Wall clock time and date at job start Mon Mar 30 2020 07:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 113.99738 * 2 1 4 4 C 1.52998 * 109.46797 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47510 * 59.99737 * 4 3 2 6 6 C 1.53006 * 109.47182 * 299.99564 * 4 3 2 7 7 C 1.50699 * 109.46945 * 180.02562 * 4 3 2 8 8 N 1.29941 * 126.28711 * 0.02562 * 7 4 3 9 9 O 1.21310 * 110.25200 * 179.68965 * 8 7 4 10 10 C 1.33644 * 109.80606 * 0.47027 * 9 8 7 11 11 C 1.50695 * 126.54863 * 179.80245 * 10 9 8 12 12 H 1.09000 * 109.47521 * 179.68886 * 11 10 9 13 13 C 1.53008 * 109.47004 * 299.68875 * 11 10 9 14 14 C 1.52996 * 109.47310 * 59.68656 * 11 10 9 15 15 C 1.50702 * 109.47159 * 174.99934 * 14 11 10 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 11 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 11 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 N 1.31129 * 106.90211 * 359.53980 * 10 9 8 24 24 H 1.08996 * 109.47532 * 60.00246 * 1 2 3 25 25 H 1.09007 * 109.47116 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47169 * 299.99662 * 1 2 3 27 27 H 1.08995 * 109.47175 * 60.00075 * 3 2 1 28 28 H 1.09002 * 109.46793 * 299.99798 * 3 2 1 29 29 H 1.09001 * 109.46990 * 179.97438 * 5 4 3 30 30 H 1.09002 * 109.47029 * 300.00347 * 5 4 3 31 31 H 1.09000 * 109.46997 * 60.00208 * 5 4 3 32 32 H 1.08995 * 109.47293 * 300.00466 * 6 4 3 33 33 H 1.09002 * 109.46713 * 60.00047 * 6 4 3 34 34 H 1.08995 * 109.47364 * 180.02562 * 6 4 3 35 35 H 1.09004 * 109.46896 * 180.02562 * 13 11 10 36 36 H 1.09001 * 109.46930 * 299.99977 * 13 11 10 37 37 H 1.08999 * 109.46998 * 60.00229 * 13 11 10 38 38 H 1.09004 * 109.47066 * 55.00137 * 14 11 10 39 39 H 1.08994 * 109.47405 * 294.99967 * 14 11 10 40 40 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9864 0.4256 -1.2501 6 6 3.9874 0.4253 1.2484 7 6 4.1483 2.5614 0.0000 8 7 3.5042 3.6900 0.0014 9 8 4.2845 4.6188 0.0077 10 6 5.5385 4.1567 0.0007 11 6 6.7991 4.9824 0.0008 12 1 7.6662 4.3219 -0.0004 13 6 6.8298 5.8665 -1.2477 14 6 6.8313 5.8640 1.2508 15 6 8.1460 6.5979 1.3142 16 1 8.8846 6.4507 0.5402 17 6 8.4035 7.4622 2.3573 18 7 7.5039 7.6418 3.2997 19 14 10.0300 8.3777 2.4318 20 1 9.9020 9.6732 1.7172 21 1 10.3924 8.6284 3.8499 22 1 11.0886 7.5596 1.7875 23 7 5.4625 2.8477 -0.0005 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6885 1.8464 0.8899 28 1 1.6885 1.8464 -0.8900 29 1 5.0730 0.3400 -1.2507 30 1 3.5430 -0.5702 -1.2501 31 1 3.6645 0.9667 -2.1399 32 1 3.6661 0.9660 2.1385 33 1 3.5440 -0.5705 1.2484 34 1 5.0739 0.3396 1.2482 35 1 7.7419 6.4634 -1.2478 36 1 6.8069 5.2384 -2.1382 37 1 5.9628 6.5271 -1.2465 38 1 6.7200 5.2406 2.1380 39 1 6.0147 6.5846 1.2084 40 1 7.6852 8.2496 4.0337 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395494490.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:33 Heat of formation + Delta-G solvation = -22.918431 kcal Electronic energy + Delta-G solvation = -20726.108417 eV Core-core repulsion = 17542.985009 eV Total energy + Delta-G solvation = -3183.123408 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -46.61281 -39.79106 -37.62506 -37.43385 -35.35620 -34.29727 -32.22465 -29.02174 -28.49296 -28.33538 -26.83739 -26.16829 -25.17428 -24.36171 -22.27876 -20.20357 -19.08846 -18.63379 -18.23660 -17.30221 -16.88315 -16.68345 -16.48877 -15.93506 -15.43047 -14.99943 -14.77159 -14.42384 -14.36398 -13.83713 -13.60457 -13.44441 -13.05827 -12.86357 -12.82604 -12.78217 -12.67349 -12.62044 -12.34448 -12.26284 -12.24332 -12.14931 -11.91172 -11.69939 -11.55790 -11.25208 -10.80226 -10.72322 -10.54422 -8.17675 -6.28280 0.10085 1.17681 1.47241 1.47767 1.58590 1.84859 2.20871 2.45409 2.83238 3.06429 3.17956 3.68517 3.75956 3.80603 4.09566 4.20760 4.28475 4.32772 4.39796 4.48998 4.54873 4.56258 4.71991 4.73268 4.78367 4.82834 4.83410 4.84337 5.00983 5.04581 5.08496 5.20389 5.24529 5.36761 5.41298 5.58625 5.80189 6.06554 6.16660 6.85903 7.09653 7.41101 8.94907 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.038622 B = 0.003679 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.795803 B = 7608.566135 C = 7735.229568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.392 6.392 3 C 0.085 3.915 4 C 0.029 3.971 5 C -0.125 4.125 6 C -0.129 4.129 7 C 0.180 3.820 8 N -0.410 5.410 9 O 0.057 5.943 10 C 0.214 3.786 11 C 0.009 3.991 12 H 0.114 0.886 13 C -0.128 4.128 14 C 0.037 3.963 15 C -0.528 4.528 16 H 0.079 0.921 17 C 0.001 3.999 18 N -0.936 5.936 19 Si 0.966 3.034 20 H -0.272 1.272 21 H -0.290 1.290 22 H -0.258 1.258 23 N -0.499 5.499 24 H 0.048 0.952 25 H 0.108 0.892 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.054 0.946 38 H -0.013 1.013 39 H 0.004 0.996 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.317 -13.659 -9.185 18.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.311 6.311 3 C 0.008 3.992 4 C 0.028 3.972 5 C -0.183 4.183 6 C -0.187 4.187 7 C -0.094 4.094 8 N -0.123 5.123 9 O 0.005 5.995 10 C -0.005 4.005 11 C -0.012 4.012 12 H 0.132 0.868 13 C -0.186 4.186 14 C -0.001 4.001 15 C -0.566 4.566 16 H 0.097 0.903 17 C -0.197 4.197 18 N -0.576 5.576 19 Si 0.790 3.210 20 H -0.198 1.198 21 H -0.216 1.216 22 H -0.182 1.182 23 N -0.233 5.233 24 H 0.067 0.933 25 H 0.126 0.874 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.114 0.886 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.005 0.995 39 H 0.022 0.978 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.956 -14.075 -9.042 19.467 hybrid contribution 0.410 1.269 0.710 1.510 sum -9.546 -12.806 -8.332 18.015 Atomic orbital electron populations 1.22971 0.79173 1.04291 1.00671 1.87779 1.21465 1.26340 1.95529 1.22184 0.91098 0.85199 1.00755 1.19008 0.93264 0.84537 1.00439 1.21735 1.02051 1.00800 0.93688 1.21760 1.02003 1.00933 0.93967 1.26079 0.86700 0.97263 0.99351 1.74546 1.17454 0.96773 1.23505 1.85256 1.15457 1.32451 1.66320 1.29561 0.89493 0.89546 0.91938 1.20154 0.86172 0.95198 0.99641 0.86833 1.21737 1.03991 0.98930 0.93968 1.19028 0.97449 0.93233 0.90393 1.21507 1.01577 1.24590 1.08881 0.90280 1.25959 1.00618 0.97933 0.95225 1.70119 1.36719 1.37843 1.12890 0.85429 0.79447 0.79013 0.77072 1.19752 1.21618 1.18168 1.71855 1.17772 1.11261 1.22393 0.93348 0.87359 0.93726 0.93546 0.92816 0.91736 0.88775 0.92861 0.93719 0.88564 0.91888 0.89660 0.91244 0.92663 0.99481 0.97757 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 11.01 113.37 1.25 1.61 16 2 O -0.39 -8.20 9.35 -148.98 -1.39 -9.59 16 3 C 0.09 2.07 4.31 71.98 0.31 2.38 16 4 C 0.03 0.78 0.82 -52.93 -0.04 0.74 16 5 C -0.12 -2.81 8.31 71.98 0.60 -2.21 16 6 C -0.13 -3.20 8.31 71.98 0.60 -2.60 16 7 C 0.18 6.15 6.40 138.46 0.89 7.03 16 8 N -0.41 -15.27 11.47 -60.30 -0.69 -15.96 16 9 O 0.06 2.28 11.31 74.82 0.85 3.13 16 10 C 0.21 8.32 7.02 88.38 0.62 8.95 16 11 C 0.01 0.34 2.81 -11.54 -0.03 0.31 16 12 H 0.11 4.24 8.14 -2.39 -0.02 4.22 16 13 C -0.13 -4.20 8.99 71.98 0.65 -3.56 16 14 C 0.04 1.85 4.43 29.85 0.13 1.98 16 15 C -0.53 -27.53 8.41 25.60 0.22 -27.31 16 16 H 0.08 3.78 7.06 -2.91 -0.02 3.76 16 17 C 0.00 0.03 5.46 84.66 0.46 0.49 16 18 N -0.94 -55.50 13.29 21.45 0.28 -55.21 16 19 Si 0.97 42.17 29.54 68.60 2.03 44.20 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 21 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 22 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 23 N -0.50 -18.60 11.55 -303.18 -3.50 -22.11 16 24 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.09 1.78 7.68 -2.39 -0.02 1.76 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.04 1.18 8.14 -2.39 -0.02 1.17 16 33 H 0.10 1.98 7.68 -2.39 -0.02 1.97 16 34 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.08 2.79 6.95 -2.38 -0.02 2.78 16 36 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 38 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 39 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.26 14.74 8.31 -92.70 -0.77 13.97 16 Total: -1.00 -62.82 335.77 4.22 -58.60 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 1.00 Total: 9.14 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: 5.64 Total: -12.20 kcal Atomic # 7 Polarization: -89.37 SS G_CDS: -3.91 Total: -93.28 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.55 Total: -6.46 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -62.82 4.22 -58.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395494490.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.682 kcal (2) G-P(sol) polarization free energy of solvation -62.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds