Wall clock time and date at job start Mon Mar 30 2020 07:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42893 * 113.99741 * 2 1 4 4 C 1.53002 * 109.47053 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47507 * 305.00359 * 4 3 2 6 6 C 1.53005 * 109.46888 * 65.00216 * 4 3 2 7 7 C 1.53001 * 109.47323 * 184.99908 * 4 3 2 8 8 C 1.50706 * 109.46848 * 175.00120 * 7 4 3 9 9 N 1.29946 * 126.28426 * 270.02363 * 8 7 4 10 10 O 1.21309 * 110.24521 * 179.68915 * 9 8 7 11 11 C 1.33639 * 109.80928 * 0.46841 * 10 9 8 12 12 C 1.50706 * 126.55037 * 179.79972 * 11 10 9 13 13 C 1.52997 * 109.47238 * 269.69219 * 12 11 10 14 14 C 1.52996 * 109.46947 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46946 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00275 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99908 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99697 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99899 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47276 * 59.99363 * 19 17 15 21 21 H 1.48496 * 109.47302 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47261 * 299.99694 * 19 17 15 23 23 N 1.31128 * 106.90120 * 359.54177 * 11 10 9 24 24 H 1.08994 * 109.47525 * 59.99702 * 1 2 3 25 25 H 1.09009 * 109.47257 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47066 * 299.99336 * 1 2 3 27 27 H 1.09002 * 109.47567 * 60.00394 * 3 2 1 28 28 H 1.08994 * 109.47819 * 300.00017 * 3 2 1 29 29 H 1.09000 * 109.46989 * 179.97438 * 6 4 3 30 30 H 1.09000 * 109.46820 * 300.00233 * 6 4 3 31 31 H 1.09003 * 109.46930 * 59.99790 * 6 4 3 32 32 H 1.08996 * 109.46965 * 55.00315 * 7 4 3 33 33 H 1.08999 * 109.47236 * 295.00512 * 7 4 3 34 34 H 1.09001 * 109.46953 * 29.68831 * 12 11 10 35 35 H 1.09000 * 109.47318 * 149.68429 * 12 11 10 36 36 H 1.09001 * 109.46832 * 299.99686 * 13 12 11 37 37 H 1.09004 * 109.47261 * 59.99705 * 13 12 11 38 38 H 1.08992 * 109.47554 * 299.99696 * 14 13 12 39 39 H 1.08996 * 109.47261 * 60.00229 * 14 13 12 40 40 H 0.97007 * 119.99539 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8508 0.5685 0.8427 6 6 3.9962 0.5365 -1.3065 7 6 4.1572 2.5769 0.1263 8 6 5.6537 2.4493 0.2505 9 7 6.3263 2.3303 1.3559 10 8 7.5126 2.2427 1.1181 11 6 7.7163 2.3094 -0.2010 12 6 9.0454 2.2437 -0.9084 13 6 9.6109 3.6568 -1.0636 14 6 10.9605 3.5900 -1.7812 15 6 11.5173 4.9820 -1.9347 16 1 10.9641 5.8295 -1.5577 17 6 12.7330 5.1736 -2.5564 18 7 13.4068 4.1415 -3.0150 19 14 13.4235 6.8989 -2.7460 20 1 13.6063 7.5091 -1.4045 21 1 14.7333 6.8341 -3.4425 22 1 12.4798 7.7251 -3.5410 23 7 6.5383 2.4374 -0.7626 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 5.0828 0.4508 -1.3062 30 1 3.5531 -0.4554 -1.3960 31 1 3.6808 1.1527 -2.1485 32 1 3.7602 3.0735 1.0117 33 1 3.9148 3.1645 -0.7592 34 1 9.7380 1.6373 -0.3247 35 1 8.9112 1.7958 -1.8930 36 1 8.9183 4.2633 -1.6473 37 1 9.7451 4.1047 -0.0789 38 1 11.6529 2.9838 -1.1973 39 1 10.8267 3.1421 -2.7658 40 1 14.2623 4.2763 -3.4521 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594531731.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:23 Heat of formation + Delta-G solvation = -31.011393 kcal Electronic energy + Delta-G solvation = -19696.647595 eV Core-core repulsion = 16513.173249 eV Total energy + Delta-G solvation = -3183.474346 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -46.58965 -39.35721 -37.58061 -36.97075 -35.56806 -34.55473 -32.81267 -29.57830 -28.99659 -28.23210 -26.44011 -25.99852 -24.42455 -22.90797 -22.01715 -21.12202 -19.03749 -18.68568 -18.26656 -17.36829 -16.95486 -16.58751 -16.34525 -16.07492 -15.71251 -15.30021 -14.70199 -14.42925 -14.35485 -14.07686 -13.75487 -13.46346 -13.21256 -13.03964 -12.85494 -12.68080 -12.60517 -12.47384 -12.38834 -12.14835 -12.06415 -11.92442 -11.68667 -11.54473 -11.45567 -11.27089 -10.76691 -10.60375 -10.50935 -8.17235 -6.26805 0.11219 1.19019 1.42984 1.44764 1.52663 1.83024 2.43551 2.52455 2.89355 3.09845 3.16694 3.74033 3.83127 4.00481 4.06644 4.18831 4.23077 4.36195 4.45068 4.46976 4.51836 4.57733 4.65426 4.72240 4.78315 4.85523 4.87439 4.91563 4.98073 5.03624 5.05856 5.16225 5.20453 5.31641 5.54425 5.76671 5.88421 6.23677 6.27649 6.89133 7.14090 7.41680 8.93892 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.045123 B = 0.002663 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.377836 B =10510.736874 C =10560.396664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.070 3.930 4 C -0.079 4.079 5 H 0.064 0.936 6 C -0.138 4.138 7 C -0.021 4.021 8 C 0.175 3.825 9 N -0.409 5.409 10 O 0.062 5.938 11 C 0.203 3.797 12 C -0.022 4.022 13 C -0.091 4.091 14 C 0.026 3.974 15 C -0.545 4.545 16 H 0.056 0.944 17 C 0.002 3.998 18 N -0.929 5.929 19 Si 0.959 3.041 20 H -0.269 1.269 21 H -0.283 1.283 22 H -0.269 1.269 23 N -0.498 5.498 24 H 0.051 0.949 25 H 0.093 0.907 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.037 0.963 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.007 0.993 39 H 0.003 0.997 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.764 -6.197 6.030 25.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.006 4.006 4 C -0.098 4.098 5 H 0.083 0.917 6 C -0.196 4.196 7 C -0.060 4.060 8 C -0.098 4.098 9 N -0.121 5.121 10 O 0.008 5.992 11 C -0.017 4.017 12 C -0.061 4.061 13 C -0.129 4.129 14 C -0.012 4.012 15 C -0.583 4.583 16 H 0.074 0.926 17 C -0.196 4.196 18 N -0.569 5.569 19 Si 0.784 3.216 20 H -0.194 1.194 21 H -0.209 1.209 22 H -0.194 1.194 23 N -0.233 5.233 24 H 0.070 0.930 25 H 0.111 0.889 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.025 0.975 39 H 0.021 0.979 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -24.153 -6.384 6.404 25.790 hybrid contribution 0.803 0.902 -0.222 1.228 sum -23.350 -5.482 6.182 24.768 Atomic orbital electron populations 1.22917 0.79394 1.03712 1.00989 1.87835 1.21471 1.28642 1.95643 1.22525 0.91488 0.84705 1.01891 1.20973 0.94562 0.94883 0.99420 0.91705 1.21732 1.00104 1.01089 0.96626 1.20102 0.81164 0.98534 1.06163 1.26232 1.00985 0.99286 0.83326 1.74583 0.89766 1.22895 1.24827 1.85270 1.20507 1.65839 1.27605 1.29270 0.98473 0.93138 0.80792 1.20465 0.84797 1.00461 1.00396 1.21419 0.97398 0.93546 1.00573 1.18987 0.91579 0.95744 0.94842 1.21643 1.04675 0.94386 1.37578 0.92552 1.25888 0.97462 1.00984 0.95248 1.70061 1.14987 1.31850 1.39982 0.85587 0.77521 0.79874 0.78585 1.19379 1.20864 1.19447 1.71967 0.98812 1.21524 1.30967 0.92990 0.88882 0.93053 0.91548 0.91366 0.94409 0.92210 0.91590 0.87195 0.86967 0.86466 0.86616 0.92967 0.92515 0.97509 0.97860 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.43 10.24 -148.98 -1.53 -8.95 16 3 C 0.07 1.02 5.32 71.98 0.38 1.40 16 4 C -0.08 -1.47 2.62 -10.79 -0.03 -1.50 16 5 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 6 C -0.14 -2.89 8.90 71.98 0.64 -2.25 16 7 C -0.02 -0.40 5.32 29.85 0.16 -0.24 16 8 C 0.17 4.86 6.66 138.47 0.92 5.78 16 9 N -0.41 -12.59 12.16 -60.32 -0.73 -13.33 16 10 O 0.06 1.95 11.31 74.86 0.85 2.79 16 11 C 0.20 6.25 7.77 88.38 0.69 6.93 16 12 C -0.02 -0.67 5.84 29.85 0.17 -0.50 16 13 C -0.09 -3.46 5.13 30.59 0.16 -3.30 16 14 C 0.03 1.26 4.97 29.85 0.15 1.41 16 15 C -0.54 -30.12 9.11 25.60 0.23 -29.89 16 16 H 0.06 3.02 7.74 -2.91 -0.02 3.00 16 17 C 0.00 0.13 5.46 84.66 0.46 0.59 16 18 N -0.93 -54.94 13.29 21.45 0.28 -54.66 16 19 Si 0.96 43.63 29.54 68.60 2.03 45.65 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 23 N -0.50 -15.41 10.88 -303.20 -3.30 -18.71 16 24 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 26 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 27 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 29 H 0.04 0.94 6.84 -2.39 -0.02 0.93 16 30 H 0.06 1.25 7.82 -2.39 -0.02 1.23 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 35 H 0.12 3.31 8.14 -2.39 -0.02 3.29 16 36 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 38 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 40 H 0.26 14.74 8.31 -92.70 -0.77 13.97 16 Total: -1.00 -65.77 339.68 3.79 -61.98 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: 1.00 Total: 5.25 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: 5.19 Total: -20.03 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -3.75 Total: -86.70 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.68 Total: -6.16 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -65.77 3.79 -61.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594531731.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.973 kcal (2) G-P(sol) polarization free energy of solvation -65.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds