Wall clock time and date at job start Mon Mar 30 2020 07:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 113.99967 * 2 1 4 4 C 1.53006 * 109.46890 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47127 * 299.99597 * 4 3 2 6 6 C 1.52992 * 109.47223 * 60.00103 * 4 3 2 7 7 C 1.50708 * 109.46735 * 179.97438 * 4 3 2 8 8 N 1.29946 * 126.28603 * 359.68753 * 7 4 3 9 9 O 1.21304 * 110.24557 * 179.84108 * 8 7 4 10 10 C 1.33641 * 109.80979 * 0.43043 * 9 8 7 11 11 C 1.50704 * 126.54876 * 179.71777 * 10 9 8 12 12 C 1.53004 * 109.47044 * 270.02256 * 11 10 9 13 13 H 1.08992 * 109.47267 * 54.99775 * 12 11 10 14 14 C 1.53006 * 109.46501 * 294.99867 * 12 11 10 15 15 C 1.50697 * 109.47239 * 174.99966 * 12 11 10 16 16 H 1.08000 * 120.00061 * 0.02562 * 15 12 11 17 17 C 1.37874 * 120.00082 * 179.97438 * 15 12 11 18 18 N 1.31513 * 119.99851 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 119.99966 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47093 * 90.00656 * 19 17 15 21 21 H 1.48506 * 109.47141 * 210.00808 * 19 17 15 22 22 H 1.48497 * 109.47128 * 330.00210 * 19 17 15 23 23 N 1.31130 * 106.90265 * 359.73150 * 10 9 8 24 24 H 1.09002 * 109.47309 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47308 * 300.00295 * 1 2 3 26 26 H 1.09006 * 109.46986 * 60.00726 * 1 2 3 27 27 H 1.08993 * 109.47660 * 59.99775 * 3 2 1 28 28 H 1.09000 * 109.47075 * 299.99499 * 3 2 1 29 29 H 1.09002 * 109.47153 * 180.02562 * 5 4 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 5 4 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 5 4 3 32 32 H 1.09001 * 109.47066 * 299.99881 * 6 4 3 33 33 H 1.08996 * 109.47747 * 59.99547 * 6 4 3 34 34 H 1.09002 * 109.47103 * 179.97438 * 6 4 3 35 35 H 1.09000 * 109.47283 * 30.01792 * 11 10 9 36 36 H 1.08998 * 109.47383 * 150.01931 * 11 10 9 37 37 H 1.08993 * 109.47079 * 60.00501 * 14 12 11 38 38 H 1.09002 * 109.46395 * 179.97438 * 14 12 11 39 39 H 1.09000 * 109.47310 * 299.99549 * 14 12 11 40 40 H 0.97004 * 119.99520 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9864 0.4256 1.2502 6 6 3.9874 0.4251 -1.2482 7 6 4.1484 2.5614 0.0000 8 7 3.5043 3.6899 -0.0067 9 8 4.2846 4.6187 -0.0020 10 6 5.5386 4.1566 -0.0010 11 6 6.7993 4.9823 -0.0016 12 6 7.2261 5.2604 -1.4444 13 1 6.4014 5.7259 -1.9839 14 6 7.6038 3.9442 -2.1271 15 6 8.4146 6.1869 -1.4470 16 1 8.8249 6.5416 -0.5130 17 6 8.9789 6.5809 -2.6417 18 7 8.4796 6.1486 -3.7789 19 14 10.4517 7.7299 -2.6449 20 1 11.7028 6.9311 -2.6032 21 1 10.4326 8.5558 -3.8790 22 1 10.3905 8.6165 -1.4552 23 7 5.4625 2.8475 0.0003 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8463 -0.8900 29 1 5.0730 0.3399 1.2509 30 1 3.5430 -0.5702 1.2502 31 1 3.6644 0.9667 2.1400 32 1 3.5440 -0.5707 -1.2482 33 1 3.6662 0.9657 -2.1385 34 1 5.0741 0.3394 -1.2480 35 1 6.6156 5.9264 0.5112 36 1 7.5908 4.4374 0.5128 37 1 6.7442 3.2742 -2.1252 38 1 7.9074 4.1423 -3.1550 39 1 8.4286 3.4787 -1.5875 40 1 8.8765 6.4262 -4.6195 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395503410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:56 Heat of formation + Delta-G solvation = -17.147969 kcal Electronic energy + Delta-G solvation = -20881.710858 eV Core-core repulsion = 17698.837676 eV Total energy + Delta-G solvation = -3182.873182 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.55599 -39.77052 -37.64833 -37.31741 -35.38192 -33.92761 -32.25790 -28.71245 -28.32427 -28.15088 -27.21033 -26.68057 -25.10371 -23.82991 -21.94091 -20.41082 -19.13496 -18.41269 -18.19017 -17.28498 -16.87126 -16.64954 -16.52395 -15.74457 -15.40536 -14.87352 -14.74208 -14.47365 -14.30938 -13.90805 -13.50348 -13.36621 -13.03026 -12.85580 -12.83010 -12.77895 -12.56878 -12.50505 -12.31726 -12.20586 -12.11262 -12.08841 -11.75712 -11.66221 -11.63596 -10.92209 -10.71557 -10.70710 -10.43913 -8.08096 -6.22875 0.16016 1.24820 1.48110 1.49271 1.58845 1.90661 2.26497 2.47878 2.86563 3.15656 3.22028 3.70241 3.78837 3.84221 4.19567 4.33874 4.41073 4.43847 4.52085 4.54922 4.55685 4.62816 4.74269 4.77924 4.83941 4.84667 4.86185 4.92050 5.05186 5.06525 5.17183 5.21603 5.25611 5.35510 5.61881 5.85486 6.05709 6.08052 6.29653 6.88124 7.16417 7.46577 8.97653 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.042996 B = 0.003759 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.066071 B = 7446.205510 C = 7553.496023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.393 6.393 3 C 0.086 3.914 4 C 0.030 3.970 5 C -0.125 4.125 6 C -0.128 4.128 7 C 0.178 3.822 8 N -0.410 5.410 9 O 0.056 5.944 10 C 0.212 3.788 11 C -0.015 4.015 12 C 0.049 3.951 13 H -0.001 1.001 14 C -0.123 4.123 15 C -0.528 4.528 16 H 0.072 0.928 17 C 0.011 3.989 18 N -0.921 5.921 19 Si 0.959 3.041 20 H -0.277 1.277 21 H -0.290 1.290 22 H -0.261 1.261 23 N -0.494 5.494 24 H 0.107 0.893 25 H 0.048 0.952 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.043 0.957 34 H 0.059 0.941 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.015 0.985 38 H 0.052 0.948 39 H 0.034 0.966 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.712 -10.536 8.964 18.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.312 6.312 3 C 0.009 3.991 4 C 0.028 3.972 5 C -0.182 4.182 6 C -0.186 4.186 7 C -0.096 4.096 8 N -0.123 5.123 9 O 0.003 5.997 10 C -0.007 4.007 11 C -0.054 4.054 12 C 0.029 3.971 13 H 0.017 0.983 14 C -0.181 4.181 15 C -0.566 4.566 16 H 0.090 0.910 17 C -0.188 4.188 18 N -0.560 5.560 19 Si 0.785 3.215 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.185 1.185 23 N -0.227 5.227 24 H 0.126 0.874 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.113 0.887 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.034 0.966 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.292 -11.015 8.785 18.697 hybrid contribution 0.610 1.197 -0.595 1.470 sum -11.682 -9.817 8.190 17.318 Atomic orbital electron populations 1.22967 0.79183 1.04257 1.00681 1.87782 1.21468 1.26447 1.95528 1.22182 0.91062 0.85147 1.00751 1.18975 0.93277 0.84764 1.00192 1.21725 1.01970 1.00765 0.93783 1.21744 1.01865 1.00897 0.94112 1.26035 0.86819 0.97165 0.99550 1.74516 1.17383 0.96784 1.23626 1.85244 1.15482 1.32462 1.66506 1.29503 0.89356 0.89786 0.92039 1.20631 0.85756 0.97800 1.01230 1.18605 0.95520 0.93873 0.89060 0.98259 1.21634 0.97834 0.96344 1.02254 1.21449 1.14070 1.27920 0.93188 0.90967 1.25776 0.99896 0.97771 0.95325 1.70051 1.42399 1.45643 0.97897 0.85531 0.79471 0.78870 0.77632 1.20279 1.21613 1.18522 1.71878 1.17427 1.11534 1.21908 0.87446 0.93307 0.93706 0.92731 0.93540 0.91885 0.88935 0.92768 0.88716 0.93794 0.92141 0.87152 0.86956 0.96633 0.92888 0.94716 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.39 -8.33 9.35 -148.98 -1.39 -9.72 16 3 C 0.09 2.09 4.31 71.98 0.31 2.40 16 4 C 0.03 0.80 0.82 -52.93 -0.04 0.76 16 5 C -0.12 -2.87 8.31 71.98 0.60 -2.27 16 6 C -0.13 -3.33 8.31 71.98 0.60 -2.73 16 7 C 0.18 6.03 6.40 138.47 0.89 6.91 16 8 N -0.41 -14.77 11.47 -60.33 -0.69 -15.47 16 9 O 0.06 2.10 11.31 74.85 0.85 2.95 16 10 C 0.21 7.96 6.97 88.38 0.62 8.58 16 11 C -0.02 -0.57 5.26 29.85 0.16 -0.41 16 12 C 0.05 2.34 2.29 -11.54 -0.03 2.31 16 13 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 14 C -0.12 -5.95 8.78 71.98 0.63 -5.32 16 15 C -0.53 -26.98 8.56 25.60 0.22 -26.76 16 16 H 0.07 3.45 7.74 -2.91 -0.02 3.42 16 17 C 0.01 0.59 5.30 84.65 0.45 1.03 16 18 N -0.92 -52.30 11.32 21.45 0.24 -52.06 16 19 Si 0.96 41.76 29.54 68.60 2.03 43.78 16 20 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 22 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 23 N -0.49 -18.27 10.88 -303.20 -3.30 -21.57 16 24 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.04 0.63 8.14 -2.38 -0.02 0.61 16 27 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.09 1.81 7.68 -2.39 -0.02 1.79 16 31 H 0.05 1.22 8.14 -2.38 -0.02 1.21 16 32 H 0.09 2.06 7.68 -2.39 -0.02 2.04 16 33 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 35 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 36 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 37 H 0.01 0.69 6.85 -2.39 -0.02 0.67 16 38 H 0.05 2.88 6.07 -2.39 -0.01 2.87 16 39 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -59.95 331.69 4.38 -55.57 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 1.01 Total: 10.40 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: 5.64 Total: -13.89 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -3.75 Total: -89.09 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -0.55 Total: -6.77 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.78 kcal Total: -59.95 4.38 -55.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395503410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.423 kcal (2) G-P(sol) polarization free energy of solvation -59.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds