Wall clock time and date at job start Mon Mar 30 2020 07:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 113.99738 * 2 1 4 4 C 1.52998 * 109.46797 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47510 * 59.99737 * 4 3 2 6 6 C 1.53006 * 109.47182 * 299.99564 * 4 3 2 7 7 C 1.50699 * 109.46945 * 180.02562 * 4 3 2 8 8 N 1.29941 * 126.28711 * 0.02562 * 7 4 3 9 9 O 1.21310 * 110.25200 * 179.68965 * 8 7 4 10 10 C 1.33644 * 109.80606 * 0.47027 * 9 8 7 11 11 C 1.50695 * 126.54863 * 179.80245 * 10 9 8 12 12 H 1.09000 * 109.47521 * 179.68886 * 11 10 9 13 13 C 1.53008 * 109.47004 * 299.68875 * 11 10 9 14 14 C 1.52996 * 109.47310 * 59.68656 * 11 10 9 15 15 C 1.50702 * 109.47159 * 174.99934 * 14 11 10 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 11 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 11 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 N 1.31129 * 106.90211 * 359.53980 * 10 9 8 24 24 H 1.08996 * 109.47532 * 60.00246 * 1 2 3 25 25 H 1.09007 * 109.47116 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47169 * 299.99662 * 1 2 3 27 27 H 1.08995 * 109.47175 * 60.00075 * 3 2 1 28 28 H 1.09002 * 109.46793 * 299.99798 * 3 2 1 29 29 H 1.09001 * 109.46990 * 179.97438 * 5 4 3 30 30 H 1.09002 * 109.47029 * 300.00347 * 5 4 3 31 31 H 1.09000 * 109.46997 * 60.00208 * 5 4 3 32 32 H 1.08995 * 109.47293 * 300.00466 * 6 4 3 33 33 H 1.09002 * 109.46713 * 60.00047 * 6 4 3 34 34 H 1.08995 * 109.47364 * 180.02562 * 6 4 3 35 35 H 1.09004 * 109.46896 * 180.02562 * 13 11 10 36 36 H 1.09001 * 109.46930 * 299.99977 * 13 11 10 37 37 H 1.08999 * 109.46998 * 60.00229 * 13 11 10 38 38 H 1.09004 * 109.47066 * 55.00137 * 14 11 10 39 39 H 1.08994 * 109.47405 * 294.99967 * 14 11 10 40 40 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9864 0.4256 -1.2501 6 6 3.9874 0.4253 1.2484 7 6 4.1483 2.5614 0.0000 8 7 3.5042 3.6900 0.0014 9 8 4.2845 4.6188 0.0077 10 6 5.5385 4.1567 0.0007 11 6 6.7991 4.9824 0.0008 12 1 7.6662 4.3219 -0.0004 13 6 6.8298 5.8665 -1.2477 14 6 6.8313 5.8640 1.2508 15 6 8.1460 6.5979 1.3142 16 1 8.8846 6.4507 0.5402 17 6 8.4035 7.4622 2.3573 18 7 7.5039 7.6418 3.2997 19 14 10.0300 8.3777 2.4318 20 1 9.9020 9.6732 1.7172 21 1 10.3924 8.6284 3.8499 22 1 11.0886 7.5596 1.7875 23 7 5.4625 2.8477 -0.0005 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6885 1.8464 0.8899 28 1 1.6885 1.8464 -0.8900 29 1 5.0730 0.3400 -1.2507 30 1 3.5430 -0.5702 -1.2501 31 1 3.6645 0.9667 -2.1399 32 1 3.6661 0.9660 2.1385 33 1 3.5440 -0.5705 1.2484 34 1 5.0739 0.3396 1.2482 35 1 7.7419 6.4634 -1.2478 36 1 6.8069 5.2384 -2.1382 37 1 5.9628 6.5271 -1.2465 38 1 6.7200 5.2406 2.1380 39 1 6.0147 6.5846 1.2084 40 1 7.6852 8.2496 4.0337 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395494490.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:33 Heat of formation + Delta-G solvation = -4.337669 kcal Electronic energy + Delta-G solvation = -20725.302695 eV Core-core repulsion = 17542.985009 eV Total energy + Delta-G solvation = -3182.317686 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.14060 -38.80134 -36.42142 -35.83818 -33.93813 -32.42385 -30.68956 -27.67115 -27.32581 -27.14598 -25.86905 -24.53557 -23.87273 -22.64177 -20.79665 -18.87812 -17.58909 -17.03140 -16.60449 -16.14785 -15.99758 -15.56297 -14.59886 -14.42516 -14.31228 -13.80577 -13.45816 -13.35721 -12.64237 -12.47248 -12.22367 -11.97759 -11.89250 -11.88269 -11.51935 -11.44062 -11.31498 -11.01208 -10.99614 -10.88817 -10.87194 -10.54062 -10.48744 -10.16768 -9.89738 -9.84997 -9.26962 -9.19307 -8.45680 -6.09598 -4.13600 1.60949 2.62146 3.28012 3.28831 3.34314 3.36515 3.39370 4.00629 4.32225 4.43093 4.72546 4.84355 4.91936 5.12005 5.13623 5.26866 5.35176 5.41735 5.46981 5.50749 5.71351 5.72658 5.76917 5.81427 5.83069 5.90115 6.03809 6.17238 6.22287 6.30622 6.35079 6.55486 6.66606 6.81232 6.91146 7.46998 7.55035 7.85759 8.21855 8.58969 8.90737 9.50912 11.01716 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.038622 B = 0.003679 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.795803 B = 7608.566135 C = 7735.229568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.076 3.924 4 C 0.036 3.964 5 C -0.132 4.132 6 C -0.134 4.134 7 C 0.173 3.827 8 N -0.400 5.400 9 O 0.075 5.925 10 C 0.221 3.779 11 C -0.001 4.001 12 H 0.106 0.894 13 C -0.135 4.135 14 C 0.029 3.971 15 C -0.521 4.521 16 H 0.062 0.938 17 C 0.060 3.940 18 N -0.891 5.891 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.272 1.272 23 N -0.494 5.494 24 H 0.041 0.959 25 H 0.086 0.914 26 H 0.041 0.959 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.040 0.960 37 H 0.057 0.943 38 H 0.022 0.978 39 H 0.029 0.971 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.765 -12.560 -7.814 17.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.304 6.304 3 C -0.001 4.001 4 C 0.034 3.966 5 C -0.190 4.190 6 C -0.192 4.192 7 C -0.100 4.100 8 N -0.111 5.111 9 O 0.019 5.981 10 C 0.001 3.999 11 C -0.022 4.022 12 H 0.124 0.876 13 C -0.193 4.193 14 C -0.009 4.009 15 C -0.559 4.559 16 H 0.081 0.919 17 C -0.142 4.142 18 N -0.530 5.530 19 Si 0.723 3.277 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 N -0.227 5.227 24 H 0.059 0.941 25 H 0.105 0.895 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.040 0.960 39 H 0.047 0.953 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.407 -12.985 -7.649 18.314 hybrid contribution 0.648 1.017 0.268 1.235 sum -9.759 -11.968 -7.381 17.116 Atomic orbital electron populations 1.22734 0.80875 1.02648 1.00143 1.87804 1.19673 1.27442 1.95486 1.22382 0.91888 0.84497 1.01306 1.18734 0.92454 0.86273 0.99158 1.21770 1.02267 1.00185 0.94771 1.21784 1.02347 1.00157 0.94879 1.25410 0.87218 0.96175 1.01239 1.74545 1.17467 0.96506 1.22548 1.85269 1.15299 1.31779 1.65766 1.29622 0.89523 0.89215 0.91498 1.20357 0.85641 0.95437 1.00754 0.87599 1.21781 1.04172 0.99040 0.94295 1.19239 0.98681 0.93639 0.89330 1.21056 1.00897 1.25154 1.08825 0.91941 1.25006 0.96957 0.96772 0.95505 1.69968 1.34360 1.36674 1.11966 0.86540 0.83741 0.80137 0.77295 1.20560 1.21231 1.19718 1.71847 1.16882 1.11642 1.22321 0.94081 0.89531 0.94013 0.92528 0.92658 0.91314 0.90631 0.92858 0.92655 0.90634 0.91250 0.89652 0.94085 0.92341 0.96000 0.95296 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.43 9.35 -35.23 -0.33 -4.76 16 3 C 0.08 0.97 4.31 37.16 0.16 1.13 16 4 C 0.04 0.50 0.82 -155.66 -0.13 0.37 16 5 C -0.13 -1.61 8.31 37.16 0.31 -1.30 16 6 C -0.13 -1.74 8.31 37.16 0.31 -1.43 16 7 C 0.17 3.00 6.40 -156.37 -1.00 2.00 16 8 N -0.40 -7.43 11.47 30.90 0.35 -7.08 16 9 O 0.07 1.46 11.31 18.10 0.20 1.67 16 10 C 0.22 4.27 7.02 -13.06 -0.09 4.18 16 11 C 0.00 -0.03 2.81 -91.77 -0.26 -0.29 16 12 H 0.11 2.02 8.14 -51.93 -0.42 1.60 16 13 C -0.13 -2.30 8.99 37.16 0.33 -1.96 16 14 C 0.03 0.70 4.43 -27.88 -0.12 0.58 16 15 C -0.52 -13.59 8.41 -34.44 -0.29 -13.88 16 16 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 19 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 N -0.49 -9.29 11.55 -9.87 -0.11 -9.41 16 24 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.82 7.68 -51.93 -0.40 0.42 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.86 7.68 -51.93 -0.40 0.46 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 1.47 6.95 -51.93 -0.36 1.11 16 36 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 335.77 15.07 5.06 5.06 Total: -1.00 -29.22 335.77 -5.46 -34.68 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -6.58 Total: -3.05 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 0.23 Total: -7.68 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.98 Total: -41.57 kcal Atomic # 8 Polarization: -2.97 SS G_CDS: -0.12 Total: -3.09 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.22 -5.46 -34.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395494490.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.340 kcal (2) G-P(sol) polarization free energy of solvation -29.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds