Wall clock time and date at job start Mon Mar 30 2020 07:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42899 * 109.47149 * 2 1 4 4 C 1.42905 * 113.99868 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46903 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.46799 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47042 * 179.97438 * 6 5 4 8 8 N 1.29954 * 126.28649 * 90.02411 * 7 6 5 9 9 O 1.21294 * 110.24985 * 179.73386 * 8 7 6 10 10 C 1.33643 * 109.81343 * 359.97438 * 9 8 7 11 11 C 1.50698 * 126.55336 * 180.02562 * 10 9 8 12 12 C 1.53008 * 109.46860 * 269.97182 * 11 10 9 13 13 H 1.09001 * 109.47134 * 55.00045 * 12 11 10 14 14 C 1.52995 * 109.47233 * 295.00109 * 12 11 10 15 15 C 1.50697 * 109.46856 * 174.99816 * 12 11 10 16 16 H 1.08002 * 120.00263 * 0.02562 * 15 12 11 17 17 C 1.37883 * 119.99928 * 179.97438 * 15 12 11 18 18 N 1.31515 * 119.99815 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 120.00033 * 179.97438 * 17 15 12 20 20 H 1.48496 * 109.46816 * 90.00223 * 19 17 15 21 21 H 1.48497 * 109.47147 * 210.00141 * 19 17 15 22 22 H 1.48498 * 109.47030 * 330.00317 * 19 17 15 23 23 N 1.31132 * 106.89433 * 359.97438 * 10 9 8 24 24 H 1.08991 * 109.47074 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46632 * 299.99710 * 1 2 3 26 26 H 1.08995 * 109.46975 * 59.99461 * 1 2 3 27 27 H 1.09003 * 109.46632 * 240.00290 * 2 1 3 28 28 H 1.08995 * 109.46975 * 120.00539 * 2 1 3 29 29 H 1.08999 * 109.47180 * 59.99907 * 4 3 2 30 30 H 1.09002 * 109.46757 * 300.00188 * 4 3 2 31 31 H 1.08999 * 109.47524 * 59.99817 * 5 4 3 32 32 H 1.08999 * 109.46597 * 299.99471 * 5 4 3 33 33 H 1.08999 * 109.47388 * 59.99543 * 6 5 4 34 34 H 1.09011 * 109.47111 * 299.99426 * 6 5 4 35 35 H 1.08994 * 109.47064 * 29.97104 * 11 10 9 36 36 H 1.09000 * 109.47579 * 149.97736 * 11 10 9 37 37 H 1.08994 * 109.47492 * 59.99626 * 14 12 11 38 38 H 1.08998 * 109.46891 * 180.02562 * 14 12 11 39 39 H 1.09001 * 109.47008 * 300.00012 * 14 12 11 40 40 H 0.96999 * 119.99887 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 -0.0006 5 6 3.8255 2.9383 0.0001 6 6 5.3507 3.0591 -0.0012 7 6 5.7393 4.5151 -0.0011 8 7 5.9390 5.2578 1.0464 9 8 6.2443 6.3829 0.7114 10 6 6.2697 6.4672 -0.6221 11 6 6.6029 7.6897 -1.4379 12 6 5.3232 8.4807 -1.7172 13 1 4.8246 8.7094 -0.7753 14 6 4.3908 7.6476 -2.5988 15 6 5.6709 9.7643 -2.4261 16 1 6.7013 9.9929 -2.6549 17 6 4.6733 10.6465 -2.7834 18 7 3.4184 10.3679 -2.5052 19 14 5.1042 12.2380 -3.6615 20 1 5.0891 12.0132 -5.1293 21 1 4.1085 13.2823 -3.3104 22 1 6.4575 12.6835 -3.2428 23 7 5.9504 5.2826 -1.0851 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.8334 0.9766 -0.8908 30 1 3.8341 0.9763 0.8892 31 1 3.4231 3.4214 0.8905 32 1 3.4223 3.4223 -0.8895 33 1 5.7527 2.5761 -0.8918 34 1 5.7543 2.5749 0.8883 35 1 7.3035 8.3155 -0.8851 36 1 7.0547 7.3847 -2.3818 37 1 4.1395 6.7191 -2.0861 38 1 3.4795 8.2113 -2.7981 39 1 4.8895 7.4189 -3.5407 40 1 2.7166 10.9883 -2.7570 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395496797.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:25 Heat of formation + Delta-G solvation = -26.426450 kcal Electronic energy + Delta-G solvation = -19957.804809 eV Core-core repulsion = 16774.529282 eV Total energy + Delta-G solvation = -3183.275527 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.51953 -39.18149 -37.58627 -37.14975 -35.11871 -33.95327 -32.44225 -31.71031 -28.38056 -27.87964 -27.21099 -24.56111 -23.69316 -23.43832 -22.43479 -21.16523 -19.13442 -18.41046 -18.20931 -17.58988 -17.32400 -16.58103 -16.11450 -15.86911 -15.50816 -15.02662 -14.73412 -14.34167 -14.01214 -13.99802 -13.75902 -13.40746 -13.17082 -13.01512 -12.83591 -12.57129 -12.53481 -12.45774 -12.28933 -12.16791 -12.00603 -11.93546 -11.81477 -11.70665 -11.67821 -10.92665 -10.69594 -10.55334 -10.44339 -8.08239 -6.23296 0.17104 1.24285 1.48081 1.48962 1.58861 1.91758 2.46747 2.54351 2.88596 3.12014 3.21686 3.85239 3.95472 4.10461 4.16648 4.19991 4.35129 4.39489 4.45338 4.48816 4.50529 4.52399 4.59363 4.78439 4.85380 4.88293 4.97232 5.01574 5.04996 5.08027 5.10803 5.16476 5.26106 5.34332 5.61273 5.84555 6.04877 6.28649 6.29012 6.87829 7.18589 7.46185 8.97601 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.022239 B = 0.003435 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.757238 B = 8150.155914 C = 9122.542646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.050 3.950 3 O -0.421 6.421 4 C 0.070 3.930 5 C -0.109 4.109 6 C -0.016 4.016 7 C 0.167 3.833 8 N -0.412 5.412 9 O 0.054 5.946 10 C 0.211 3.789 11 C -0.016 4.016 12 C 0.048 3.952 13 H -0.002 1.002 14 C -0.123 4.123 15 C -0.528 4.528 16 H 0.073 0.927 17 C 0.010 3.990 18 N -0.921 5.921 19 Si 0.960 3.040 20 H -0.277 1.277 21 H -0.290 1.290 22 H -0.261 1.261 23 N -0.504 5.504 24 H 0.093 0.907 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.013 0.987 38 H 0.052 0.948 39 H 0.034 0.966 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.876 -19.170 4.239 19.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.026 4.026 3 O -0.342 6.342 4 C -0.006 4.006 5 C -0.148 4.148 6 C -0.055 4.055 7 C -0.106 4.106 8 N -0.125 5.125 9 O 0.002 5.998 10 C -0.008 4.008 11 C -0.055 4.055 12 C 0.029 3.971 13 H 0.017 0.983 14 C -0.181 4.181 15 C -0.566 4.566 16 H 0.091 0.909 17 C -0.189 4.189 18 N -0.561 5.561 19 Si 0.786 3.214 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.185 1.185 23 N -0.238 5.238 24 H 0.112 0.888 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.032 0.968 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.443 -19.527 4.738 20.145 hybrid contribution -0.154 1.104 -0.424 1.193 sum 1.289 -18.423 4.314 18.965 Atomic orbital electron populations 1.21794 0.93448 1.03408 1.02391 1.22674 0.96049 0.82620 1.01245 1.87875 1.22110 1.28511 1.95695 1.22440 0.80882 0.95176 1.02120 1.21348 0.93870 0.97154 1.02444 1.19958 0.95669 0.83166 1.06676 1.26410 0.99470 1.01318 0.83367 1.74534 1.21302 0.91844 1.24843 1.85245 1.63460 1.25549 1.25587 1.29482 0.92697 0.97110 0.81523 1.20629 1.00857 0.86676 0.97321 1.18609 0.90455 0.93099 0.94953 0.98350 1.21635 1.01530 0.96330 0.98586 1.21450 0.94079 1.03214 1.37844 0.90882 1.25802 0.94859 1.01607 0.96607 1.70055 1.00381 1.37572 1.48065 0.85513 0.78280 0.78934 0.78675 1.20242 1.21614 1.18461 1.71958 1.20451 1.01752 1.29646 0.88794 0.92643 0.92786 0.92183 0.92014 0.91224 0.91044 0.92493 0.92629 0.86577 0.86697 0.87127 0.86922 0.96783 0.92895 0.94665 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 10.28 71.98 0.74 -1.48 16 2 C 0.05 0.79 6.66 71.98 0.48 1.27 16 3 O -0.42 -9.79 10.34 -148.98 -1.54 -11.33 16 4 C 0.07 1.30 5.94 71.98 0.43 1.73 16 5 C -0.11 -2.64 5.57 30.59 0.17 -2.47 16 6 C -0.02 -0.36 5.84 29.85 0.17 -0.19 16 7 C 0.17 5.53 7.47 138.46 1.03 6.57 16 8 N -0.41 -14.93 12.16 -60.33 -0.73 -15.67 16 9 O 0.05 2.07 11.31 74.84 0.85 2.92 16 10 C 0.21 8.02 6.97 88.38 0.62 8.64 16 11 C -0.02 -0.61 5.26 29.85 0.16 -0.45 16 12 C 0.05 2.35 2.29 -11.54 -0.03 2.32 16 13 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 14 C -0.12 -6.06 8.78 71.98 0.63 -5.43 16 15 C -0.53 -27.21 8.56 25.60 0.22 -27.00 16 16 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 17 C 0.01 0.53 5.30 84.66 0.45 0.98 16 18 N -0.92 -52.95 11.32 21.45 0.24 -52.71 16 19 Si 0.96 42.07 29.54 68.60 2.03 44.10 16 20 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 22 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 23 N -0.50 -18.73 10.88 -303.20 -3.30 -22.03 16 24 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.11 2.01 8.14 -2.38 -0.02 2.00 16 35 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 36 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 37 H 0.01 0.63 6.85 -2.39 -0.02 0.62 16 38 H 0.05 2.92 6.07 -2.39 -0.01 2.91 16 39 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -64.11 336.88 3.62 -60.49 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 1.01 Total: 9.75 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: 5.07 Total: -15.52 kcal Atomic # 7 Polarization: -86.61 SS G_CDS: -3.79 Total: -90.40 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: -0.69 Total: -8.42 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -64.11 3.62 -60.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395496797.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.065 kcal (2) G-P(sol) polarization free energy of solvation -64.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds