Wall clock time and date at job start Mon Mar 30 2020 07:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46815 * 2 1 4 4 C 1.53002 * 109.47323 * 304.99480 * 3 2 1 5 5 O 1.42894 * 109.47593 * 64.99853 * 3 2 1 6 6 C 1.42903 * 114.00001 * 59.99493 * 5 3 2 7 7 C 1.50708 * 109.46637 * 184.99813 * 3 2 1 8 8 N 1.29939 * 126.28744 * 5.02547 * 7 3 2 9 9 O 1.21301 * 110.24820 * 179.68540 * 8 7 3 10 10 C 1.33635 * 109.81228 * 0.46466 * 9 8 7 11 11 C 1.50706 * 126.55435 * 179.80380 * 10 9 8 12 12 C 1.53000 * 109.47116 * 269.68798 * 11 10 9 13 13 C 1.52996 * 109.47210 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47094 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00222 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99602 * 180.02562 * 14 13 12 17 17 N 1.31506 * 120.00269 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99446 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47415 * 90.00153 * 18 16 14 20 20 H 1.48499 * 109.46831 * 209.99978 * 18 16 14 21 21 H 1.48497 * 109.47075 * 329.99663 * 18 16 14 22 22 N 1.31133 * 106.89680 * 359.54056 * 10 9 8 23 23 H 1.09004 * 109.47433 * 60.00324 * 1 2 3 24 24 H 1.08997 * 109.47348 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47691 * 300.00585 * 1 2 3 26 26 H 1.08998 * 109.47062 * 239.99524 * 2 1 3 27 27 H 1.08999 * 109.46758 * 119.99481 * 2 1 3 28 28 H 1.09007 * 109.46765 * 300.00594 * 4 3 2 29 29 H 1.08996 * 109.46969 * 60.00062 * 4 3 2 30 30 H 1.08997 * 109.47235 * 180.02562 * 4 3 2 31 31 H 1.09004 * 109.47205 * 179.97438 * 6 5 3 32 32 H 1.08993 * 109.47394 * 300.00296 * 6 5 3 33 33 H 1.09003 * 109.47000 * 60.00723 * 6 5 3 34 34 H 1.09000 * 109.46646 * 29.68211 * 11 10 9 35 35 H 1.09000 * 109.47248 * 149.68929 * 11 10 9 36 36 H 1.09000 * 109.47214 * 300.00167 * 12 11 10 37 37 H 1.09008 * 109.47142 * 59.99333 * 12 11 10 38 38 H 1.08997 * 109.47037 * 300.00424 * 13 12 11 39 39 H 1.09000 * 109.46839 * 60.00324 * 13 12 11 40 40 H 0.96998 * 119.99885 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4299 2.1991 -1.1817 5 8 1.6619 2.0815 1.2209 6 6 2.1823 1.4503 2.3927 7 6 3.5419 1.4443 -0.1238 8 7 4.2995 0.4049 -0.3087 9 8 5.4637 0.7399 -0.3717 10 6 5.5630 2.0637 -0.2185 11 6 6.8326 2.8756 -0.2284 12 6 7.3806 2.9827 1.1961 13 6 8.6698 3.8064 1.1860 14 6 9.2092 3.9124 2.5892 15 1 8.6851 3.4393 3.4064 16 6 10.3718 4.6136 2.8297 17 7 11.0103 5.1894 1.8345 18 14 11.0407 4.7444 4.5689 19 1 11.9636 3.6109 4.8309 20 1 11.7750 6.0260 4.7217 21 1 9.9153 4.7002 5.5367 22 7 4.3442 2.5220 -0.0638 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3635 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.7184 1.7117 -2.1131 29 1 0.3437 2.1978 -1.0922 30 1 1.7936 3.2267 -1.1820 31 1 1.8507 1.9951 3.2766 32 1 1.8219 0.4228 2.4424 33 1 3.2716 1.4518 2.3528 34 1 7.5705 2.3883 -0.8658 35 1 6.6227 3.8737 -0.6129 36 1 6.6427 3.4698 1.8335 37 1 7.5905 1.9846 1.5807 38 1 9.4075 3.3189 0.5486 39 1 8.4602 4.8045 0.8014 40 1 11.8284 5.6823 2.0037 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594531783.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:08 Heat of formation + Delta-G solvation = -0.338320 kcal Electronic energy + Delta-G solvation = -20618.994607 eV Core-core repulsion = 17436.850346 eV Total energy + Delta-G solvation = -3182.144261 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.47528 -39.44844 -35.81554 -35.04723 -34.09714 -32.81464 -31.23642 -30.02228 -27.82017 -26.57225 -25.83103 -24.20151 -23.28605 -22.23619 -20.47034 -19.84142 -17.94857 -17.71216 -16.44538 -16.27305 -16.04892 -15.61819 -14.76544 -14.63423 -14.46144 -13.98856 -13.55944 -12.94333 -12.75958 -12.62318 -12.54865 -12.25780 -12.11156 -12.09158 -11.76136 -11.49906 -11.45858 -11.20556 -11.07540 -10.90685 -10.87135 -10.77017 -10.58867 -9.96695 -9.91412 -9.85232 -9.41660 -9.13849 -8.39393 -6.04608 -4.07116 1.25480 2.28418 2.99796 3.30353 3.36796 3.37415 3.40467 3.57305 4.09364 4.43063 4.54238 4.57328 4.92070 5.04891 5.14036 5.21376 5.27057 5.31798 5.33360 5.39813 5.47675 5.55336 5.60867 5.62200 5.67518 5.68942 5.77104 5.93542 6.04306 6.05959 6.11824 6.47127 6.61437 6.87964 6.92994 7.58999 7.70661 7.93799 8.27114 8.35317 8.98996 9.57374 11.06698 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.033063 B = 0.003509 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.668096 B = 7978.696908 C = 8357.656176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C 0.212 3.788 4 C -0.136 4.136 5 O -0.356 6.356 6 C 0.026 3.974 7 C 0.138 3.862 8 N -0.384 5.384 9 O 0.073 5.927 10 C 0.202 3.798 11 C -0.033 4.033 12 C -0.106 4.106 13 C 0.023 3.977 14 C -0.522 4.522 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 N -0.474 5.474 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.046 0.954 33 H 0.039 0.961 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.731 -9.040 -5.649 21.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.183 4.183 3 C 0.171 3.829 4 C -0.194 4.194 5 O -0.273 6.273 6 C -0.070 4.070 7 C -0.136 4.136 8 N -0.094 5.094 9 O 0.015 5.985 10 C -0.017 4.017 11 C -0.072 4.072 12 C -0.145 4.145 13 C -0.014 4.014 14 C -0.561 4.561 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.720 3.280 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.199 1.199 22 N -0.207 5.207 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.111 0.889 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.118 0.882 35 H 0.126 0.874 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.039 0.961 39 H 0.040 0.960 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.349 -9.256 -5.680 22.188 hybrid contribution 0.975 -0.112 1.044 1.433 sum -18.374 -9.369 -4.636 21.139 Atomic orbital electron populations 1.21777 0.94127 1.01888 1.02795 1.22056 0.97441 0.94901 1.03913 1.19697 0.81670 0.94036 0.87530 1.21809 1.01785 1.01385 0.94426 1.88028 1.72500 1.53984 1.12825 1.22815 0.98450 0.97894 0.87837 1.26466 1.00629 0.84507 1.01969 1.74587 0.89731 1.23897 1.21182 1.85283 1.22104 1.26105 1.65008 1.29469 0.97597 0.81728 0.92938 1.20664 0.86266 0.97577 1.02682 1.21737 1.00243 1.01637 0.90869 1.19100 0.89976 0.94767 0.97537 1.21193 1.08286 1.33058 0.93535 0.92657 1.25002 0.96842 0.95459 0.97037 1.69948 1.17762 1.34735 1.30912 0.86587 0.79081 0.77463 0.84852 1.20635 1.21175 1.19868 1.71942 0.99462 1.28721 1.20546 0.91938 0.92377 0.91894 0.90213 0.90957 0.90997 0.90099 0.90587 0.88931 0.93516 0.94258 0.88247 0.87385 0.92361 0.92623 0.96077 0.96050 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.32 37.16 0.35 -0.84 16 2 C -0.14 -1.49 4.33 -26.73 -0.12 -1.61 16 3 C 0.21 2.64 0.80 -91.77 -0.07 2.57 16 4 C -0.14 -1.43 8.34 37.16 0.31 -1.12 16 5 O -0.36 -4.76 9.87 -35.23 -0.35 -5.10 16 6 C 0.03 0.32 10.31 101.05 1.04 1.36 16 7 C 0.14 2.09 5.29 -156.38 -0.83 1.27 16 8 N -0.38 -6.00 11.41 30.89 0.35 -5.65 16 9 O 0.07 1.17 11.31 18.12 0.20 1.37 16 10 C 0.20 3.23 7.77 -13.05 -0.10 3.13 16 11 C -0.03 -0.51 5.84 -27.88 -0.16 -0.67 16 12 C -0.11 -2.05 5.13 -26.73 -0.14 -2.19 16 13 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 14 C -0.52 -14.40 9.11 -34.44 -0.31 -14.72 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 18 Si 0.89 21.37 29.54 -169.99 -5.02 16.34 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 N -0.47 -7.93 11.55 -9.87 -0.11 -8.04 16 23 H 0.06 0.44 6.35 -51.93 -0.33 0.11 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.52 7.82 -51.93 -0.41 0.12 16 26 H 0.08 0.83 8.03 -51.93 -0.42 0.41 16 27 H 0.07 0.78 6.29 -51.93 -0.33 0.45 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.69 6.34 -51.93 -0.33 0.36 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.05 0.48 6.31 -51.93 -0.33 0.15 16 33 H 0.04 0.55 7.15 -51.93 -0.37 0.18 16 34 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.05 1.06 8.14 -51.92 -0.42 0.64 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 330.72 15.07 4.98 4.98 Total: -1.00 -30.65 330.72 -5.75 -36.40 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -6.28 Total: -3.94 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -0.27 Total: -10.87 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.97 Total: -39.19 kcal Atomic # 8 Polarization: -3.59 SS G_CDS: -0.14 Total: -3.73 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.65 -5.75 -36.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594531783.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.059 kcal (2) G-P(sol) polarization free energy of solvation -30.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds