Wall clock time and date at job start Mon Mar 30 2020 07:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 113.99967 * 2 1 4 4 C 1.53006 * 109.46890 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47127 * 299.99597 * 4 3 2 6 6 C 1.52992 * 109.47223 * 60.00103 * 4 3 2 7 7 C 1.50708 * 109.46735 * 179.97438 * 4 3 2 8 8 N 1.29946 * 126.28603 * 359.68753 * 7 4 3 9 9 O 1.21304 * 110.24557 * 179.84108 * 8 7 4 10 10 C 1.33641 * 109.80979 * 0.43043 * 9 8 7 11 11 C 1.50704 * 126.54876 * 179.71777 * 10 9 8 12 12 C 1.53004 * 109.47044 * 270.02256 * 11 10 9 13 13 H 1.08992 * 109.47267 * 54.99775 * 12 11 10 14 14 C 1.53006 * 109.46501 * 294.99867 * 12 11 10 15 15 C 1.50697 * 109.47239 * 174.99966 * 12 11 10 16 16 H 1.08000 * 120.00061 * 0.02562 * 15 12 11 17 17 C 1.37874 * 120.00082 * 179.97438 * 15 12 11 18 18 N 1.31513 * 119.99851 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 119.99966 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47093 * 90.00656 * 19 17 15 21 21 H 1.48506 * 109.47141 * 210.00808 * 19 17 15 22 22 H 1.48497 * 109.47128 * 330.00210 * 19 17 15 23 23 N 1.31130 * 106.90265 * 359.73150 * 10 9 8 24 24 H 1.09002 * 109.47309 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47308 * 300.00295 * 1 2 3 26 26 H 1.09006 * 109.46986 * 60.00726 * 1 2 3 27 27 H 1.08993 * 109.47660 * 59.99775 * 3 2 1 28 28 H 1.09000 * 109.47075 * 299.99499 * 3 2 1 29 29 H 1.09002 * 109.47153 * 180.02562 * 5 4 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 5 4 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 5 4 3 32 32 H 1.09001 * 109.47066 * 299.99881 * 6 4 3 33 33 H 1.08996 * 109.47747 * 59.99547 * 6 4 3 34 34 H 1.09002 * 109.47103 * 179.97438 * 6 4 3 35 35 H 1.09000 * 109.47283 * 30.01792 * 11 10 9 36 36 H 1.08998 * 109.47383 * 150.01931 * 11 10 9 37 37 H 1.08993 * 109.47079 * 60.00501 * 14 12 11 38 38 H 1.09002 * 109.46395 * 179.97438 * 14 12 11 39 39 H 1.09000 * 109.47310 * 299.99549 * 14 12 11 40 40 H 0.97004 * 119.99520 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9864 0.4256 1.2502 6 6 3.9874 0.4251 -1.2482 7 6 4.1484 2.5614 0.0000 8 7 3.5043 3.6899 -0.0067 9 8 4.2846 4.6187 -0.0020 10 6 5.5386 4.1566 -0.0010 11 6 6.7993 4.9823 -0.0016 12 6 7.2261 5.2604 -1.4444 13 1 6.4014 5.7259 -1.9839 14 6 7.6038 3.9442 -2.1271 15 6 8.4146 6.1869 -1.4470 16 1 8.8249 6.5416 -0.5130 17 6 8.9789 6.5809 -2.6417 18 7 8.4796 6.1486 -3.7789 19 14 10.4517 7.7299 -2.6449 20 1 11.7028 6.9311 -2.6032 21 1 10.4326 8.5558 -3.8790 22 1 10.3905 8.6165 -1.4552 23 7 5.4625 2.8475 0.0003 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8463 -0.8900 29 1 5.0730 0.3399 1.2509 30 1 3.5430 -0.5702 1.2502 31 1 3.6644 0.9667 2.1400 32 1 3.5440 -0.5707 -1.2482 33 1 3.6662 0.9657 -2.1385 34 1 5.0741 0.3394 -1.2480 35 1 6.6156 5.9264 0.5112 36 1 7.5908 4.4374 0.5128 37 1 6.7442 3.2742 -2.1252 38 1 7.9074 4.1423 -3.1550 39 1 8.4286 3.4787 -1.5875 40 1 8.8765 6.4262 -4.6195 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395503410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:56 Heat of formation + Delta-G solvation = 0.186466 kcal Electronic energy + Delta-G solvation = -20880.959181 eV Core-core repulsion = 17698.837676 eV Total energy + Delta-G solvation = -3182.121505 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.11131 -38.77864 -36.40992 -35.68233 -33.92704 -32.23881 -30.56998 -27.69183 -27.28546 -26.68924 -25.67278 -25.18889 -23.81873 -22.31288 -20.27831 -19.04934 -17.64130 -17.05633 -16.38558 -16.14319 -15.97998 -15.55029 -14.66267 -14.32441 -14.12593 -13.77902 -13.39889 -13.13482 -12.72066 -12.44409 -12.29850 -11.88840 -11.85514 -11.66349 -11.43839 -11.33843 -11.24671 -11.01356 -10.93301 -10.72426 -10.65899 -10.42953 -10.17734 -9.97657 -9.89549 -9.84228 -9.13476 -8.94418 -8.41394 -6.06161 -4.14757 1.63347 2.67718 3.27900 3.31145 3.34546 3.36258 3.41853 4.04194 4.36106 4.44472 4.75355 4.88106 4.95774 5.12740 5.14878 5.25399 5.37018 5.42628 5.49388 5.57235 5.76534 5.81256 5.86539 5.92148 6.04860 6.12107 6.19261 6.25367 6.31947 6.46684 6.56001 6.91683 6.92859 7.13142 7.24692 7.63121 7.84018 8.05277 8.29533 8.62268 8.87689 9.50898 10.99882 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.042996 B = 0.003759 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.066071 B = 7446.205510 C = 7553.496023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.077 3.923 4 C 0.036 3.964 5 C -0.132 4.132 6 C -0.134 4.134 7 C 0.174 3.826 8 N -0.403 5.403 9 O 0.065 5.935 10 C 0.218 3.782 11 C -0.027 4.027 12 C 0.050 3.950 13 H 0.031 0.969 14 C -0.137 4.137 15 C -0.518 4.518 16 H 0.060 0.940 17 C 0.064 3.936 18 N -0.887 5.887 19 Si 0.896 3.104 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.273 1.273 23 N -0.484 5.484 24 H 0.086 0.914 25 H 0.040 0.960 26 H 0.041 0.959 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.010 0.990 38 H 0.082 0.918 39 H 0.029 0.971 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.538 -9.935 7.641 17.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.304 6.304 3 C 0.000 4.000 4 C 0.034 3.966 5 C -0.190 4.190 6 C -0.192 4.192 7 C -0.099 4.099 8 N -0.114 5.114 9 O 0.010 5.990 10 C -0.001 4.001 11 C -0.066 4.066 12 C 0.031 3.969 13 H 0.049 0.951 14 C -0.195 4.195 15 C -0.556 4.556 16 H 0.079 0.921 17 C -0.138 4.138 18 N -0.525 5.525 19 Si 0.723 3.277 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 N -0.217 5.217 24 H 0.105 0.895 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.029 0.971 38 H 0.101 0.899 39 H 0.049 0.951 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.113 -10.425 7.442 17.629 hybrid contribution 0.645 1.079 -0.172 1.269 sum -11.467 -9.346 7.270 16.484 Atomic orbital electron populations 1.22731 0.80919 1.02640 1.00100 1.87807 1.19632 1.27465 1.95474 1.22380 0.91963 0.84471 1.01214 1.18730 0.92367 0.86349 0.99162 1.21767 1.02328 1.00151 0.94730 1.21780 1.02459 1.00083 0.94842 1.25430 0.87310 0.96104 1.01058 1.74517 1.17379 0.96553 1.22938 1.85257 1.15474 1.32042 1.66218 1.29576 0.89289 0.89604 0.91661 1.20844 0.85264 0.96398 1.04080 1.18725 0.97005 0.94648 0.86542 0.95088 1.21820 0.97692 0.95968 1.03986 1.21028 1.13767 1.28013 0.92798 0.92135 1.24950 0.97181 0.96180 0.95536 1.69901 1.40919 1.44256 0.97385 0.86538 0.82804 0.80761 0.77562 1.20627 1.21243 1.19786 1.71873 1.16485 1.11604 1.21779 0.89541 0.94119 0.94030 0.92720 0.92584 0.91260 0.90676 0.92907 0.90706 0.92679 0.91156 0.89178 0.88303 0.97068 0.89946 0.95144 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.48 9.35 -35.23 -0.33 -4.81 16 3 C 0.08 0.99 4.31 37.16 0.16 1.15 16 4 C 0.04 0.50 0.82 -155.66 -0.13 0.38 16 5 C -0.13 -1.64 8.31 37.16 0.31 -1.33 16 6 C -0.13 -1.81 8.31 37.15 0.31 -1.50 16 7 C 0.17 3.02 6.40 -156.37 -1.00 2.02 16 8 N -0.40 -7.34 11.47 30.90 0.35 -6.99 16 9 O 0.07 1.24 11.31 18.10 0.20 1.44 16 10 C 0.22 4.14 6.97 -13.05 -0.09 4.05 16 11 C -0.03 -0.51 5.26 -27.88 -0.15 -0.66 16 12 C 0.05 1.20 2.29 -91.77 -0.21 0.99 16 13 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 14 C -0.14 -3.28 8.78 37.16 0.33 -2.96 16 15 C -0.52 -13.37 8.56 -34.44 -0.29 -13.66 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 18 N -0.89 -24.77 11.32 55.43 0.63 -24.14 16 19 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 N -0.48 -9.13 10.88 -9.87 -0.11 -9.24 16 24 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.83 7.68 -51.93 -0.40 0.43 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.88 7.68 -51.93 -0.40 0.49 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 36 H 0.10 1.81 8.14 -51.93 -0.42 1.38 16 37 H 0.01 0.24 6.85 -51.93 -0.36 -0.12 16 38 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 331.69 15.07 5.00 5.00 Total: -1.00 -28.39 331.69 -5.53 -33.92 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -6.51 Total: -2.12 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 0.25 Total: -8.54 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.87 Total: -40.36 kcal Atomic # 8 Polarization: -3.25 SS G_CDS: -0.12 Total: -3.37 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.39 -5.53 -33.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395503410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.103 kcal (2) G-P(sol) polarization free energy of solvation -28.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds