Wall clock time and date at job start Mon Mar 30 2020 07:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47456 * 2 1 4 4 C 1.52995 * 109.47158 * 175.00590 * 3 2 1 5 5 H 1.08999 * 109.47421 * 305.29971 * 4 3 2 6 6 O 1.42900 * 109.47342 * 65.30043 * 4 3 2 7 7 C 1.42896 * 114.00245 * 205.18077 * 6 4 3 8 8 C 1.50703 * 109.47223 * 185.29700 * 4 3 2 9 9 N 1.29952 * 126.28320 * 285.02540 * 8 4 3 10 10 O 1.21298 * 110.24623 * 179.73296 * 9 8 4 11 11 C 1.33641 * 109.81598 * 359.97438 * 10 9 8 12 12 C 1.50697 * 126.55304 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47457 * 269.97653 * 12 11 10 14 14 C 1.52995 * 109.47436 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47342 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99716 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00159 * 180.02562 * 15 14 13 18 18 N 1.31507 * 120.00002 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99918 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47003 * 60.00133 * 19 17 15 21 21 H 1.48500 * 109.47168 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47308 * 300.00217 * 19 17 15 23 23 N 1.31136 * 106.89480 * 0.02562 * 11 10 9 24 24 H 1.08994 * 109.47439 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47208 * 300.00556 * 1 2 3 26 26 H 1.09008 * 109.46906 * 60.00079 * 1 2 3 27 27 H 1.08999 * 109.47208 * 239.99444 * 2 1 3 28 28 H 1.09008 * 109.46906 * 119.99921 * 2 1 3 29 29 H 1.08992 * 109.47168 * 55.00428 * 3 2 1 30 30 H 1.08999 * 109.46535 * 295.00421 * 3 2 1 31 31 H 1.09007 * 109.47613 * 64.97196 * 7 6 4 32 32 H 1.09004 * 109.47383 * 184.97261 * 7 6 4 33 33 H 1.09003 * 109.47469 * 304.97767 * 7 6 4 34 34 H 1.09000 * 109.47237 * 29.97735 * 12 11 10 35 35 H 1.09005 * 109.47068 * 149.97791 * 12 11 10 36 36 H 1.09004 * 109.47404 * 300.00422 * 13 12 11 37 37 H 1.09005 * 109.46869 * 60.00016 * 13 12 11 38 38 H 1.09000 * 109.47339 * 300.00131 * 14 13 12 39 39 H 1.09000 * 109.47075 * 60.00674 * 14 13 12 40 40 H 0.97001 * 120.00354 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4442 0.1256 5 1 3.8574 0.8754 1.0081 6 8 4.1394 0.8465 -1.0383 7 6 5.4342 0.2819 -0.8229 8 6 4.0565 2.8628 0.2564 9 7 4.1344 3.7408 -0.6984 10 8 4.5652 4.7904 -0.2693 11 6 4.8098 4.6785 1.0397 12 6 5.3517 5.7531 1.9466 13 6 6.8799 5.6818 1.9656 14 6 7.4300 6.7733 2.8858 15 6 8.9353 6.7035 2.9040 16 1 9.4482 5.9551 2.3180 17 6 9.6576 7.5942 3.6694 18 7 9.0329 8.5045 4.3840 19 14 11.5234 7.5072 3.6923 20 1 12.0454 7.7104 2.3170 21 1 12.0574 8.5666 4.5855 22 1 11.9507 6.1758 4.1923 23 7 4.4893 3.4544 1.3840 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 1.6055 1.9815 0.8418 30 1 1.7516 1.9297 -0.9314 31 1 5.3553 -0.5533 -0.1268 32 1 5.8385 -0.0725 -1.7711 33 1 6.0968 1.0406 -0.4062 34 1 5.0380 6.7304 1.5797 35 1 4.9685 5.6039 2.9561 36 1 7.1936 4.7045 2.3324 37 1 7.2631 5.8311 0.9561 38 1 7.1164 7.7504 2.5185 39 1 7.0469 6.6245 3.8954 40 1 9.5410 9.1314 4.9222 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594530323.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:20 Heat of formation + Delta-G solvation = -11.485484 kcal Electronic energy + Delta-G solvation = -20003.558066 eV Core-core repulsion = 16820.930428 eV Total energy + Delta-G solvation = -3182.627639 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.43827 -38.84669 -35.88360 -35.21463 -34.76246 -32.94967 -31.39003 -29.85501 -27.77073 -26.62810 -25.20604 -24.28088 -22.96214 -21.61046 -20.89490 -20.32268 -17.86551 -17.52846 -16.98931 -16.29310 -15.78184 -15.57574 -15.03514 -14.72163 -14.47159 -14.09271 -13.73216 -13.54623 -12.72967 -12.62353 -12.51019 -12.30453 -12.09235 -11.92087 -11.59488 -11.48071 -11.35001 -11.18895 -10.95661 -10.91423 -10.87142 -10.78067 -10.62191 -10.20678 -9.88003 -9.85551 -9.41502 -9.15250 -8.39689 -6.05049 -4.07696 1.30601 2.27125 3.02671 3.27766 3.31323 3.35838 3.38456 3.64360 4.24829 4.42729 4.53995 4.63897 4.78003 4.93760 5.09325 5.14697 5.23112 5.31177 5.31512 5.36062 5.47028 5.48706 5.53290 5.59889 5.61846 5.73589 5.81163 5.92151 6.03650 6.04345 6.09537 6.46730 6.60821 6.78761 6.92296 7.58176 7.70019 7.93179 8.30944 8.34717 8.98202 9.56728 11.06199 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.033291 B = 0.003099 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.868324 B = 9033.871869 C = 9406.635019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.109 4.109 4 C 0.185 3.815 5 H 0.092 0.908 6 O -0.367 6.367 7 C 0.027 3.973 8 C 0.132 3.868 9 N -0.369 5.369 10 O 0.075 5.925 11 C 0.203 3.797 12 C -0.033 4.033 13 C -0.106 4.106 14 C 0.023 3.977 15 C -0.523 4.523 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 N -0.487 5.487 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.042 0.958 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.073 -14.831 -7.867 21.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.148 4.148 4 C 0.125 3.875 5 H 0.110 0.890 6 O -0.284 6.284 7 C -0.069 4.069 8 C -0.142 4.142 9 N -0.077 5.077 10 O 0.016 5.984 11 C -0.016 4.016 12 C -0.072 4.072 13 C -0.145 4.145 14 C -0.014 4.014 15 C -0.562 4.562 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 N -0.222 5.222 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.109 0.891 33 H 0.061 0.939 34 H 0.118 0.882 35 H 0.126 0.874 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.428 -15.235 -8.490 22.635 hybrid contribution 1.420 0.235 0.377 1.487 sum -13.008 -15.000 -8.113 21.448 Atomic orbital electron populations 1.21766 0.95531 1.01725 1.01938 1.21468 0.95968 0.95628 1.02683 1.21687 0.90746 0.98615 1.03722 1.20304 0.93977 0.83112 0.90081 0.88993 1.87995 1.32645 1.74534 1.33190 1.22873 0.84262 0.97228 1.02573 1.26463 1.01855 1.00711 0.85147 1.74611 1.16738 0.93324 1.23021 1.85322 1.58637 1.29781 1.24707 1.29369 0.93712 0.94989 0.83547 1.20661 0.98820 0.92080 0.95644 1.21738 0.88647 1.02235 1.01880 1.19096 0.95688 0.92533 0.94046 1.21156 0.91646 1.15905 1.27453 0.92711 1.25000 0.98589 0.95350 0.95385 1.69937 1.35637 1.18651 1.29134 0.86646 0.85617 0.77700 0.77984 1.20214 1.21237 1.20231 1.71909 1.18287 1.05034 1.26939 0.92566 0.92691 0.92637 0.91016 0.91881 0.90126 0.90429 0.93407 0.89146 0.93934 0.88201 0.87421 0.92419 0.92560 0.96052 0.96072 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.12 -0.98 5.78 -26.73 -0.15 -1.13 16 3 C -0.11 -1.11 4.90 -26.73 -0.13 -1.25 16 4 C 0.19 2.26 2.65 -27.88 -0.07 2.19 16 5 H 0.09 1.01 7.89 -51.93 -0.41 0.60 16 6 O -0.37 -4.59 9.99 -35.23 -0.35 -4.94 16 7 C 0.03 0.28 10.80 101.05 1.09 1.37 16 8 C 0.13 2.03 6.82 -156.37 -1.07 0.96 16 9 N -0.37 -6.12 12.16 30.90 0.38 -5.75 16 10 O 0.07 1.22 11.31 18.11 0.20 1.43 16 11 C 0.20 3.25 7.77 -13.05 -0.10 3.14 16 12 C -0.03 -0.51 5.84 -27.89 -0.16 -0.67 16 13 C -0.11 -2.04 5.13 -26.73 -0.14 -2.18 16 14 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 15 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 19 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 N -0.49 -7.97 11.55 -9.87 -0.11 -8.08 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 27 H 0.07 0.61 7.96 -51.93 -0.41 0.19 16 28 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.40 8.14 -51.92 -0.42 -0.03 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.04 0.50 7.95 -51.93 -0.41 0.09 16 34 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 342.14 15.07 5.16 5.16 Total: -1.00 -30.71 342.14 -6.63 -37.33 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -6.70 Total: -5.02 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -0.92 Total: -11.00 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 1.00 Total: -39.26 kcal Atomic # 8 Polarization: -3.36 SS G_CDS: -0.15 Total: -3.51 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.71 -6.63 -37.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594530323.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.849 kcal (2) G-P(sol) polarization free energy of solvation -30.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds