Wall clock time and date at job start Mon Mar 30 2020 07:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.46784 * 2 1 4 4 C 1.42900 * 114.00064 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47146 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47352 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47352 * 179.97438 * 6 5 4 8 8 N 1.29954 * 126.28654 * 89.97980 * 7 6 5 9 9 O 1.21293 * 110.25286 * 180.02562 * 8 7 6 10 10 C 1.33642 * 109.81058 * 359.97438 * 9 8 7 11 11 C 1.50698 * 126.55339 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47431 * 269.97717 * 11 10 9 13 13 H 1.09005 * 109.46510 * 305.00000 * 12 11 10 14 14 C 1.53000 * 109.47280 * 64.99429 * 12 11 10 15 15 C 1.50692 * 109.47480 * 184.99797 * 12 11 10 16 16 H 1.08008 * 120.00221 * 359.97438 * 15 12 11 17 17 C 1.37880 * 120.00332 * 179.97438 * 15 12 11 18 18 N 1.31514 * 119.99480 * 359.97438 * 17 15 12 19 19 Si 1.86795 * 120.00373 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.47145 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47570 * 119.99680 * 19 17 15 22 22 H 1.48501 * 109.47180 * 240.00241 * 19 17 15 23 23 N 1.31130 * 106.90015 * 0.02562 * 10 9 8 24 24 H 1.09006 * 109.46707 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47213 * 299.99381 * 1 2 3 26 26 H 1.09000 * 109.47457 * 60.00092 * 1 2 3 27 27 H 1.08994 * 109.47213 * 240.00619 * 2 1 3 28 28 H 1.09000 * 109.47457 * 119.99908 * 2 1 3 29 29 H 1.08991 * 109.47013 * 60.00121 * 4 3 2 30 30 H 1.08996 * 109.47174 * 299.99858 * 4 3 2 31 31 H 1.09005 * 109.47212 * 59.99854 * 5 4 3 32 32 H 1.09009 * 109.47133 * 300.00258 * 5 4 3 33 33 H 1.09005 * 109.46952 * 59.99853 * 6 5 4 34 34 H 1.08996 * 109.47200 * 299.99935 * 6 5 4 35 35 H 1.09000 * 109.46935 * 29.97313 * 11 10 9 36 36 H 1.08997 * 109.47416 * 149.97136 * 11 10 9 37 37 H 1.08994 * 109.46815 * 60.00339 * 14 12 11 38 38 H 1.08999 * 109.47166 * 180.02562 * 14 12 11 39 39 H 1.08999 * 109.47100 * 300.00345 * 14 12 11 40 40 H 0.97002 * 119.99674 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4603 -0.0006 5 6 3.8252 2.9385 0.0001 6 6 5.3504 3.0595 0.0001 7 6 5.7389 4.5156 0.0002 8 7 5.9368 5.2587 1.0477 9 8 6.2369 6.3852 0.7128 10 6 6.2602 6.4701 -0.6208 11 6 6.5872 7.6943 -1.4365 12 6 5.3041 8.4801 -1.7138 13 1 4.5721 7.8253 -2.1869 14 6 4.7365 9.0115 -0.3961 15 6 5.6110 9.6358 -2.6309 16 1 6.6205 9.7944 -2.9807 17 6 4.6032 10.4910 -3.0235 18 7 3.3739 10.2976 -2.5980 19 14 4.9835 11.9231 -4.1609 20 1 6.4307 11.9201 -4.4937 21 1 4.1882 11.7898 -5.4078 22 1 4.6342 13.1984 -3.4848 23 7 5.9442 5.2847 -1.0838 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8332 0.9769 -0.8908 30 1 3.8340 0.9767 0.8891 31 1 3.4228 3.4216 0.8906 32 1 3.4220 3.4226 -0.8894 33 1 5.7532 2.5764 -0.8901 34 1 5.7532 2.5756 0.8898 35 1 7.2860 8.3228 -0.8844 36 1 7.0392 7.3915 -2.3810 37 1 5.4684 9.6662 0.0769 38 1 3.8222 9.5710 -0.5936 39 1 4.5145 8.1756 0.2672 40 1 2.6649 10.8995 -2.8739 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395496780.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:22 Heat of formation + Delta-G solvation = -28.155462 kcal Electronic energy + Delta-G solvation = -19918.671347 eV Core-core repulsion = 16735.320844 eV Total energy + Delta-G solvation = -3183.350503 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -46.53274 -39.18642 -37.51265 -37.22470 -35.15169 -33.97768 -32.46437 -31.69578 -28.32843 -27.93329 -27.23574 -24.67056 -23.69551 -23.36670 -22.31759 -21.31145 -19.15455 -18.49349 -18.18043 -17.59426 -17.32961 -16.56974 -16.07560 -15.81066 -15.38794 -15.19777 -14.69830 -14.60026 -14.02195 -13.93657 -13.50796 -13.49169 -13.18282 -13.06722 -12.84792 -12.60044 -12.53360 -12.48512 -12.37329 -12.14672 -12.05685 -11.94015 -11.82413 -11.71607 -11.66129 -10.92864 -10.70950 -10.55657 -10.45599 -8.08853 -6.23789 0.16163 1.22147 1.46643 1.48946 1.60011 1.90912 2.46567 2.53714 2.87676 3.10755 3.21285 3.84436 3.94631 4.09786 4.16387 4.19201 4.34601 4.38488 4.44841 4.48212 4.49373 4.51641 4.59090 4.76135 4.84880 4.87500 4.92716 5.00966 5.04967 5.06744 5.10116 5.10440 5.25879 5.31332 5.61009 5.84618 6.04654 6.28243 6.28336 6.87640 7.17645 7.45812 8.97321 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.020541 B = 0.003440 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.793628 B = 8137.135978 C = 9074.219841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.050 3.950 3 O -0.422 6.422 4 C 0.070 3.930 5 C -0.110 4.110 6 C -0.016 4.016 7 C 0.167 3.833 8 N -0.411 5.411 9 O 0.059 5.941 10 C 0.213 3.787 11 C -0.017 4.017 12 C 0.050 3.950 13 H -0.005 1.005 14 C -0.130 4.130 15 C -0.527 4.527 16 H 0.073 0.927 17 C 0.010 3.990 18 N -0.922 5.922 19 Si 0.961 3.039 20 H -0.258 1.258 21 H -0.286 1.286 22 H -0.283 1.283 23 N -0.513 5.513 24 H 0.093 0.907 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.044 0.956 38 H 0.056 0.944 39 H 0.009 0.991 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.109 -18.512 5.157 19.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.026 4.026 3 O -0.342 6.342 4 C -0.006 4.006 5 C -0.149 4.149 6 C -0.055 4.055 7 C -0.106 4.106 8 N -0.124 5.124 9 O 0.006 5.994 10 C -0.006 4.006 11 C -0.056 4.056 12 C 0.030 3.970 13 H 0.013 0.987 14 C -0.188 4.188 15 C -0.565 4.565 16 H 0.091 0.909 17 C -0.189 4.189 18 N -0.561 5.561 19 Si 0.786 3.214 20 H -0.182 1.182 21 H -0.212 1.212 22 H -0.209 1.209 23 N -0.248 5.248 24 H 0.112 0.888 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.028 0.972 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.681 -18.873 5.656 19.774 hybrid contribution -0.207 1.007 -0.567 1.174 sum 1.475 -17.866 5.089 18.635 Atomic orbital electron populations 1.21795 0.93445 1.03414 1.02390 1.22676 0.96052 0.82605 1.01257 1.87874 1.22106 1.28531 1.95698 1.22435 0.80892 0.95127 1.02148 1.21353 0.93867 0.97203 1.02430 1.19961 0.95674 0.83131 1.06715 1.26405 0.99556 1.01358 0.83288 1.74524 1.21262 0.91819 1.24788 1.85260 1.63411 1.25264 1.25445 1.29471 0.92543 0.96989 0.81636 1.20646 1.01000 0.86703 0.97201 1.18604 0.90688 0.93757 0.93935 0.98657 1.21726 1.02149 0.98604 0.96320 1.21470 0.95555 1.11093 1.28346 0.90888 1.25802 0.94840 1.00532 0.97723 1.70060 1.01266 1.38990 1.45780 0.85456 0.78844 0.78802 0.78248 1.18191 1.21236 1.20945 1.71937 1.20908 1.01940 1.29979 0.88782 0.92624 0.92809 0.92188 0.91982 0.91231 0.90978 0.92452 0.92710 0.86609 0.86585 0.86860 0.87114 0.93651 0.92531 0.97200 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 10.28 71.98 0.74 -1.50 16 2 C 0.05 0.80 6.66 71.98 0.48 1.28 16 3 O -0.42 -9.87 10.34 -148.98 -1.54 -11.41 16 4 C 0.07 1.32 5.94 71.98 0.43 1.74 16 5 C -0.11 -2.69 5.57 30.59 0.17 -2.52 16 6 C -0.02 -0.37 5.84 29.85 0.17 -0.20 16 7 C 0.17 5.59 7.47 138.46 1.03 6.63 16 8 N -0.41 -14.93 12.16 -60.32 -0.73 -15.66 16 9 O 0.06 2.25 10.75 74.85 0.80 3.06 16 10 C 0.21 8.16 6.92 88.38 0.61 8.77 16 11 C -0.02 -0.63 5.26 29.85 0.16 -0.48 16 12 C 0.05 2.41 2.29 -11.54 -0.03 2.39 16 13 H 0.00 -0.27 8.14 -2.38 -0.02 -0.28 16 14 C -0.13 -6.28 8.78 71.98 0.63 -5.65 16 15 C -0.53 -27.17 8.56 25.60 0.22 -26.95 16 16 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 17 C 0.01 0.51 5.30 84.66 0.45 0.96 16 18 N -0.92 -52.92 11.32 21.45 0.24 -52.68 16 19 Si 0.96 42.09 29.54 68.60 2.03 44.12 16 20 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 21 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 23 N -0.51 -19.58 11.55 -303.19 -3.50 -23.08 16 24 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 25 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.12 2.19 8.14 -2.38 -0.02 2.18 16 34 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 36 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 37 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 39 H 0.01 0.42 6.93 -2.39 -0.02 0.40 16 40 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -64.55 337.04 3.37 -61.18 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 1.01 Total: 10.00 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: 5.07 Total: -15.52 kcal Atomic # 7 Polarization: -87.43 SS G_CDS: -3.99 Total: -91.42 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.74 Total: -8.35 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -64.55 3.37 -61.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395496780.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.025 kcal (2) G-P(sol) polarization free energy of solvation -64.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds