Wall clock time and date at job start Mon Mar 30 2020 07:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47329 * 299.99846 * 4 3 2 6 6 C 1.53003 * 109.47142 * 60.00295 * 4 3 2 7 7 C 1.50702 * 109.47298 * 179.97438 * 4 3 2 8 8 N 1.29950 * 126.28276 * 0.02969 * 7 4 3 9 9 O 1.21303 * 110.24738 * 179.97438 * 8 7 4 10 10 C 1.33641 * 109.81527 * 359.97438 * 9 8 7 11 11 C 1.50695 * 126.55151 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.47241 * 269.97077 * 11 10 9 13 13 H 1.09000 * 109.47538 * 305.00737 * 12 11 10 14 14 C 1.53009 * 109.46781 * 65.00199 * 12 11 10 15 15 C 1.50693 * 109.47476 * 184.99943 * 12 11 10 16 16 H 1.08005 * 119.99890 * 0.02562 * 15 12 11 17 17 C 1.37875 * 120.00471 * 180.02562 * 15 12 11 18 18 N 1.31514 * 119.99553 * 0.02562 * 17 15 12 19 19 Si 1.86795 * 120.00433 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.47368 * 59.99983 * 19 17 15 21 21 H 1.48501 * 109.47357 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47016 * 299.99747 * 19 17 15 23 23 N 1.31139 * 106.89548 * 359.76468 * 10 9 8 24 24 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 25 25 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 27 27 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 28 28 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 29 29 H 1.08997 * 109.47124 * 60.00243 * 5 4 3 30 30 H 1.08999 * 109.47164 * 179.97438 * 5 4 3 31 31 H 1.08997 * 109.47215 * 299.99848 * 5 4 3 32 32 H 1.08997 * 109.47258 * 59.99704 * 6 4 3 33 33 H 1.08999 * 109.47269 * 179.97438 * 6 4 3 34 34 H 1.09010 * 109.46813 * 299.99766 * 6 4 3 35 35 H 1.08993 * 109.47540 * 29.97811 * 11 10 9 36 36 H 1.09007 * 109.47101 * 149.97875 * 11 10 9 37 37 H 1.09000 * 109.46646 * 59.99991 * 14 12 11 38 38 H 1.08995 * 109.46985 * 180.02562 * 14 12 11 39 39 H 1.09000 * 109.47322 * 300.00137 * 14 12 11 40 40 H 0.97011 * 119.99839 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9864 0.4257 1.2502 6 6 3.9874 0.4252 -1.2483 7 6 4.1484 2.5614 0.0000 8 7 3.5043 3.6900 -0.0004 9 8 4.2846 4.6187 -0.0004 10 6 5.5386 4.1568 0.0007 11 6 6.7992 4.9825 0.0005 12 6 7.2270 5.2601 -1.4420 13 1 7.3250 4.3171 -1.9798 14 6 6.1725 6.1311 -2.1280 15 6 8.5511 5.9794 -1.4438 16 1 9.0391 6.2148 -0.5095 17 6 9.1397 6.3372 -2.6382 18 7 8.5453 6.0511 -3.7759 19 14 10.7815 7.2283 -2.6404 20 1 11.8048 6.3823 -1.9755 21 1 11.1965 7.4978 -4.0406 22 1 10.6485 8.5127 -1.9071 23 7 5.4625 2.8476 0.0064 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 1.6886 1.8464 0.8899 29 1 3.5432 -0.5701 1.2502 30 1 5.0730 0.3392 1.2504 31 1 3.6645 0.9667 2.1399 32 1 3.6661 0.9660 -2.1385 33 1 5.0740 0.3395 -1.2481 34 1 3.5440 -0.5706 -1.2483 35 1 6.6152 5.9267 0.5130 36 1 7.5905 4.4377 0.5156 37 1 6.0744 7.0741 -1.5902 38 1 6.4769 6.3284 -3.1558 39 1 5.2146 5.6108 -2.1267 40 1 8.9592 6.3031 -4.6162 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395503413.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:59 Heat of formation + Delta-G solvation = -1.082531 kcal Electronic energy + Delta-G solvation = -20844.662244 eV Core-core repulsion = 17662.485711 eV Total energy + Delta-G solvation = -3182.176533 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.11300 -38.77863 -36.39821 -35.65804 -33.99246 -32.24736 -30.56852 -27.69159 -27.28461 -26.65426 -25.75584 -25.19217 -23.82899 -22.33913 -20.12293 -19.20351 -17.65225 -17.10815 -16.36948 -16.13564 -15.97946 -15.55548 -14.65125 -14.33374 -13.89134 -13.77750 -13.42869 -13.35120 -12.82753 -12.44716 -12.12192 -11.86846 -11.84885 -11.70017 -11.42902 -11.35393 -11.25151 -10.99961 -10.93736 -10.85979 -10.70601 -10.43626 -10.22487 -9.97412 -9.91146 -9.84079 -9.13517 -8.98290 -8.41633 -6.06543 -4.15142 1.63421 2.66795 3.29194 3.31119 3.34201 3.35060 3.42023 4.04090 4.36039 4.43987 4.75331 4.87978 4.95690 5.12832 5.14924 5.24983 5.37046 5.42692 5.49416 5.57074 5.76533 5.81256 5.86560 5.91544 6.04323 6.12175 6.19186 6.25125 6.31644 6.44992 6.54830 6.81935 6.92784 7.02492 7.19540 7.61834 7.83026 8.02336 8.28031 8.62199 8.87137 9.50477 10.99609 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.040255 B = 0.003744 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.404450 B = 7476.252031 C = 7512.701053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.077 3.923 4 C 0.036 3.964 5 C -0.132 4.132 6 C -0.134 4.134 7 C 0.175 3.825 8 N -0.403 5.403 9 O 0.068 5.932 10 C 0.219 3.781 11 C -0.027 4.027 12 C 0.051 3.949 13 H 0.035 0.965 14 C -0.141 4.141 15 C -0.518 4.518 16 H 0.060 0.940 17 C 0.064 3.936 18 N -0.887 5.887 19 Si 0.896 3.104 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 N -0.490 5.490 24 H 0.041 0.959 25 H 0.086 0.914 26 H 0.040 0.960 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.032 0.968 38 H 0.086 0.914 39 H 0.003 0.997 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.976 -9.150 7.584 16.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.304 6.304 3 C 0.000 4.000 4 C 0.034 3.966 5 C -0.190 4.190 6 C -0.192 4.192 7 C -0.099 4.099 8 N -0.114 5.114 9 O 0.012 5.988 10 C 0.000 4.000 11 C -0.066 4.066 12 C 0.031 3.969 13 H 0.053 0.947 14 C -0.199 4.199 15 C -0.557 4.557 16 H 0.078 0.922 17 C -0.138 4.138 18 N -0.525 5.525 19 Si 0.724 3.276 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 N -0.223 5.223 24 H 0.060 0.940 25 H 0.105 0.895 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.051 0.949 38 H 0.105 0.895 39 H 0.023 0.977 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.551 -9.640 7.394 17.468 hybrid contribution 0.692 0.992 -0.168 1.221 sum -11.858 -8.648 7.227 16.360 Atomic orbital electron populations 1.22732 0.80916 1.02642 1.00102 1.87809 1.19635 1.27456 1.95476 1.22377 0.91944 0.84475 1.01224 1.18734 0.92386 0.86330 0.99181 1.21768 1.02342 1.00157 0.94726 1.21786 1.02462 1.00100 0.94843 1.25413 0.87231 0.96137 1.01090 1.74515 1.17454 0.96546 1.22862 1.85273 1.15451 1.31951 1.66088 1.29561 0.89354 0.89525 0.91532 1.20849 0.85202 0.96485 1.04082 1.18729 0.94676 0.96909 0.86538 0.94707 1.21889 0.95095 0.98263 1.04620 1.20984 1.03831 1.38052 0.92789 0.92163 1.24947 0.97646 0.95713 0.95518 1.69885 1.38560 1.46665 0.97400 0.86592 0.83838 0.80156 0.77028 1.20159 1.21303 1.20165 1.71846 1.16692 1.11650 1.22098 0.94035 0.89537 0.94110 0.92575 0.92711 0.90660 0.91253 0.92898 0.92660 0.91158 0.90675 0.89242 0.88201 0.94924 0.89534 0.97749 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.49 9.35 -35.23 -0.33 -4.82 16 3 C 0.08 0.99 4.31 37.16 0.16 1.15 16 4 C 0.04 0.50 0.82 -155.66 -0.13 0.38 16 5 C -0.13 -1.65 8.31 37.16 0.31 -1.34 16 6 C -0.13 -1.82 8.31 37.16 0.31 -1.51 16 7 C 0.17 3.05 6.40 -156.37 -1.00 2.05 16 8 N -0.40 -7.39 11.47 30.90 0.35 -7.03 16 9 O 0.07 1.29 10.75 18.11 0.19 1.48 16 10 C 0.22 4.21 6.92 -13.05 -0.09 4.12 16 11 C -0.03 -0.52 5.26 -27.89 -0.15 -0.67 16 12 C 0.05 1.21 2.29 -91.77 -0.21 1.00 16 13 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 14 C -0.14 -3.32 8.78 37.16 0.33 -2.99 16 15 C -0.52 -13.39 8.56 -34.44 -0.29 -13.69 16 16 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 17 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 18 N -0.89 -24.76 11.32 55.43 0.63 -24.13 16 19 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 23 N -0.49 -9.39 11.55 -9.87 -0.11 -9.50 16 24 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.84 7.68 -51.93 -0.40 0.44 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.89 7.68 -51.92 -0.40 0.49 16 35 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 36 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 37 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 2.27 6.07 -51.93 -0.32 1.96 16 39 H 0.00 0.08 6.93 -51.93 -0.36 -0.28 16 40 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 331.85 15.07 5.00 5.00 Total: -1.00 -28.43 331.85 -5.55 -33.98 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -6.51 Total: -1.96 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: 0.25 Total: -8.50 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.87 Total: -40.66 kcal Atomic # 8 Polarization: -3.20 SS G_CDS: -0.13 Total: -3.34 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.43 -5.55 -33.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395503413.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.895 kcal (2) G-P(sol) polarization free energy of solvation -28.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds