Wall clock time and date at job start Mon Mar 30 2020 07:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42899 * 109.47149 * 2 1 4 4 C 1.42905 * 113.99868 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46903 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.46799 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47042 * 179.97438 * 6 5 4 8 8 N 1.29954 * 126.28649 * 90.02411 * 7 6 5 9 9 O 1.21294 * 110.24985 * 179.73386 * 8 7 6 10 10 C 1.33643 * 109.81343 * 359.97438 * 9 8 7 11 11 C 1.50698 * 126.55336 * 180.02562 * 10 9 8 12 12 C 1.53008 * 109.46860 * 269.97182 * 11 10 9 13 13 H 1.09001 * 109.47134 * 55.00045 * 12 11 10 14 14 C 1.52995 * 109.47233 * 295.00109 * 12 11 10 15 15 C 1.50697 * 109.46856 * 174.99816 * 12 11 10 16 16 H 1.08002 * 120.00263 * 0.02562 * 15 12 11 17 17 C 1.37883 * 119.99928 * 179.97438 * 15 12 11 18 18 N 1.31515 * 119.99815 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 120.00033 * 179.97438 * 17 15 12 20 20 H 1.48496 * 109.46816 * 90.00223 * 19 17 15 21 21 H 1.48497 * 109.47147 * 210.00141 * 19 17 15 22 22 H 1.48498 * 109.47030 * 330.00317 * 19 17 15 23 23 N 1.31132 * 106.89433 * 359.97438 * 10 9 8 24 24 H 1.08991 * 109.47074 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46632 * 299.99710 * 1 2 3 26 26 H 1.08995 * 109.46975 * 59.99461 * 1 2 3 27 27 H 1.09003 * 109.46632 * 240.00290 * 2 1 3 28 28 H 1.08995 * 109.46975 * 120.00539 * 2 1 3 29 29 H 1.08999 * 109.47180 * 59.99907 * 4 3 2 30 30 H 1.09002 * 109.46757 * 300.00188 * 4 3 2 31 31 H 1.08999 * 109.47524 * 59.99817 * 5 4 3 32 32 H 1.08999 * 109.46597 * 299.99471 * 5 4 3 33 33 H 1.08999 * 109.47388 * 59.99543 * 6 5 4 34 34 H 1.09011 * 109.47111 * 299.99426 * 6 5 4 35 35 H 1.08994 * 109.47064 * 29.97104 * 11 10 9 36 36 H 1.09000 * 109.47579 * 149.97736 * 11 10 9 37 37 H 1.08994 * 109.47492 * 59.99626 * 14 12 11 38 38 H 1.08998 * 109.46891 * 180.02562 * 14 12 11 39 39 H 1.09001 * 109.47008 * 300.00012 * 14 12 11 40 40 H 0.96999 * 119.99887 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 -0.0006 5 6 3.8255 2.9383 0.0001 6 6 5.3507 3.0591 -0.0012 7 6 5.7393 4.5151 -0.0011 8 7 5.9390 5.2578 1.0464 9 8 6.2443 6.3829 0.7114 10 6 6.2697 6.4672 -0.6221 11 6 6.6029 7.6897 -1.4379 12 6 5.3232 8.4807 -1.7172 13 1 4.8246 8.7094 -0.7753 14 6 4.3908 7.6476 -2.5988 15 6 5.6709 9.7643 -2.4261 16 1 6.7013 9.9929 -2.6549 17 6 4.6733 10.6465 -2.7834 18 7 3.4184 10.3679 -2.5052 19 14 5.1042 12.2380 -3.6615 20 1 5.0891 12.0132 -5.1293 21 1 4.1085 13.2823 -3.3104 22 1 6.4575 12.6835 -3.2428 23 7 5.9504 5.2826 -1.0851 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.8334 0.9766 -0.8908 30 1 3.8341 0.9763 0.8892 31 1 3.4231 3.4214 0.8905 32 1 3.4223 3.4223 -0.8895 33 1 5.7527 2.5761 -0.8918 34 1 5.7543 2.5749 0.8883 35 1 7.3035 8.3155 -0.8851 36 1 7.0547 7.3847 -2.3818 37 1 4.1395 6.7191 -2.0861 38 1 3.4795 8.2113 -2.7981 39 1 4.8895 7.4189 -3.5407 40 1 2.7166 10.9883 -2.7570 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395496797.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:26 Heat of formation + Delta-G solvation = -8.207628 kcal Electronic energy + Delta-G solvation = -19957.014782 eV Core-core repulsion = 16774.529282 eV Total energy + Delta-G solvation = -3182.485500 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.07976 -38.37088 -36.11924 -35.57548 -33.78962 -32.40463 -31.20924 -30.45341 -26.97708 -26.55310 -25.17261 -23.18785 -23.01967 -22.17699 -21.08550 -19.51055 -17.63810 -17.08284 -16.67041 -16.51311 -16.28981 -15.00814 -14.85940 -14.63786 -14.17866 -13.77243 -13.18510 -13.10906 -13.02879 -12.65000 -12.39609 -12.24506 -11.75439 -11.73407 -11.60559 -11.28262 -11.14710 -11.02945 -10.95966 -10.79299 -10.64742 -10.51119 -10.16390 -9.96310 -9.87960 -9.80692 -9.11547 -8.92832 -8.39912 -6.04540 -4.13214 1.64477 2.64455 3.28975 3.35136 3.36821 3.39390 3.45307 4.03605 4.37424 4.42947 4.76000 4.82664 4.85914 5.01289 5.07201 5.11370 5.23314 5.26784 5.29749 5.41516 5.48869 5.63559 5.69028 5.85770 5.95206 6.06255 6.09892 6.16698 6.24892 6.47178 6.56834 6.93274 7.00896 7.14820 7.26427 7.64681 7.85619 8.07004 8.31104 8.64262 8.89226 9.52322 11.01502 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.022239 B = 0.003435 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.757238 B = 8150.155914 C = 9122.542646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.388 6.388 4 C 0.067 3.933 5 C -0.115 4.115 6 C -0.019 4.019 7 C 0.163 3.837 8 N -0.399 5.399 9 O 0.067 5.933 10 C 0.217 3.783 11 C -0.027 4.027 12 C 0.050 3.950 13 H 0.031 0.969 14 C -0.137 4.137 15 C -0.518 4.518 16 H 0.060 0.940 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.896 3.104 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.273 1.273 23 N -0.491 5.491 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.010 0.990 38 H 0.082 0.918 39 H 0.029 0.971 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.557 -17.824 4.499 18.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.308 6.308 4 C -0.010 4.010 5 C -0.154 4.154 6 C -0.058 4.058 7 C -0.110 4.110 8 N -0.110 5.110 9 O 0.011 5.989 10 C -0.002 4.002 11 C -0.066 4.066 12 C 0.030 3.970 13 H 0.049 0.951 14 C -0.195 4.195 15 C -0.556 4.556 16 H 0.079 0.921 17 C -0.139 4.139 18 N -0.524 5.524 19 Si 0.723 3.277 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 N -0.225 5.225 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.029 0.971 38 H 0.101 0.899 39 H 0.048 0.952 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.102 -18.188 4.992 18.861 hybrid contribution 0.304 0.763 -0.535 0.980 sum 0.406 -17.425 4.457 17.991 Atomic orbital electron populations 1.21750 0.93746 1.02132 1.03353 1.22452 0.95680 0.83864 0.99936 1.87915 1.21129 1.26332 1.95414 1.22432 0.81321 0.96973 1.00227 1.21448 0.93837 0.95461 1.04630 1.19703 0.95903 0.85867 1.04307 1.25589 1.01221 0.99780 0.84379 1.74537 1.20357 0.91880 1.24253 1.85263 1.63052 1.24966 1.25655 1.29557 0.92348 0.96925 0.81331 1.20845 1.02918 0.86708 0.96154 1.18728 0.88636 0.92729 0.96859 0.95053 1.21819 1.02695 0.96709 0.98255 1.21027 0.93539 1.02622 1.38412 0.92133 1.24957 0.94962 0.98254 0.95698 1.69901 0.99381 1.36450 1.46700 0.86537 0.78235 0.83003 0.79882 1.20642 1.21239 1.19794 1.71945 1.20288 1.01504 1.28745 0.91180 0.91813 0.91701 0.93421 0.93523 0.92988 0.93224 0.90668 0.90053 0.88708 0.89368 0.89160 0.88323 0.97076 0.89914 0.95175 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 37.16 0.38 -0.81 16 2 C 0.06 0.50 6.66 37.16 0.25 0.75 16 3 O -0.39 -4.71 10.34 -35.23 -0.36 -5.08 16 4 C 0.07 0.69 5.94 37.16 0.22 0.91 16 5 C -0.12 -1.44 5.57 -26.73 -0.15 -1.59 16 6 C -0.02 -0.23 5.84 -27.88 -0.16 -0.40 16 7 C 0.16 2.79 7.47 -156.38 -1.17 1.62 16 8 N -0.40 -7.36 12.16 30.90 0.38 -6.98 16 9 O 0.07 1.28 11.31 18.10 0.20 1.48 16 10 C 0.22 4.19 6.97 -13.06 -0.09 4.09 16 11 C -0.03 -0.53 5.26 -27.88 -0.15 -0.67 16 12 C 0.05 1.20 2.29 -91.77 -0.21 0.99 16 13 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 14 C -0.14 -3.33 8.78 37.15 0.33 -3.00 16 15 C -0.52 -13.46 8.56 -34.44 -0.29 -13.75 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 18 N -0.89 -24.95 11.32 55.43 0.63 -24.33 16 19 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 N -0.49 -9.34 10.88 -9.87 -0.11 -9.45 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.09 0.91 8.14 -51.92 -0.42 0.49 16 35 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 36 H 0.10 1.82 8.14 -51.93 -0.42 1.39 16 37 H 0.01 0.24 6.85 -51.93 -0.36 -0.11 16 38 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 336.88 15.07 5.08 5.08 Total: -1.00 -29.63 336.88 -6.90 -36.53 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -6.55 Total: -2.61 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -1.14 Total: -10.24 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.90 Total: -40.76 kcal Atomic # 8 Polarization: -3.44 SS G_CDS: -0.16 Total: -3.60 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.63 -6.90 -36.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395496797.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.322 kcal (2) G-P(sol) polarization free energy of solvation -29.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds