Wall clock time and date at job start Mon Mar 30 2020 07:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42893 * 113.99741 * 2 1 4 4 C 1.53002 * 109.47053 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47507 * 305.00359 * 4 3 2 6 6 C 1.53005 * 109.46888 * 65.00216 * 4 3 2 7 7 C 1.53001 * 109.47323 * 184.99908 * 4 3 2 8 8 C 1.50706 * 109.46848 * 175.00120 * 7 4 3 9 9 N 1.29946 * 126.28426 * 270.02363 * 8 7 4 10 10 O 1.21309 * 110.24521 * 179.68915 * 9 8 7 11 11 C 1.33639 * 109.80928 * 0.46841 * 10 9 8 12 12 C 1.50706 * 126.55037 * 179.79972 * 11 10 9 13 13 C 1.52997 * 109.47238 * 269.69219 * 12 11 10 14 14 C 1.52996 * 109.46947 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46946 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00275 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99908 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99697 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99899 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47276 * 59.99363 * 19 17 15 21 21 H 1.48496 * 109.47302 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47261 * 299.99694 * 19 17 15 23 23 N 1.31128 * 106.90120 * 359.54177 * 11 10 9 24 24 H 1.08994 * 109.47525 * 59.99702 * 1 2 3 25 25 H 1.09009 * 109.47257 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47066 * 299.99336 * 1 2 3 27 27 H 1.09002 * 109.47567 * 60.00394 * 3 2 1 28 28 H 1.08994 * 109.47819 * 300.00017 * 3 2 1 29 29 H 1.09000 * 109.46989 * 179.97438 * 6 4 3 30 30 H 1.09000 * 109.46820 * 300.00233 * 6 4 3 31 31 H 1.09003 * 109.46930 * 59.99790 * 6 4 3 32 32 H 1.08996 * 109.46965 * 55.00315 * 7 4 3 33 33 H 1.08999 * 109.47236 * 295.00512 * 7 4 3 34 34 H 1.09001 * 109.46953 * 29.68831 * 12 11 10 35 35 H 1.09000 * 109.47318 * 149.68429 * 12 11 10 36 36 H 1.09001 * 109.46832 * 299.99686 * 13 12 11 37 37 H 1.09004 * 109.47261 * 59.99705 * 13 12 11 38 38 H 1.08992 * 109.47554 * 299.99696 * 14 13 12 39 39 H 1.08996 * 109.47261 * 60.00229 * 14 13 12 40 40 H 0.97007 * 119.99539 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8508 0.5685 0.8427 6 6 3.9962 0.5365 -1.3065 7 6 4.1572 2.5769 0.1263 8 6 5.6537 2.4493 0.2505 9 7 6.3263 2.3303 1.3559 10 8 7.5126 2.2427 1.1181 11 6 7.7163 2.3094 -0.2010 12 6 9.0454 2.2437 -0.9084 13 6 9.6109 3.6568 -1.0636 14 6 10.9605 3.5900 -1.7812 15 6 11.5173 4.9820 -1.9347 16 1 10.9641 5.8295 -1.5577 17 6 12.7330 5.1736 -2.5564 18 7 13.4068 4.1415 -3.0150 19 14 13.4235 6.8989 -2.7460 20 1 13.6063 7.5091 -1.4045 21 1 14.7333 6.8341 -3.4425 22 1 12.4798 7.7251 -3.5410 23 7 6.5383 2.4374 -0.7626 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 5.0828 0.4508 -1.3062 30 1 3.5531 -0.4554 -1.3960 31 1 3.6808 1.1527 -2.1485 32 1 3.7602 3.0735 1.0117 33 1 3.9148 3.1645 -0.7592 34 1 9.7380 1.6373 -0.3247 35 1 8.9112 1.7958 -1.8930 36 1 8.9183 4.2633 -1.6473 37 1 9.7451 4.1047 -0.0789 38 1 11.6529 2.9838 -1.1973 39 1 10.8267 3.1421 -2.7658 40 1 14.2623 4.2763 -3.4521 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594531731.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:23 Heat of formation + Delta-G solvation = -11.419932 kcal Electronic energy + Delta-G solvation = -19695.798045 eV Core-core repulsion = 16513.173249 eV Total energy + Delta-G solvation = -3182.624796 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.38893 -38.67223 -36.60032 -35.53712 -34.32508 -32.84344 -31.28302 -28.31260 -27.77069 -27.47181 -25.79600 -24.24561 -23.17335 -21.67204 -20.48768 -20.13158 -17.81589 -17.43565 -16.63963 -16.37504 -16.26459 -15.63670 -14.91852 -14.54143 -14.45771 -14.33627 -13.69278 -13.54918 -12.87618 -12.60544 -12.54766 -12.35086 -12.07856 -11.91109 -11.63983 -11.48518 -11.24804 -11.19563 -10.96884 -10.86662 -10.82469 -10.77019 -10.60080 -10.02433 -9.83170 -9.82225 -9.38659 -9.13045 -8.38004 -6.03420 -4.05908 1.33695 2.35212 3.06419 3.31924 3.32593 3.37033 3.39739 3.80895 4.13161 4.44069 4.54140 4.64035 4.76218 4.94894 4.96780 5.06333 5.09164 5.20839 5.29350 5.32764 5.36261 5.49087 5.51071 5.65173 5.66455 5.76681 5.89694 5.97833 6.09894 6.13484 6.20988 6.49847 6.63706 6.79294 6.94942 7.60264 7.72206 7.94974 8.34555 8.36571 9.00018 9.58349 11.07771 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.045123 B = 0.002663 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.377836 B =10510.736874 C =10560.396664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.068 3.932 4 C -0.085 4.085 5 H 0.081 0.919 6 C -0.143 4.143 7 C -0.021 4.021 8 C 0.171 3.829 9 N -0.394 5.394 10 O 0.071 5.929 11 C 0.205 3.795 12 C -0.033 4.033 13 C -0.106 4.106 14 C 0.023 3.977 15 C -0.523 4.523 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 N -0.486 5.486 24 H 0.041 0.959 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.233 -7.066 5.765 24.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.009 4.009 4 C -0.104 4.104 5 H 0.099 0.901 6 C -0.200 4.200 7 C -0.060 4.060 8 C -0.102 4.102 9 N -0.104 5.104 10 O 0.014 5.986 11 C -0.015 4.015 12 C -0.072 4.072 13 C -0.145 4.145 14 C -0.014 4.014 15 C -0.561 4.561 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 N -0.220 5.220 24 H 0.060 0.940 25 H 0.104 0.896 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.619 -7.253 6.127 24.531 hybrid contribution 0.385 1.218 -0.137 1.285 sum -22.234 -6.035 5.990 23.804 Atomic orbital electron populations 1.22744 0.80995 1.02791 0.99977 1.87879 1.19638 1.27833 1.95410 1.22531 0.93097 0.84795 1.00445 1.21063 0.93023 0.95631 1.00716 0.90076 1.21785 1.01677 1.00846 0.95689 1.19879 0.83697 0.97918 1.04527 1.25549 0.99536 1.00972 0.84148 1.74586 0.89774 1.21835 1.24155 1.85287 1.20171 1.65515 1.27610 1.29356 0.98448 0.92990 0.80709 1.20650 0.84493 1.02663 0.99412 1.21732 1.00120 0.91114 1.01512 1.19098 0.89312 0.97529 0.95456 1.21161 1.04281 0.92894 1.37776 0.92698 1.25009 0.96971 0.96891 0.95510 1.69945 1.14556 1.29690 1.39150 0.86642 0.78197 0.84765 0.78311 1.20232 1.21270 1.20235 1.71943 0.98457 1.21307 1.30298 0.94012 0.89614 0.94107 0.93088 0.92784 0.92209 0.91977 0.92359 0.89128 0.88413 0.88303 0.87460 0.92359 0.92576 0.96075 0.96081 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.79 10.24 -35.23 -0.36 -4.15 16 3 C 0.07 0.57 5.32 37.16 0.20 0.77 16 4 C -0.08 -0.85 2.62 -90.62 -0.24 -1.09 16 5 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 6 C -0.14 -1.55 8.90 37.16 0.33 -1.22 16 7 C -0.02 -0.22 5.32 -27.88 -0.15 -0.37 16 8 C 0.17 2.48 6.66 -156.37 -1.04 1.44 16 9 N -0.39 -6.23 12.16 30.90 0.38 -5.86 16 10 O 0.07 1.14 11.31 18.11 0.20 1.34 16 11 C 0.20 3.23 7.77 -13.05 -0.10 3.12 16 12 C -0.03 -0.51 5.84 -27.88 -0.16 -0.67 16 13 C -0.11 -2.04 5.13 -26.73 -0.14 -2.18 16 14 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 15 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 16 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 19 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 N -0.49 -7.74 10.88 -9.87 -0.11 -7.85 16 24 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 25 H 0.09 0.45 8.14 -51.92 -0.42 0.03 16 26 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.76 6.84 -51.93 -0.36 0.40 16 30 H 0.06 0.67 7.82 -51.93 -0.41 0.26 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 339.68 15.07 5.12 5.12 Total: -1.00 -30.94 339.68 -6.43 -37.37 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -6.64 Total: -5.20 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -0.74 Total: -11.66 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 1.00 Total: -39.18 kcal Atomic # 8 Polarization: -2.65 SS G_CDS: -0.16 Total: -2.80 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.94 -6.43 -37.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594531731.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.954 kcal (2) G-P(sol) polarization free energy of solvation -30.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds