Wall clock time and date at job start Mon Mar 30 2020 07:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00195 * 2 1 4 4 C 1.52994 * 109.47596 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47024 * 60.00257 * 4 3 2 6 6 C 1.53005 * 109.47383 * 300.00350 * 4 3 2 7 7 C 1.50699 * 109.47365 * 180.02562 * 4 3 2 8 8 N 1.29946 * 126.28558 * 359.97438 * 7 4 3 9 9 O 1.21302 * 110.25147 * 180.02562 * 8 7 4 10 10 C 1.33648 * 109.80858 * 0.02562 * 9 8 7 11 11 C 1.50701 * 126.54863 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.46909 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.47421 * 60.02165 * 11 10 9 14 14 C 1.52997 * 109.47011 * 300.02095 * 11 10 9 15 15 C 1.50706 * 109.47238 * 184.99962 * 14 11 10 16 16 H 1.07999 * 119.99515 * 0.02562 * 15 14 11 17 17 C 1.37870 * 120.00176 * 180.02562 * 15 14 11 18 18 N 1.31520 * 119.99883 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00043 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47293 * 89.99746 * 19 17 15 21 21 H 1.48504 * 109.47104 * 209.99992 * 19 17 15 22 22 H 1.48495 * 109.47249 * 329.99739 * 19 17 15 23 23 N 1.31130 * 106.89986 * 0.22313 * 10 9 8 24 24 H 1.08999 * 109.47159 * 300.00060 * 1 2 3 25 25 H 1.08995 * 109.46918 * 60.00015 * 1 2 3 26 26 H 1.08998 * 109.46935 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46850 * 59.99932 * 3 2 1 28 28 H 1.08998 * 109.47061 * 300.00085 * 3 2 1 29 29 H 1.09002 * 109.47762 * 180.02562 * 5 4 3 30 30 H 1.09012 * 109.47078 * 300.00082 * 5 4 3 31 31 H 1.09006 * 109.47350 * 59.99364 * 5 4 3 32 32 H 1.09000 * 109.46717 * 299.99766 * 6 4 3 33 33 H 1.08998 * 109.46974 * 59.99646 * 6 4 3 34 34 H 1.08997 * 109.46868 * 179.97438 * 6 4 3 35 35 H 1.09004 * 109.46776 * 59.99636 * 13 11 10 36 36 H 1.08993 * 109.46967 * 179.97438 * 13 11 10 37 37 H 1.08997 * 109.46762 * 300.00554 * 13 11 10 38 38 H 1.09001 * 109.46832 * 65.00276 * 14 11 10 39 39 H 1.09000 * 109.47611 * 305.00573 * 14 11 10 40 40 H 0.97004 * 119.99507 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9874 0.4253 -1.2483 6 6 3.9865 0.4256 1.2502 7 6 4.1484 2.5614 0.0013 8 7 3.5043 3.6900 0.0008 9 8 4.2845 4.6188 0.0011 10 6 5.5386 4.1567 0.0011 11 6 6.7992 4.9825 0.0009 12 1 7.6662 4.3219 0.0006 13 6 6.8310 5.8653 1.2502 14 6 6.8303 5.8653 -1.2483 15 6 8.1450 6.5994 -1.3121 16 1 8.8844 6.4507 -0.5392 17 6 8.4036 7.4607 -2.3572 18 7 7.5028 7.6420 -3.2982 19 14 10.0334 8.3700 -2.4366 20 1 11.0189 7.5547 -3.1911 21 1 9.8404 9.6730 -3.1224 22 1 10.5366 8.6053 -1.0595 23 7 5.4625 2.8477 -0.0039 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6886 1.8464 0.8901 28 1 1.6886 1.8463 -0.8900 29 1 5.0740 0.3388 -1.2477 30 1 3.5441 -0.5706 -1.2483 31 1 3.6660 0.9660 -2.1386 32 1 3.6645 0.9667 2.1399 33 1 3.5432 -0.5702 1.2501 34 1 5.0730 0.3392 1.2503 35 1 6.8088 5.2363 2.1401 36 1 7.7430 6.4621 1.2501 37 1 5.9639 6.5258 1.2504 38 1 6.0136 6.5859 -1.2044 39 1 6.7182 5.2429 -2.1361 40 1 7.6850 8.2478 -4.0336 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395494487.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:29 Heat of formation + Delta-G solvation = -22.917457 kcal Electronic energy + Delta-G solvation = -20726.160323 eV Core-core repulsion = 17543.036957 eV Total energy + Delta-G solvation = -3183.123366 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.61348 -39.79135 -37.62558 -37.43363 -35.35649 -34.29744 -32.22411 -29.02186 -28.49345 -28.33469 -26.83704 -26.16954 -25.17397 -24.36239 -22.27901 -20.20373 -19.08945 -18.63306 -18.23607 -17.30229 -16.88330 -16.68405 -16.48921 -15.93634 -15.43022 -14.99836 -14.77235 -14.42421 -14.36393 -13.83356 -13.60640 -13.44399 -13.05227 -12.86556 -12.83865 -12.80620 -12.66116 -12.60383 -12.34744 -12.26857 -12.22554 -12.14537 -11.91887 -11.70041 -11.56081 -11.25148 -10.80012 -10.72317 -10.54617 -8.17675 -6.28330 0.10095 1.17700 1.47356 1.47568 1.58546 1.84884 2.20868 2.45367 2.83226 3.06410 3.17973 3.68503 3.75987 3.80594 4.09571 4.20778 4.28490 4.32777 4.39767 4.49011 4.54852 4.56274 4.71960 4.73231 4.78355 4.82795 4.83480 4.84354 5.00933 5.04639 5.08514 5.20337 5.24526 5.36907 5.41264 5.58629 5.80198 6.06570 6.16619 6.85874 7.09705 7.41108 8.94901 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.038567 B = 0.003680 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.834213 B = 7607.284598 C = 7733.549464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.392 6.392 3 C 0.085 3.915 4 C 0.029 3.971 5 C -0.129 4.129 6 C -0.125 4.125 7 C 0.180 3.820 8 N -0.410 5.410 9 O 0.057 5.943 10 C 0.214 3.786 11 C 0.009 3.991 12 H 0.114 0.886 13 C -0.128 4.128 14 C 0.037 3.963 15 C -0.527 4.527 16 H 0.079 0.921 17 C 0.000 4.000 18 N -0.936 5.936 19 Si 0.965 3.035 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.255 1.255 23 N -0.499 5.499 24 H 0.048 0.952 25 H 0.044 0.956 26 H 0.108 0.892 27 H 0.054 0.946 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.004 0.996 39 H -0.013 1.013 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.314 -13.660 9.213 18.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.311 6.311 3 C 0.008 3.992 4 C 0.028 3.972 5 C -0.187 4.187 6 C -0.183 4.183 7 C -0.094 4.094 8 N -0.123 5.123 9 O 0.005 5.995 10 C -0.005 4.005 11 C -0.012 4.012 12 H 0.132 0.868 13 C -0.186 4.186 14 C -0.001 4.001 15 C -0.565 4.565 16 H 0.097 0.903 17 C -0.197 4.197 18 N -0.576 5.576 19 Si 0.790 3.210 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.179 1.179 23 N -0.233 5.233 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.126 0.874 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.114 0.886 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.023 0.977 39 H 0.005 0.995 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.957 -14.070 9.066 19.475 hybrid contribution 0.422 1.244 -0.729 1.503 sum -9.535 -12.825 8.338 18.025 Atomic orbital electron populations 1.22969 0.79170 1.04290 1.00672 1.87778 1.21466 1.26344 1.95529 1.22183 0.91098 0.85199 1.00754 1.19007 0.93264 0.84540 1.00436 1.21761 1.02007 1.00928 0.93969 1.21736 1.02051 1.00799 0.93691 1.26079 0.86696 0.97260 0.99361 1.74545 1.17455 0.96773 1.23503 1.85255 1.15454 1.32447 1.66315 1.29564 0.89493 0.89541 0.91948 1.20155 0.86173 0.95192 0.99635 0.86823 1.21733 1.03981 0.98940 0.93959 1.19030 0.97462 0.93222 0.90394 1.21505 1.01493 1.24677 1.08859 0.90268 1.25957 1.00618 0.97908 0.95255 1.70121 1.36581 1.38021 1.12861 0.85432 0.79100 0.77444 0.79004 1.20202 1.21465 1.17863 1.71852 1.17778 1.11271 1.22381 0.93346 0.93729 0.87359 0.92810 0.93554 0.91885 0.88572 0.93722 0.92846 0.88782 0.91737 0.91240 0.89695 0.92650 0.97743 0.99502 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 11.01 113.37 1.25 1.61 16 2 O -0.39 -8.20 9.35 -148.98 -1.39 -9.60 16 3 C 0.09 2.07 4.30 71.98 0.31 2.38 16 4 C 0.03 0.78 0.82 -52.93 -0.04 0.74 16 5 C -0.13 -3.20 8.31 71.98 0.60 -2.60 16 6 C -0.12 -2.81 8.31 71.98 0.60 -2.21 16 7 C 0.18 6.15 6.40 138.46 0.89 7.03 16 8 N -0.41 -15.27 11.47 -60.30 -0.69 -15.96 16 9 O 0.06 2.29 11.31 74.79 0.85 3.14 16 10 C 0.21 8.32 7.02 88.38 0.62 8.94 16 11 C 0.01 0.34 2.81 -11.54 -0.03 0.31 16 12 H 0.11 4.24 8.14 -2.39 -0.02 4.22 16 13 C -0.13 -4.20 8.99 71.98 0.65 -3.56 16 14 C 0.04 1.85 4.43 29.85 0.13 1.98 16 15 C -0.53 -27.51 8.41 25.60 0.22 -27.30 16 16 H 0.08 3.79 7.06 -2.91 -0.02 3.77 16 17 C 0.00 0.03 5.46 84.65 0.46 0.49 16 18 N -0.94 -55.52 13.29 21.45 0.28 -55.24 16 19 Si 0.97 42.18 29.54 68.60 2.03 44.20 16 20 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 21 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.25 -10.34 7.11 99.48 0.71 -9.63 16 23 N -0.50 -18.61 11.55 -303.18 -3.50 -22.11 16 24 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.10 1.98 7.68 -2.38 -0.02 1.97 16 31 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.09 1.78 7.68 -2.39 -0.02 1.76 16 34 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 35 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.08 2.79 6.95 -2.39 -0.02 2.78 16 37 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 39 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 40 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -62.83 335.77 4.22 -58.61 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 1.00 Total: 9.14 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: 5.64 Total: -12.19 kcal Atomic # 7 Polarization: -89.40 SS G_CDS: -3.91 Total: -93.31 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -0.55 Total: -6.46 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -62.83 4.22 -58.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395494487.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.695 kcal (2) G-P(sol) polarization free energy of solvation -62.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds