Wall clock time and date at job start Mon Mar 30 2020 07:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.08990 * 109.47170 * 54.99895 * 4 3 2 6 6 O 1.42905 * 109.46848 * 294.99674 * 4 3 2 7 7 C 1.42907 * 113.99648 * 150.00501 * 6 4 3 8 8 C 1.50700 * 109.46738 * 175.00110 * 4 3 2 9 9 N 1.29951 * 126.29116 * 74.69126 * 8 4 3 10 10 O 1.21300 * 110.25104 * 179.84005 * 9 8 4 11 11 C 1.33644 * 109.81054 * 0.42255 * 10 9 8 12 12 C 1.50698 * 126.54888 * 179.75777 * 11 10 9 13 13 C 1.52993 * 109.47312 * 269.97636 * 12 11 10 14 14 C 1.53001 * 109.47460 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47531 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99662 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00272 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99603 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00191 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47081 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.46933 * 120.00006 * 19 17 15 22 22 H 1.48499 * 109.47090 * 240.00172 * 19 17 15 23 23 N 1.31129 * 106.89878 * 359.74005 * 11 10 9 24 24 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 26 26 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 27 27 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 28 28 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 29 29 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 30 30 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 31 31 H 1.08995 * 109.46420 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.46528 * 300.00034 * 7 6 4 33 33 H 1.08998 * 109.46833 * 59.99905 * 7 6 4 34 34 H 1.09010 * 109.46945 * 29.97726 * 12 11 10 35 35 H 1.09003 * 109.47112 * 149.97183 * 12 11 10 36 36 H 1.09002 * 109.47182 * 299.99612 * 13 12 11 37 37 H 1.09003 * 109.47402 * 59.99725 * 13 12 11 38 38 H 1.08997 * 109.46826 * 300.00290 * 14 13 12 39 39 H 1.09003 * 109.47091 * 59.99469 * 14 13 12 40 40 H 0.97006 * 119.99753 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9329 0.8530 -0.8426 6 8 4.0468 0.8728 1.2202 7 6 5.3064 0.2088 1.0989 8 6 4.0723 2.8578 -0.1245 9 7 4.0684 3.7599 0.8109 10 8 4.5431 4.7964 0.3965 11 6 4.8976 4.6522 -0.8840 12 6 5.5189 5.7035 -1.7670 13 6 4.4155 6.4891 -2.4784 14 6 5.0463 7.5561 -3.3754 15 6 3.9595 8.3295 -4.0766 16 1 2.9226 8.0843 -3.9004 17 6 4.2889 9.3502 -4.9431 18 7 5.5517 9.6484 -5.1579 19 14 2.9418 10.3085 -5.8128 20 1 1.6155 9.7807 -5.4032 21 1 3.0383 11.7437 -5.4440 22 1 3.1007 10.1631 -7.2821 23 7 4.6018 3.4211 -1.2250 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 5.5984 -0.1961 2.0678 32 1 5.2209 -0.6032 0.3768 33 1 6.0602 0.9192 0.7593 34 1 6.1145 6.3837 -1.1581 35 1 6.1588 5.2239 -2.5077 36 1 3.8199 5.8089 -3.0873 37 1 3.7755 6.9687 -1.7377 38 1 5.6422 8.2363 -2.7669 39 1 5.6860 7.0762 -4.1161 40 1 5.7835 10.3663 -5.7678 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594530315.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:16 Heat of formation + Delta-G solvation = -30.740265 kcal Electronic energy + Delta-G solvation = -20008.538479 eV Core-core repulsion = 16825.075890 eV Total energy + Delta-G solvation = -3183.462589 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -46.68502 -39.76308 -37.23421 -36.48736 -35.69119 -34.72528 -32.93580 -30.74487 -29.46975 -27.43138 -26.14955 -26.02921 -24.26977 -22.59335 -22.18666 -21.64894 -19.14667 -18.81372 -18.35962 -17.80645 -16.80817 -16.55443 -16.41723 -16.04926 -15.74535 -15.45798 -14.53411 -14.41549 -14.30352 -14.06187 -13.77719 -13.34809 -13.18906 -13.11391 -12.90120 -12.71719 -12.66311 -12.49494 -12.37581 -12.19366 -12.00951 -11.95257 -11.57405 -11.56298 -11.49945 -11.26760 -11.09082 -10.83997 -10.52369 -8.18217 -6.27549 0.05100 1.05649 1.41631 1.43008 1.55034 1.77303 2.27924 2.43452 2.65652 3.10461 3.16136 3.65371 3.79171 3.98226 4.13544 4.18536 4.20585 4.22219 4.36175 4.41410 4.48343 4.62354 4.65538 4.74366 4.74969 4.77204 4.84903 4.96104 4.99252 5.01882 5.18908 5.19036 5.28181 5.42434 5.54228 5.75758 5.87825 5.92533 6.27155 6.88810 7.07270 7.41278 8.93412 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.024522 B = 0.003312 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.576293 B = 8451.426858 C = 9257.292811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.109 4.109 4 C 0.184 3.816 5 H 0.109 0.891 6 O -0.380 6.380 7 C 0.022 3.978 8 C 0.137 3.863 9 N -0.387 5.387 10 O 0.068 5.932 11 C 0.204 3.796 12 C -0.022 4.022 13 C -0.092 4.092 14 C 0.026 3.974 15 C -0.543 4.543 16 H 0.056 0.944 17 C 0.003 3.997 18 N -0.929 5.929 19 Si 0.959 3.041 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.279 1.279 23 N -0.499 5.499 24 H 0.068 0.932 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.069 0.931 33 H 0.027 0.973 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.007 0.993 39 H 0.004 0.996 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.430 -19.877 10.861 22.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.147 4.147 4 C 0.124 3.876 5 H 0.126 0.874 6 O -0.297 6.297 7 C -0.074 4.074 8 C -0.137 4.137 9 N -0.097 5.097 10 O 0.011 5.989 11 C -0.015 4.015 12 C -0.061 4.061 13 C -0.130 4.130 14 C -0.011 4.011 15 C -0.581 4.581 16 H 0.074 0.926 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.784 3.216 20 H -0.190 1.190 21 H -0.204 1.204 22 H -0.204 1.204 23 N -0.234 5.234 24 H 0.087 0.913 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.125 0.875 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.026 0.974 39 H 0.023 0.977 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.755 -20.284 11.506 23.621 hybrid contribution -0.059 1.108 -0.819 1.379 sum -3.814 -19.176 10.687 22.282 Atomic orbital electron populations 1.21766 0.94902 1.02501 1.01810 1.21428 0.96536 0.93956 1.03132 1.21715 0.90035 1.00111 1.02864 1.20516 0.95626 0.82098 0.89345 0.87363 1.87997 1.38019 1.72310 1.31378 1.23077 0.83780 0.96027 1.04521 1.27053 1.00016 1.01456 0.85207 1.74604 1.17366 0.93893 1.23847 1.85307 1.56306 1.30605 1.26646 1.29342 0.94247 0.94206 0.83740 1.20505 0.98114 0.91943 0.95503 1.21434 0.96572 0.96980 0.98062 1.18992 0.95355 0.92937 0.93859 1.21697 0.93890 1.16863 1.25680 0.92604 1.25868 0.97670 0.98336 0.97609 1.70071 1.18145 1.31287 1.37442 0.85490 0.79500 0.78371 0.78243 1.18977 1.20414 1.20428 1.71922 1.18310 1.06125 1.26993 0.91256 0.93011 0.92744 0.90716 0.91003 0.91811 0.90467 0.87463 0.91246 0.95403 0.86223 0.86389 0.92976 0.92519 0.97431 0.97748 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 71.98 0.71 -1.41 16 2 C -0.11 -1.73 5.83 30.59 0.18 -1.55 16 3 C -0.11 -2.25 4.90 30.59 0.15 -2.10 16 4 C 0.18 4.26 2.66 29.85 0.08 4.34 16 5 H 0.11 2.13 7.79 -2.39 -0.02 2.11 16 6 O -0.38 -8.66 9.87 -148.98 -1.47 -10.13 16 7 C 0.02 0.36 10.81 113.37 1.23 1.59 16 8 C 0.14 4.09 7.06 138.46 0.98 5.07 16 9 N -0.39 -12.73 12.16 -60.30 -0.73 -13.46 16 10 O 0.07 2.21 11.31 74.83 0.85 3.05 16 11 C 0.20 6.35 7.77 88.38 0.69 7.04 16 12 C -0.02 -0.65 5.84 29.85 0.17 -0.48 16 13 C -0.09 -3.48 5.13 30.59 0.16 -3.32 16 14 C 0.03 1.25 4.97 29.85 0.15 1.40 16 15 C -0.54 -29.93 9.11 25.60 0.23 -29.70 16 16 H 0.06 3.00 7.74 -2.91 -0.02 2.98 16 17 C 0.00 0.18 5.46 84.66 0.46 0.64 16 18 N -0.93 -54.70 13.29 21.45 0.28 -54.42 16 19 Si 0.96 43.53 29.54 68.60 2.03 45.55 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 23 N -0.50 -15.87 11.55 -303.18 -3.50 -19.37 16 24 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 1.11 7.82 -2.39 -0.02 1.09 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 0.84 8.08 -2.39 -0.02 0.82 16 33 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.12 3.09 8.14 -2.38 -0.02 3.07 16 35 H 0.12 3.29 8.14 -2.39 -0.02 3.27 16 36 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 40 H 0.26 14.59 8.31 -92.70 -0.77 13.82 16 Total: -1.00 -65.11 342.22 3.64 -61.47 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: 1.00 Total: 5.77 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: 5.19 Total: -18.48 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -3.95 Total: -87.25 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -0.62 Total: -7.08 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -65.11 3.64 -61.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594530315.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.732 kcal (2) G-P(sol) polarization free energy of solvation -65.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds