Wall clock time and date at job start Mon Mar 30 2020 07:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.46784 * 2 1 4 4 C 1.42900 * 114.00064 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47146 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47352 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47352 * 179.97438 * 6 5 4 8 8 N 1.29954 * 126.28654 * 89.97980 * 7 6 5 9 9 O 1.21293 * 110.25286 * 180.02562 * 8 7 6 10 10 C 1.33642 * 109.81058 * 359.97438 * 9 8 7 11 11 C 1.50698 * 126.55339 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47431 * 269.97717 * 11 10 9 13 13 H 1.09005 * 109.46510 * 305.00000 * 12 11 10 14 14 C 1.53000 * 109.47280 * 64.99429 * 12 11 10 15 15 C 1.50692 * 109.47480 * 184.99797 * 12 11 10 16 16 H 1.08008 * 120.00221 * 359.97438 * 15 12 11 17 17 C 1.37880 * 120.00332 * 179.97438 * 15 12 11 18 18 N 1.31514 * 119.99480 * 359.97438 * 17 15 12 19 19 Si 1.86795 * 120.00373 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.47145 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47570 * 119.99680 * 19 17 15 22 22 H 1.48501 * 109.47180 * 240.00241 * 19 17 15 23 23 N 1.31130 * 106.90015 * 0.02562 * 10 9 8 24 24 H 1.09006 * 109.46707 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47213 * 299.99381 * 1 2 3 26 26 H 1.09000 * 109.47457 * 60.00092 * 1 2 3 27 27 H 1.08994 * 109.47213 * 240.00619 * 2 1 3 28 28 H 1.09000 * 109.47457 * 119.99908 * 2 1 3 29 29 H 1.08991 * 109.47013 * 60.00121 * 4 3 2 30 30 H 1.08996 * 109.47174 * 299.99858 * 4 3 2 31 31 H 1.09005 * 109.47212 * 59.99854 * 5 4 3 32 32 H 1.09009 * 109.47133 * 300.00258 * 5 4 3 33 33 H 1.09005 * 109.46952 * 59.99853 * 6 5 4 34 34 H 1.08996 * 109.47200 * 299.99935 * 6 5 4 35 35 H 1.09000 * 109.46935 * 29.97313 * 11 10 9 36 36 H 1.08997 * 109.47416 * 149.97136 * 11 10 9 37 37 H 1.08994 * 109.46815 * 60.00339 * 14 12 11 38 38 H 1.08999 * 109.47166 * 180.02562 * 14 12 11 39 39 H 1.08999 * 109.47100 * 300.00345 * 14 12 11 40 40 H 0.97002 * 119.99674 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4603 -0.0006 5 6 3.8252 2.9385 0.0001 6 6 5.3504 3.0595 0.0001 7 6 5.7389 4.5156 0.0002 8 7 5.9368 5.2587 1.0477 9 8 6.2369 6.3852 0.7128 10 6 6.2602 6.4701 -0.6208 11 6 6.5872 7.6943 -1.4365 12 6 5.3041 8.4801 -1.7138 13 1 4.5721 7.8253 -2.1869 14 6 4.7365 9.0115 -0.3961 15 6 5.6110 9.6358 -2.6309 16 1 6.6205 9.7944 -2.9807 17 6 4.6032 10.4910 -3.0235 18 7 3.3739 10.2976 -2.5980 19 14 4.9835 11.9231 -4.1609 20 1 6.4307 11.9201 -4.4937 21 1 4.1882 11.7898 -5.4078 22 1 4.6342 13.1984 -3.4848 23 7 5.9442 5.2847 -1.0838 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8332 0.9769 -0.8908 30 1 3.8340 0.9767 0.8891 31 1 3.4228 3.4216 0.8906 32 1 3.4220 3.4226 -0.8894 33 1 5.7532 2.5764 -0.8901 34 1 5.7532 2.5756 0.8898 35 1 7.2860 8.3228 -0.8844 36 1 7.0392 7.3915 -2.3810 37 1 5.4684 9.6662 0.0769 38 1 3.8222 9.5710 -0.5936 39 1 4.5145 8.1756 0.2672 40 1 2.6649 10.8995 -2.8739 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395496780.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:22 Heat of formation + Delta-G solvation = -9.563868 kcal Electronic energy + Delta-G solvation = -19917.865155 eV Core-core repulsion = 16735.320844 eV Total energy + Delta-G solvation = -3182.544311 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.08261 -38.37010 -36.08420 -35.59211 -33.83507 -32.40768 -31.23131 -30.44504 -26.91834 -26.60691 -25.21990 -23.25531 -23.02296 -22.16048 -20.95209 -19.62230 -17.64981 -17.13898 -16.67561 -16.52936 -16.25494 -15.01549 -14.84623 -14.62388 -14.08161 -13.70828 -13.27634 -13.12435 -13.08246 -12.79355 -12.41245 -12.01630 -11.80761 -11.70370 -11.63435 -11.25208 -11.14389 -11.08409 -10.95885 -10.92462 -10.66924 -10.50591 -10.21605 -9.96324 -9.89861 -9.80533 -9.11684 -8.94920 -8.41059 -6.05428 -4.13838 1.64482 2.63437 3.27830 3.35176 3.37484 3.39841 3.45672 4.03231 4.37211 4.42504 4.76164 4.82733 4.85992 5.01339 5.07297 5.11495 5.23419 5.26227 5.29633 5.41486 5.48959 5.63729 5.68882 5.85958 5.94622 6.05343 6.09928 6.18717 6.22430 6.45832 6.55505 6.83908 7.01054 7.04397 7.21348 7.63724 7.84521 8.04156 8.29413 8.64133 8.88946 9.51800 11.00856 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.020541 B = 0.003440 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.793628 B = 8137.135978 C = 9074.219841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.388 6.388 4 C 0.067 3.933 5 C -0.115 4.115 6 C -0.019 4.019 7 C 0.163 3.837 8 N -0.399 5.399 9 O 0.069 5.931 10 C 0.219 3.781 11 C -0.027 4.027 12 C 0.050 3.950 13 H 0.035 0.965 14 C -0.141 4.141 15 C -0.517 4.517 16 H 0.061 0.939 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.896 3.104 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 N -0.496 5.496 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.032 0.968 38 H 0.086 0.914 39 H 0.004 0.996 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.748 -17.293 5.207 18.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.308 6.308 4 C -0.009 4.009 5 C -0.154 4.154 6 C -0.058 4.058 7 C -0.110 4.110 8 N -0.110 5.110 9 O 0.013 5.987 10 C 0.000 4.000 11 C -0.067 4.067 12 C 0.030 3.970 13 H 0.053 0.947 14 C -0.199 4.199 15 C -0.555 4.555 16 H 0.079 0.921 17 C -0.139 4.139 18 N -0.525 5.525 19 Si 0.724 3.276 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 N -0.230 5.230 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.051 0.949 38 H 0.105 0.895 39 H 0.023 0.977 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.299 -17.659 5.699 18.559 hybrid contribution 0.267 0.706 -0.606 0.968 sum 0.565 -16.953 5.093 17.710 Atomic orbital electron populations 1.21751 0.93745 1.02132 1.03354 1.22452 0.95681 0.83859 0.99939 1.87915 1.21128 1.26337 1.95415 1.22427 0.81327 0.96958 1.00236 1.21452 0.93829 0.95481 1.04640 1.19703 0.95908 0.85840 1.04331 1.25580 1.01256 0.99792 0.84332 1.74532 1.20357 0.91843 1.24275 1.85281 1.63059 1.24727 1.25639 1.29545 0.92242 0.96838 0.81400 1.20851 1.03002 0.86706 0.96092 1.18743 0.89443 0.94254 0.94516 0.94699 1.21888 1.03254 0.98671 0.96089 1.21057 0.95105 1.10879 1.28438 0.92060 1.24959 0.94979 0.97820 0.96152 1.69907 1.00298 1.37888 1.44368 0.86478 0.78492 0.82157 0.80516 1.19656 1.21006 1.21007 1.71919 1.20645 1.01512 1.28928 0.91179 0.91807 0.91705 0.93415 0.93520 0.92977 0.93217 0.90667 0.90043 0.88695 0.89340 0.89222 0.88225 0.94904 0.89523 0.97708 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 37.16 0.38 -0.81 16 2 C 0.06 0.51 6.66 37.16 0.25 0.75 16 3 O -0.39 -4.73 10.34 -35.23 -0.36 -5.09 16 4 C 0.07 0.69 5.94 37.16 0.22 0.91 16 5 C -0.12 -1.45 5.57 -26.73 -0.15 -1.60 16 6 C -0.02 -0.23 5.84 -27.89 -0.16 -0.40 16 7 C 0.16 2.82 7.47 -156.37 -1.17 1.65 16 8 N -0.40 -7.40 12.16 30.90 0.38 -7.03 16 9 O 0.07 1.33 10.75 18.11 0.19 1.52 16 10 C 0.22 4.25 6.92 -13.06 -0.09 4.16 16 11 C -0.03 -0.53 5.26 -27.88 -0.15 -0.68 16 12 C 0.05 1.20 2.29 -91.77 -0.21 0.99 16 13 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 14 C -0.14 -3.37 8.78 37.16 0.33 -3.04 16 15 C -0.52 -13.43 8.56 -34.44 -0.29 -13.72 16 16 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 17 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 18 N -0.89 -24.93 11.32 55.43 0.63 -24.30 16 19 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 N -0.50 -9.60 11.55 -9.87 -0.11 -9.71 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.08 1.18 8.14 -51.92 -0.42 0.75 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 39 H 0.00 0.09 6.93 -51.93 -0.36 -0.27 16 40 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 337.04 15.07 5.08 5.08 Total: -1.00 -29.72 337.04 -6.92 -36.64 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -6.56 Total: -2.51 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -1.14 Total: -10.19 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.89 Total: -41.04 kcal Atomic # 8 Polarization: -3.40 SS G_CDS: -0.17 Total: -3.57 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.72 -6.92 -36.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395496780.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.079 kcal (2) G-P(sol) polarization free energy of solvation -29.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds