 30.90 0.35 -7.08 16 9 O 0.07 1.46 11.31 18.09 0.20 1.67 16 10 C 0.22 4.27 7.02 -13.05 -0.09 4.18 16 11 C 0.00 -0.03 2.81 -91.77 -0.26 -0.28 16 12 H 0.11 2.02 8.14 -51.93 -0.42 1.60 16 13 C -0.13 -2.30 8.99 37.16 0.33 -1.97 16 14 C 0.03 0.70 4.43 -27.88 -0.12 0.58 16 15 C -0.52 -13.59 8.41 -34.44 -0.29 -13.87 16 16 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -25.82 13.29 55.43 0.74 -25.09 16 19 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 N -0.49 -9.29 11.55 -9.86 -0.11 -9.41 16 24 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.86 7.68 -51.92 -0.40 0.46 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.81 7.68 -51.93 -0.40 0.42 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 1.48 6.95 -51.93 -0.36 1.12 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 LS Contribution 335.77 15.07 5.06 5.06 Total: -1.00 -29.22 335.77 -5.46 -34.68 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -6.58 Total: -3.05 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 0.23 Total: -7.68 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.98 Total: -41.57 kcal Atomic # 8 Polarization: -2.97 SS G_CDS: -0.13 Total: -3.09 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.22 -5.46 -34.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395494487.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.341 kcal (2) G-P(sol) polarization free energy of solvation -29.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds