Wall clock time and date at job start Mon Mar 30 2020 07:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00126 * 2 1 4 4 C 1.52996 * 109.47405 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47516 * 54.99530 * 4 3 2 6 6 C 1.53006 * 109.47108 * 294.99844 * 4 3 2 7 7 C 1.53002 * 109.47532 * 175.00166 * 4 3 2 8 8 C 1.50695 * 109.47197 * 185.00090 * 7 4 3 9 9 N 1.29946 * 126.29059 * 89.97414 * 8 7 4 10 10 O 1.21304 * 110.25017 * 179.97438 * 9 8 7 11 11 C 1.33644 * 109.81172 * 0.02562 * 10 9 8 12 12 C 1.50698 * 126.54726 * 179.97438 * 11 10 9 13 13 H 1.09008 * 109.46977 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.47043 * 300.01166 * 12 11 10 15 15 C 1.52997 * 109.47721 * 60.01632 * 12 11 10 16 16 C 1.50701 * 109.47212 * 174.99887 * 15 12 11 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 12 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 12 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47432 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46890 * 120.00210 * 20 18 16 23 23 H 1.48501 * 109.47062 * 240.00257 * 20 18 16 24 24 N 1.31128 * 106.90081 * 0.21548 * 11 10 9 25 25 H 1.09000 * 109.47223 * 300.00375 * 1 2 3 26 26 H 1.09001 * 109.46912 * 59.99724 * 1 2 3 27 27 H 1.08993 * 109.47089 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47419 * 59.99750 * 3 2 1 29 29 H 1.09001 * 109.47152 * 300.00363 * 3 2 1 30 30 H 1.09001 * 109.47126 * 179.97438 * 6 4 3 31 31 H 1.09004 * 109.47059 * 300.00301 * 6 4 3 32 32 H 1.08999 * 109.46810 * 59.99794 * 6 4 3 33 33 H 1.09007 * 109.47168 * 64.99778 * 7 4 3 34 34 H 1.08999 * 109.46786 * 305.00261 * 7 4 3 35 35 H 1.08998 * 109.47430 * 180.02562 * 14 12 11 36 36 H 1.08996 * 109.47271 * 300.01083 * 14 12 11 37 37 H 1.09008 * 109.46731 * 60.00465 * 14 12 11 38 38 H 1.09002 * 109.47153 * 54.99889 * 15 12 11 39 39 H 1.09001 * 109.46832 * 295.00079 * 15 12 11 40 40 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8508 0.5685 -0.8426 6 6 3.9963 0.5365 1.3065 7 6 4.1573 2.5769 -0.1263 8 6 5.6537 2.4494 -0.2505 9 7 6.3264 2.3304 -1.3559 10 8 7.5132 2.2494 -1.1185 11 6 7.7164 2.3104 0.2010 12 6 9.0455 2.2451 0.9082 13 1 8.8886 2.3203 1.9843 14 6 9.7306 0.9158 0.5847 15 6 9.9302 3.4021 0.4396 16 6 11.2104 3.4094 1.2346 17 1 11.3767 2.6632 1.9975 18 6 12.1700 4.3682 0.9873 19 7 11.9677 5.2765 0.0580 20 14 13.7572 4.3768 1.9722 21 1 13.7398 3.2584 2.9489 22 1 14.9114 4.2123 1.0524 23 1 13.8824 5.6664 2.6979 24 7 6.5380 2.4327 0.7629 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 5.0828 0.4500 1.3058 31 1 3.6809 1.1526 2.1485 32 1 3.5532 -0.4554 1.3960 33 1 3.9149 3.1645 0.7593 34 1 3.7603 3.0736 -1.0116 35 1 10.6917 0.8682 1.0965 36 1 9.1003 0.0915 0.9184 37 1 9.8875 0.8404 -0.4914 38 1 9.4043 4.3451 0.5890 39 1 10.1602 3.2780 -0.6186 40 1 12.6426 5.9512 -0.1157 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404112300.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:46 Heat of formation + Delta-G solvation = -8.698911 kcal Electronic energy + Delta-G solvation = -20247.191416 eV Core-core repulsion = 17064.684612 eV Total energy + Delta-G solvation = -3182.506804 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.09969 -38.57954 -36.40926 -35.81773 -34.22406 -32.52361 -30.89870 -28.07172 -27.43102 -27.13209 -25.70542 -24.60363 -23.10012 -22.31419 -20.69223 -19.34046 -17.56952 -17.04212 -16.62028 -16.40401 -16.21297 -15.51501 -14.75535 -14.57907 -14.32312 -13.92012 -13.52418 -13.26426 -12.73165 -12.63284 -12.47781 -12.04085 -11.92973 -11.83098 -11.49004 -11.37862 -11.11837 -11.04591 -10.99168 -10.89724 -10.76438 -10.55234 -10.51723 -10.15736 -9.94994 -9.85682 -9.24491 -9.16552 -8.45408 -6.09036 -4.12865 1.63664 2.60974 3.27731 3.35263 3.37835 3.39211 3.45216 4.00564 4.33824 4.42017 4.66403 4.77129 4.86741 5.02158 5.05006 5.18274 5.22520 5.27587 5.33683 5.35524 5.53403 5.63770 5.70448 5.82309 5.84564 5.91307 6.06130 6.09647 6.25267 6.31311 6.38326 6.57175 6.68300 6.83269 6.87049 7.48140 7.56339 7.86686 8.22788 8.62680 8.91798 9.51667 11.02343 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.050006 B = 0.003170 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.797966 B = 8832.070821 C = 8989.572181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.068 3.932 4 C -0.085 4.085 5 H 0.081 0.919 6 C -0.142 4.142 7 C -0.019 4.019 8 C 0.166 3.834 9 N -0.397 5.397 10 O 0.075 5.925 11 C 0.219 3.781 12 C -0.001 4.001 13 H 0.105 0.895 14 C -0.135 4.135 15 C 0.028 3.972 16 C -0.520 4.520 17 H 0.063 0.937 18 C 0.059 3.941 19 N -0.891 5.891 20 Si 0.895 3.105 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.284 1.284 24 N -0.497 5.497 25 H 0.041 0.959 26 H 0.040 0.960 27 H 0.085 0.915 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.040 0.960 37 H 0.058 0.942 38 H 0.022 0.978 39 H 0.029 0.971 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.337 -8.178 0.481 20.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.008 4.008 4 C -0.104 4.104 5 H 0.099 0.901 6 C -0.199 4.199 7 C -0.058 4.058 8 C -0.107 4.107 9 N -0.108 5.108 10 O 0.019 5.981 11 C -0.001 4.001 12 C -0.022 4.022 13 H 0.123 0.877 14 C -0.193 4.193 15 C -0.010 4.010 16 C -0.558 4.558 17 H 0.081 0.919 18 C -0.143 4.143 19 N -0.530 5.530 20 Si 0.723 3.277 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.210 1.210 24 N -0.231 5.231 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.040 0.960 39 H 0.047 0.953 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.816 -8.166 -0.059 20.511 hybrid contribution 0.777 0.512 0.436 1.028 sum -18.039 -7.654 0.378 19.599 Atomic orbital electron populations 1.22734 0.81098 1.02721 0.99943 1.87881 1.19553 1.27918 1.95403 1.22542 0.93203 0.84706 1.00392 1.21060 0.92865 0.95804 1.00691 0.90081 1.21778 1.01796 1.00679 0.95682 1.19836 0.83938 0.97711 1.04334 1.25490 0.99380 1.01375 0.84452 1.74569 0.89953 1.21984 1.24276 1.85275 1.19772 1.65404 1.27670 1.29599 0.98293 0.91623 0.80540 1.20342 0.83131 1.00224 0.98470 0.87659 1.21781 1.01294 0.93767 1.02473 1.19247 0.93357 0.90647 0.97712 1.21095 1.01101 1.13823 1.19788 0.91891 1.25009 0.98656 0.95378 0.95250 1.69977 1.34921 1.16323 1.31762 0.86489 0.83247 0.78011 0.79986 1.19568 1.20967 1.21010 1.71940 0.98494 1.22278 1.30386 0.94066 0.94128 0.89669 0.92844 0.93094 0.92106 0.92459 0.92103 0.88598 0.89255 0.89674 0.94087 0.92333 0.96006 0.95273 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.12 10.24 -35.23 -0.36 -4.48 16 3 C 0.07 0.64 5.32 37.16 0.20 0.84 16 4 C -0.08 -0.97 2.62 -90.62 -0.24 -1.20 16 5 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 6 C -0.14 -1.72 8.90 37.16 0.33 -1.39 16 7 C -0.02 -0.24 5.32 -27.88 -0.15 -0.38 16 8 C 0.17 2.80 6.67 -156.36 -1.04 1.76 16 9 N -0.40 -7.41 12.16 30.90 0.38 -7.04 16 10 O 0.07 1.48 11.31 18.10 0.20 1.68 16 11 C 0.22 4.23 7.02 -13.06 -0.09 4.14 16 12 C 0.00 -0.02 2.81 -91.77 -0.26 -0.28 16 13 H 0.11 2.02 8.14 -51.92 -0.42 1.59 16 14 C -0.14 -2.32 8.98 37.16 0.33 -1.99 16 15 C 0.03 0.69 4.43 -27.88 -0.12 0.57 16 16 C -0.52 -13.59 8.41 -34.44 -0.29 -13.87 16 17 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -25.87 13.29 55.43 0.74 -25.14 16 20 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 N -0.50 -9.21 10.87 -9.87 -0.11 -9.31 16 25 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.86 6.83 -51.93 -0.35 0.51 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.71 7.82 -51.93 -0.41 0.31 16 33 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.48 6.95 -51.93 -0.36 1.12 16 36 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 1.00 8.14 -51.92 -0.42 0.57 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 336.61 15.07 5.07 5.07 Total: -1.00 -29.98 336.61 -5.96 -35.93 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -6.55 Total: -3.46 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -0.31 Total: -8.97 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: 1.00 Total: -41.49 kcal Atomic # 8 Polarization: -2.64 SS G_CDS: -0.16 Total: -2.79 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.98 -5.96 -35.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404112300.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.234 kcal (2) G-P(sol) polarization free energy of solvation -29.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds