Wall clock time and date at job start Mon Mar 30 2020 07:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47456 * 2 1 4 4 C 1.52995 * 109.47158 * 175.00590 * 3 2 1 5 5 H 1.08999 * 109.47421 * 305.29971 * 4 3 2 6 6 O 1.42900 * 109.47342 * 65.30043 * 4 3 2 7 7 C 1.42896 * 114.00245 * 205.18077 * 6 4 3 8 8 C 1.50703 * 109.47223 * 185.29700 * 4 3 2 9 9 N 1.29952 * 126.28320 * 285.02540 * 8 4 3 10 10 O 1.21298 * 110.24623 * 179.73296 * 9 8 4 11 11 C 1.33641 * 109.81598 * 359.97438 * 10 9 8 12 12 C 1.50697 * 126.55304 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47457 * 269.97653 * 12 11 10 14 14 C 1.52995 * 109.47436 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47342 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99716 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00159 * 180.02562 * 15 14 13 18 18 N 1.31507 * 120.00002 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99918 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47003 * 60.00133 * 19 17 15 21 21 H 1.48500 * 109.47168 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47308 * 300.00217 * 19 17 15 23 23 N 1.31136 * 106.89480 * 0.02562 * 11 10 9 24 24 H 1.08994 * 109.47439 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47208 * 300.00556 * 1 2 3 26 26 H 1.09008 * 109.46906 * 60.00079 * 1 2 3 27 27 H 1.08999 * 109.47208 * 239.99444 * 2 1 3 28 28 H 1.09008 * 109.46906 * 119.99921 * 2 1 3 29 29 H 1.08992 * 109.47168 * 55.00428 * 3 2 1 30 30 H 1.08999 * 109.46535 * 295.00421 * 3 2 1 31 31 H 1.09007 * 109.47613 * 64.97196 * 7 6 4 32 32 H 1.09004 * 109.47383 * 184.97261 * 7 6 4 33 33 H 1.09003 * 109.47469 * 304.97767 * 7 6 4 34 34 H 1.09000 * 109.47237 * 29.97735 * 12 11 10 35 35 H 1.09005 * 109.47068 * 149.97791 * 12 11 10 36 36 H 1.09004 * 109.47404 * 300.00422 * 13 12 11 37 37 H 1.09005 * 109.46869 * 60.00016 * 13 12 11 38 38 H 1.09000 * 109.47339 * 300.00131 * 14 13 12 39 39 H 1.09000 * 109.47075 * 60.00674 * 14 13 12 40 40 H 0.97001 * 120.00354 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4442 0.1256 5 1 3.8574 0.8754 1.0081 6 8 4.1394 0.8465 -1.0383 7 6 5.4342 0.2819 -0.8229 8 6 4.0565 2.8628 0.2564 9 7 4.1344 3.7408 -0.6984 10 8 4.5652 4.7904 -0.2693 11 6 4.8098 4.6785 1.0397 12 6 5.3517 5.7531 1.9466 13 6 6.8799 5.6818 1.9656 14 6 7.4300 6.7733 2.8858 15 6 8.9353 6.7035 2.9040 16 1 9.4482 5.9551 2.3180 17 6 9.6576 7.5942 3.6694 18 7 9.0329 8.5045 4.3840 19 14 11.5234 7.5072 3.6923 20 1 12.0454 7.7104 2.3170 21 1 12.0574 8.5666 4.5855 22 1 11.9507 6.1758 4.1923 23 7 4.4893 3.4544 1.3840 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 1.6055 1.9815 0.8418 30 1 1.7516 1.9297 -0.9314 31 1 5.3553 -0.5533 -0.1268 32 1 5.8385 -0.0725 -1.7711 33 1 6.0968 1.0406 -0.4062 34 1 5.0380 6.7304 1.5797 35 1 4.9685 5.6039 2.9561 36 1 7.1936 4.7045 2.3324 37 1 7.2631 5.8311 0.9561 38 1 7.1164 7.7504 2.5185 39 1 7.0469 6.6245 3.8954 40 1 9.5410 9.1314 4.9222 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594530323.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:19 Heat of formation + Delta-G solvation = -30.772228 kcal Electronic energy + Delta-G solvation = -20004.394402 eV Core-core repulsion = 16820.930428 eV Total energy + Delta-G solvation = -3183.463975 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.68948 -39.76987 -37.23667 -36.48974 -35.70265 -34.72747 -32.93514 -30.74691 -29.47305 -27.44603 -26.15188 -26.03355 -24.26998 -22.60261 -22.12490 -21.70326 -19.13074 -18.82217 -18.35563 -17.83802 -16.81970 -16.56149 -16.42426 -16.05541 -15.74079 -15.46180 -14.54250 -14.39458 -14.31488 -14.06313 -13.78256 -13.35981 -13.19582 -13.11207 -12.90395 -12.69181 -12.63265 -12.50739 -12.41753 -12.21242 -12.02068 -11.95540 -11.57377 -11.55441 -11.48897 -11.30026 -11.10218 -10.85550 -10.51981 -8.18333 -6.27947 0.04741 1.05170 1.42225 1.43814 1.51751 1.76983 2.29942 2.42940 2.61884 3.09970 3.15754 3.65987 3.79019 3.98537 4.13658 4.18852 4.20133 4.22026 4.32659 4.40096 4.47574 4.62129 4.67512 4.72614 4.74737 4.76724 4.84566 4.96262 4.99134 5.01466 5.18090 5.20469 5.29104 5.43552 5.53001 5.75203 5.87138 5.90247 6.26507 6.87936 7.06889 7.40698 8.92876 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.033291 B = 0.003099 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.868324 B = 9033.871869 C = 9406.635019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.104 4.104 4 C 0.182 3.818 5 H 0.106 0.894 6 O -0.379 6.379 7 C 0.023 3.977 8 C 0.135 3.865 9 N -0.387 5.387 10 O 0.068 5.932 11 C 0.204 3.796 12 C -0.022 4.022 13 C -0.091 4.091 14 C 0.026 3.974 15 C -0.546 4.546 16 H 0.055 0.945 17 C 0.004 3.996 18 N -0.929 5.929 19 Si 0.958 3.042 20 H -0.269 1.269 21 H -0.283 1.283 22 H -0.270 1.270 23 N -0.499 5.499 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.022 0.978 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.007 0.993 39 H 0.004 0.996 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.148 -16.134 -8.098 22.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.143 4.143 4 C 0.122 3.878 5 H 0.123 0.877 6 O -0.296 6.296 7 C -0.073 4.073 8 C -0.139 4.139 9 N -0.097 5.097 10 O 0.011 5.989 11 C -0.015 4.015 12 C -0.061 4.061 13 C -0.130 4.130 14 C -0.011 4.011 15 C -0.584 4.584 16 H 0.074 0.926 17 C -0.194 4.194 18 N -0.569 5.569 19 Si 0.783 3.217 20 H -0.194 1.194 21 H -0.208 1.208 22 H -0.195 1.195 23 N -0.233 5.233 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.124 0.876 33 H 0.041 0.959 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.026 0.974 39 H 0.023 0.977 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.502 -16.539 -8.732 23.666 hybrid contribution 1.431 0.613 0.438 1.618 sum -13.070 -15.926 -8.295 22.209 Atomic orbital electron populations 1.21763 0.94668 1.02492 1.01948 1.21435 0.96651 0.94077 1.03016 1.21682 0.89420 1.00042 1.03133 1.20597 0.95009 0.81554 0.90622 0.87666 1.87985 1.33487 1.74527 1.33575 1.23031 0.83062 0.97201 1.04010 1.27083 1.00621 1.01720 0.84433 1.74607 1.17754 0.93673 1.23652 1.85305 1.58853 1.29926 1.24769 1.29343 0.93692 0.94968 0.83512 1.20508 0.95999 0.93132 0.96449 1.21430 0.91296 0.99894 1.00400 1.18981 0.94440 0.93502 0.94157 1.21638 0.93570 1.15840 1.27318 0.92635 1.25863 1.03477 0.95031 0.95058 1.70050 1.37458 1.19434 1.29933 0.85606 0.79852 0.77951 0.78286 1.19408 1.20795 1.19456 1.71926 1.18625 1.05250 1.27547 0.91426 0.92450 0.92904 0.91318 0.90875 0.89917 0.91647 0.91171 0.87601 0.95895 0.86169 0.86322 0.93069 0.92599 0.97423 0.97737 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 71.98 0.71 -1.15 16 2 C -0.11 -1.65 5.78 30.59 0.18 -1.48 16 3 C -0.10 -2.00 4.90 30.59 0.15 -1.85 16 4 C 0.18 4.22 2.65 29.85 0.08 4.30 16 5 H 0.11 2.13 7.89 -2.39 -0.02 2.11 16 6 O -0.38 -9.00 9.99 -148.98 -1.49 -10.49 16 7 C 0.02 0.44 10.80 113.37 1.22 1.66 16 8 C 0.14 4.04 6.82 138.46 0.94 4.98 16 9 N -0.39 -12.65 12.16 -60.32 -0.73 -13.38 16 10 O 0.07 2.20 11.31 74.85 0.85 3.05 16 11 C 0.20 6.34 7.77 88.38 0.69 7.02 16 12 C -0.02 -0.66 5.84 29.85 0.17 -0.48 16 13 C -0.09 -3.47 5.13 30.59 0.16 -3.32 16 14 C 0.03 1.29 4.97 29.85 0.15 1.43 16 15 C -0.55 -30.06 9.11 25.60 0.23 -29.83 16 16 H 0.06 2.97 7.74 -2.91 -0.02 2.95 16 17 C 0.00 0.22 5.46 84.66 0.46 0.68 16 18 N -0.93 -54.69 13.29 21.45 0.28 -54.41 16 19 Si 0.96 43.46 29.54 68.60 2.03 45.49 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 N -0.50 -15.83 11.55 -303.20 -3.50 -19.33 16 24 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.07 1.05 7.96 -2.39 -0.02 1.03 16 28 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.02 0.52 7.95 -2.39 -0.02 0.50 16 34 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 35 H 0.12 3.30 8.14 -2.38 -0.02 3.28 16 36 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 38 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -64.83 342.14 3.58 -61.24 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: 1.00 Total: 5.84 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: 5.15 Total: -18.01 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -3.95 Total: -87.12 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -0.64 Total: -7.44 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -64.83 3.58 -61.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594530323.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.472 kcal (2) G-P(sol) polarization free energy of solvation -64.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds