Wall clock time and date at job start Mon Mar 30 2020 07:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00126 * 2 1 4 4 C 1.52996 * 109.47405 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47516 * 54.99530 * 4 3 2 6 6 C 1.53006 * 109.47108 * 294.99844 * 4 3 2 7 7 C 1.53002 * 109.47532 * 175.00166 * 4 3 2 8 8 C 1.50695 * 109.47197 * 185.00090 * 7 4 3 9 9 N 1.29946 * 126.29059 * 89.97414 * 8 7 4 10 10 O 1.21304 * 110.25017 * 179.97438 * 9 8 7 11 11 C 1.33644 * 109.81172 * 0.02562 * 10 9 8 12 12 C 1.50698 * 126.54726 * 179.97438 * 11 10 9 13 13 H 1.09008 * 109.46977 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.47043 * 300.01166 * 12 11 10 15 15 C 1.52997 * 109.47721 * 60.01632 * 12 11 10 16 16 C 1.50701 * 109.47212 * 174.99887 * 15 12 11 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 12 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 12 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47432 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46890 * 120.00210 * 20 18 16 23 23 H 1.48501 * 109.47062 * 240.00257 * 20 18 16 24 24 N 1.31128 * 106.90081 * 0.21548 * 11 10 9 25 25 H 1.09000 * 109.47223 * 300.00375 * 1 2 3 26 26 H 1.09001 * 109.46912 * 59.99724 * 1 2 3 27 27 H 1.08993 * 109.47089 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47419 * 59.99750 * 3 2 1 29 29 H 1.09001 * 109.47152 * 300.00363 * 3 2 1 30 30 H 1.09001 * 109.47126 * 179.97438 * 6 4 3 31 31 H 1.09004 * 109.47059 * 300.00301 * 6 4 3 32 32 H 1.08999 * 109.46810 * 59.99794 * 6 4 3 33 33 H 1.09007 * 109.47168 * 64.99778 * 7 4 3 34 34 H 1.08999 * 109.46786 * 305.00261 * 7 4 3 35 35 H 1.08998 * 109.47430 * 180.02562 * 14 12 11 36 36 H 1.08996 * 109.47271 * 300.01083 * 14 12 11 37 37 H 1.09008 * 109.46731 * 60.00465 * 14 12 11 38 38 H 1.09002 * 109.47153 * 54.99889 * 15 12 11 39 39 H 1.09001 * 109.46832 * 295.00079 * 15 12 11 40 40 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8508 0.5685 -0.8426 6 6 3.9963 0.5365 1.3065 7 6 4.1573 2.5769 -0.1263 8 6 5.6537 2.4494 -0.2505 9 7 6.3264 2.3304 -1.3559 10 8 7.5132 2.2494 -1.1185 11 6 7.7164 2.3104 0.2010 12 6 9.0455 2.2451 0.9082 13 1 8.8886 2.3203 1.9843 14 6 9.7306 0.9158 0.5847 15 6 9.9302 3.4021 0.4396 16 6 11.2104 3.4094 1.2346 17 1 11.3767 2.6632 1.9975 18 6 12.1700 4.3682 0.9873 19 7 11.9677 5.2765 0.0580 20 14 13.7572 4.3768 1.9722 21 1 13.7398 3.2584 2.9489 22 1 14.9114 4.2123 1.0524 23 1 13.8824 5.6664 2.6979 24 7 6.5380 2.4327 0.7629 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 5.0828 0.4500 1.3058 31 1 3.6809 1.1526 2.1485 32 1 3.5532 -0.4554 1.3960 33 1 3.9149 3.1645 0.7593 34 1 3.7603 3.0736 -1.0116 35 1 10.6917 0.8682 1.0965 36 1 9.1003 0.0915 0.9184 37 1 9.8875 0.8404 -0.4914 38 1 9.4043 4.3451 0.5890 39 1 10.1602 3.2780 -0.6186 40 1 12.6426 5.9512 -0.1157 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404112300.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:46 Heat of formation + Delta-G solvation = -27.907839 kcal Electronic energy + Delta-G solvation = -20248.024378 eV Core-core repulsion = 17064.684612 eV Total energy + Delta-G solvation = -3183.339765 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.55070 -39.35057 -37.59126 -37.41509 -35.49335 -34.40961 -32.42017 -29.08943 -28.94439 -28.22875 -26.45475 -26.24654 -24.64634 -23.86005 -21.82563 -20.69825 -19.04137 -18.63633 -18.24885 -17.34978 -16.95065 -16.50966 -16.35112 -16.19589 -15.31287 -15.25367 -14.66274 -14.43141 -14.41487 -13.91933 -13.68610 -13.33518 -13.19237 -13.01215 -12.80318 -12.74680 -12.61728 -12.39444 -12.27173 -12.21216 -12.11279 -11.97585 -11.81903 -11.68755 -11.52170 -11.22732 -10.75227 -10.59500 -10.55318 -8.17649 -6.28080 0.14327 1.21500 1.46180 1.47398 1.59784 1.88873 2.43354 2.54007 2.89933 3.11944 3.18016 3.74736 3.84190 4.01933 4.07926 4.17580 4.29159 4.36552 4.46080 4.48965 4.52837 4.59029 4.64806 4.70036 4.81324 4.86960 4.88017 4.93848 5.01431 5.05216 5.10285 5.17064 5.32557 5.36569 5.41873 5.59121 5.80628 6.17102 6.24447 6.86335 7.15232 7.41238 8.95172 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.050006 B = 0.003170 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.797966 B = 8832.070821 C = 8989.572181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.072 3.928 4 C -0.079 4.079 5 H 0.063 0.937 6 C -0.137 4.137 7 C -0.020 4.020 8 C 0.175 3.825 9 N -0.413 5.413 10 O 0.054 5.946 11 C 0.210 3.790 12 C 0.009 3.991 13 H 0.113 0.887 14 C -0.129 4.129 15 C 0.036 3.964 16 C -0.526 4.526 17 H 0.079 0.921 18 C 0.000 4.000 19 N -0.936 5.936 20 Si 0.966 3.034 21 H -0.254 1.254 22 H -0.282 1.282 23 H -0.284 1.284 24 N -0.502 5.502 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.035 0.965 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.054 0.946 38 H -0.012 1.012 39 H 0.004 0.996 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.453 -8.968 1.697 21.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C -0.005 4.005 4 C -0.098 4.098 5 H 0.082 0.918 6 C -0.195 4.195 7 C -0.058 4.058 8 C -0.098 4.098 9 N -0.127 5.127 10 O 0.003 5.997 11 C -0.009 4.009 12 C -0.011 4.011 13 H 0.131 0.869 14 C -0.187 4.187 15 C -0.002 4.002 16 C -0.564 4.564 17 H 0.097 0.903 18 C -0.198 4.198 19 N -0.576 5.576 20 Si 0.791 3.209 21 H -0.177 1.177 22 H -0.208 1.208 23 H -0.210 1.210 24 N -0.236 5.236 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.112 0.888 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.006 0.994 39 H 0.022 0.978 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.921 -8.979 1.161 21.882 hybrid contribution 1.005 0.750 0.043 1.255 sum -18.916 -8.229 1.203 20.664 Atomic orbital electron populations 1.22917 0.79380 1.03721 1.00991 1.87836 1.21484 1.28578 1.95643 1.22509 0.91320 0.84729 1.01922 1.20969 0.94657 0.94701 0.99509 0.91842 1.21728 1.00062 1.01137 0.96555 1.20116 0.80809 0.98742 1.06152 1.26311 1.01070 0.99006 0.83405 1.74567 0.89665 1.23358 1.25125 1.85257 1.20560 1.66096 1.27828 1.29523 0.98551 0.92179 0.80675 1.20123 0.82772 0.99568 0.98664 0.86898 1.21733 1.01479 0.93118 1.02332 1.19037 0.93757 0.91129 0.96253 1.21533 1.01419 1.13719 1.19724 0.90324 1.25962 1.02446 0.95088 0.96315 1.70122 1.36291 1.17384 1.33792 0.85379 0.78640 0.78329 0.78594 1.17742 1.20823 1.21050 1.71959 0.98479 1.22214 1.30914 0.92925 0.93120 0.88838 0.91207 0.91622 0.94564 0.91437 0.92030 0.86816 0.87298 0.89700 0.91401 0.92723 0.99362 0.97799 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.42 -7.98 10.24 -148.98 -1.53 -9.50 16 3 C 0.07 1.16 5.32 71.98 0.38 1.54 16 4 C -0.08 -1.66 2.62 -10.79 -0.03 -1.69 16 5 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 6 C -0.14 -3.14 8.90 71.98 0.64 -2.50 16 7 C -0.02 -0.44 5.32 29.85 0.16 -0.28 16 8 C 0.18 5.78 6.67 138.46 0.92 6.70 16 9 N -0.41 -15.44 12.16 -60.30 -0.73 -16.17 16 10 O 0.05 2.18 11.31 74.82 0.85 3.03 16 11 C 0.21 8.20 7.02 88.38 0.62 8.82 16 12 C 0.01 0.36 2.81 -11.54 -0.03 0.32 16 13 H 0.11 4.25 8.14 -2.38 -0.02 4.23 16 14 C -0.13 -4.31 8.98 71.98 0.65 -3.66 16 15 C 0.04 1.82 4.43 29.85 0.13 1.95 16 16 C -0.53 -27.55 8.41 25.60 0.22 -27.34 16 17 H 0.08 3.79 7.06 -2.91 -0.02 3.77 16 18 C 0.00 -0.02 5.46 84.66 0.46 0.45 16 19 N -0.94 -55.60 13.29 21.45 0.28 -55.32 16 20 Si 0.97 42.33 29.54 68.60 2.03 44.36 16 21 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 22 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 N -0.50 -18.34 10.87 -303.18 -3.29 -21.64 16 25 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 30 H 0.04 0.99 6.83 -2.39 -0.02 0.98 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.38 7.82 -2.39 -0.02 1.36 16 33 H 0.11 2.19 8.14 -2.38 -0.02 2.17 16 34 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.08 2.84 6.95 -2.39 -0.02 2.82 16 36 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 38 H -0.01 -0.68 8.14 -2.39 -0.02 -0.69 16 39 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 40 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -65.18 336.61 3.98 -61.20 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: 1.01 Total: 8.17 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: 5.37 Total: -14.14 kcal Atomic # 7 Polarization: -89.38 SS G_CDS: -3.74 Total: -93.13 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.68 Total: -6.47 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -65.18 3.98 -61.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404112300.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.290 kcal (2) G-P(sol) polarization free energy of solvation -65.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds