Wall clock time and date at job start Mon Mar 30 2020 07:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.08990 * 109.47170 * 54.99895 * 4 3 2 6 6 O 1.42905 * 109.46848 * 294.99674 * 4 3 2 7 7 C 1.42907 * 113.99648 * 150.00501 * 6 4 3 8 8 C 1.50700 * 109.46738 * 175.00110 * 4 3 2 9 9 N 1.29951 * 126.29116 * 74.69126 * 8 4 3 10 10 O 1.21300 * 110.25104 * 179.84005 * 9 8 4 11 11 C 1.33644 * 109.81054 * 0.42255 * 10 9 8 12 12 C 1.50698 * 126.54888 * 179.75777 * 11 10 9 13 13 C 1.52993 * 109.47312 * 269.97636 * 12 11 10 14 14 C 1.53001 * 109.47460 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47531 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99662 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00272 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99603 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00191 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47081 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.46933 * 120.00006 * 19 17 15 22 22 H 1.48499 * 109.47090 * 240.00172 * 19 17 15 23 23 N 1.31129 * 106.89878 * 359.74005 * 11 10 9 24 24 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 26 26 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 27 27 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 28 28 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 29 29 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 30 30 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 31 31 H 1.08995 * 109.46420 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.46528 * 300.00034 * 7 6 4 33 33 H 1.08998 * 109.46833 * 59.99905 * 7 6 4 34 34 H 1.09010 * 109.46945 * 29.97726 * 12 11 10 35 35 H 1.09003 * 109.47112 * 149.97183 * 12 11 10 36 36 H 1.09002 * 109.47182 * 299.99612 * 13 12 11 37 37 H 1.09003 * 109.47402 * 59.99725 * 13 12 11 38 38 H 1.08997 * 109.46826 * 300.00290 * 14 13 12 39 39 H 1.09003 * 109.47091 * 59.99469 * 14 13 12 40 40 H 0.97006 * 119.99753 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9329 0.8530 -0.8426 6 8 4.0468 0.8728 1.2202 7 6 5.3064 0.2088 1.0989 8 6 4.0723 2.8578 -0.1245 9 7 4.0684 3.7599 0.8109 10 8 4.5431 4.7964 0.3965 11 6 4.8976 4.6522 -0.8840 12 6 5.5189 5.7035 -1.7670 13 6 4.4155 6.4891 -2.4784 14 6 5.0463 7.5561 -3.3754 15 6 3.9595 8.3295 -4.0766 16 1 2.9226 8.0843 -3.9004 17 6 4.2889 9.3502 -4.9431 18 7 5.5517 9.6484 -5.1579 19 14 2.9418 10.3085 -5.8128 20 1 1.6155 9.7807 -5.4032 21 1 3.0383 11.7437 -5.4440 22 1 3.1007 10.1631 -7.2821 23 7 4.6018 3.4211 -1.2250 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 5.5984 -0.1961 2.0678 32 1 5.2209 -0.6032 0.3768 33 1 6.0602 0.9192 0.7593 34 1 6.1145 6.3837 -1.1581 35 1 6.1588 5.2239 -2.5077 36 1 3.8199 5.8089 -3.0873 37 1 3.7755 6.9687 -1.7377 38 1 5.6422 8.2363 -2.7669 39 1 5.6860 7.0762 -4.1161 40 1 5.7835 10.3663 -5.7678 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594530315.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:17 Heat of formation + Delta-G solvation = -11.412402 kcal Electronic energy + Delta-G solvation = -20007.700360 eV Core-core repulsion = 16825.075890 eV Total energy + Delta-G solvation = -3182.624470 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.43153 -38.86565 -35.88453 -35.20103 -34.73988 -32.94714 -31.38998 -29.83781 -27.76667 -26.68811 -25.18191 -24.27474 -22.95932 -21.58311 -20.92133 -20.28744 -17.88050 -17.52373 -16.98555 -16.28988 -15.79708 -15.59392 -15.01316 -14.72548 -14.46005 -14.09383 -13.71956 -13.56056 -12.68665 -12.62490 -12.49304 -12.29351 -12.12894 -11.93174 -11.60405 -11.45797 -11.30459 -11.18969 -10.94410 -10.89336 -10.85824 -10.80584 -10.58135 -10.23282 -9.87691 -9.85442 -9.40754 -9.12331 -8.39851 -6.04931 -4.07313 1.31190 2.27608 3.03166 3.24081 3.29388 3.37204 3.41447 3.66936 4.24893 4.43228 4.54949 4.65858 4.81457 4.92413 5.06479 5.08698 5.22792 5.31594 5.32449 5.36592 5.43125 5.49674 5.55909 5.62199 5.63925 5.74444 5.85947 5.94927 6.04185 6.07944 6.10053 6.47558 6.61704 6.76442 6.93141 7.59149 7.70421 7.93729 8.31495 8.35257 8.99154 9.57289 11.06399 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.024522 B = 0.003312 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.576293 B = 8451.426858 C = 9257.292811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.112 4.112 4 C 0.186 3.814 5 H 0.093 0.907 6 O -0.367 6.367 7 C 0.028 3.972 8 C 0.134 3.866 9 N -0.369 5.369 10 O 0.075 5.925 11 C 0.203 3.797 12 C -0.033 4.033 13 C -0.106 4.106 14 C 0.023 3.977 15 C -0.522 4.522 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 N -0.487 5.487 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.040 0.960 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.716 -18.741 10.820 21.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.151 4.151 4 C 0.126 3.874 5 H 0.111 0.889 6 O -0.283 6.283 7 C -0.069 4.069 8 C -0.140 4.140 9 N -0.077 5.077 10 O 0.016 5.984 11 C -0.016 4.016 12 C -0.072 4.072 13 C -0.145 4.145 14 C -0.014 4.014 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 N -0.222 5.222 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.043 -19.149 11.454 22.520 hybrid contribution -0.313 0.796 -0.832 1.193 sum -3.356 -18.353 10.622 21.469 Atomic orbital electron populations 1.21761 0.95469 1.01693 1.02057 1.21464 0.96112 0.95613 1.02532 1.21727 0.90851 0.98649 1.03823 1.20277 0.94961 0.83592 0.88598 0.88927 1.88009 1.36837 1.72186 1.31313 1.22875 0.85275 0.95940 1.02796 1.26408 1.01219 1.00415 0.85967 1.74608 1.16437 0.93500 1.23122 1.85324 1.56119 1.30473 1.26532 1.29364 0.94406 0.94131 0.83718 1.20660 0.99343 0.91945 0.95245 1.21739 0.95865 0.98122 0.98784 1.19109 0.96272 0.92219 0.93843 1.21235 0.93093 1.16336 1.25319 0.92569 1.25008 0.95412 0.97215 0.96755 1.69965 1.16244 1.30547 1.36621 0.86531 0.82208 0.79830 0.79423 1.19729 1.20975 1.20975 1.71905 1.17972 1.05843 1.26469 0.92596 0.92602 0.92609 0.91922 0.91073 0.90384 0.89993 0.89173 0.93427 0.94130 0.88228 0.87470 0.92356 0.92516 0.96057 0.96081 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.15 0.37 -0.81 16 2 C -0.12 -1.02 5.83 -26.74 -0.16 -1.18 16 3 C -0.11 -1.21 4.90 -26.73 -0.13 -1.34 16 4 C 0.19 2.26 2.66 -27.88 -0.07 2.19 16 5 H 0.09 1.00 7.79 -51.93 -0.40 0.60 16 6 O -0.37 -4.43 9.87 -35.23 -0.35 -4.78 16 7 C 0.03 0.25 10.81 101.05 1.09 1.34 16 8 C 0.13 2.06 7.06 -156.37 -1.10 0.95 16 9 N -0.37 -6.15 12.16 30.90 0.38 -5.77 16 10 O 0.07 1.23 11.31 18.10 0.20 1.43 16 11 C 0.20 3.25 7.77 -13.06 -0.10 3.15 16 12 C -0.03 -0.51 5.84 -27.89 -0.16 -0.67 16 13 C -0.11 -2.04 5.13 -26.73 -0.14 -2.18 16 14 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 15 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 19 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 N -0.49 -7.99 11.55 -9.87 -0.11 -8.11 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.62 7.82 -51.93 -0.41 0.21 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.35 8.08 -51.93 -0.42 -0.07 16 33 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 1.36 8.14 -51.92 -0.42 0.94 16 35 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 342.22 15.07 5.16 5.16 Total: -1.00 -30.83 342.22 -6.65 -37.48 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -6.69 Total: -5.01 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -0.95 Total: -11.26 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 1.00 Total: -39.30 kcal Atomic # 8 Polarization: -3.20 SS G_CDS: -0.14 Total: -3.35 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.83 -6.65 -37.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594530315.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.068 kcal (2) G-P(sol) polarization free energy of solvation -30.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds