Wall clock time and date at job start Mon Mar 30 2020 07:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46815 * 2 1 4 4 C 1.53002 * 109.47323 * 304.99480 * 3 2 1 5 5 O 1.42894 * 109.47593 * 64.99853 * 3 2 1 6 6 C 1.42903 * 114.00001 * 59.99493 * 5 3 2 7 7 C 1.50708 * 109.46637 * 184.99813 * 3 2 1 8 8 N 1.29939 * 126.28744 * 5.02547 * 7 3 2 9 9 O 1.21301 * 110.24820 * 179.68540 * 8 7 3 10 10 C 1.33635 * 109.81228 * 0.46466 * 9 8 7 11 11 C 1.50706 * 126.55435 * 179.80380 * 10 9 8 12 12 C 1.53000 * 109.47116 * 269.68798 * 11 10 9 13 13 C 1.52996 * 109.47210 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47094 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00222 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99602 * 180.02562 * 14 13 12 17 17 N 1.31506 * 120.00269 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99446 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47415 * 90.00153 * 18 16 14 20 20 H 1.48499 * 109.46831 * 209.99978 * 18 16 14 21 21 H 1.48497 * 109.47075 * 329.99663 * 18 16 14 22 22 N 1.31133 * 106.89680 * 359.54056 * 10 9 8 23 23 H 1.09004 * 109.47433 * 60.00324 * 1 2 3 24 24 H 1.08997 * 109.47348 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47691 * 300.00585 * 1 2 3 26 26 H 1.08998 * 109.47062 * 239.99524 * 2 1 3 27 27 H 1.08999 * 109.46758 * 119.99481 * 2 1 3 28 28 H 1.09007 * 109.46765 * 300.00594 * 4 3 2 29 29 H 1.08996 * 109.46969 * 60.00062 * 4 3 2 30 30 H 1.08997 * 109.47235 * 180.02562 * 4 3 2 31 31 H 1.09004 * 109.47205 * 179.97438 * 6 5 3 32 32 H 1.08993 * 109.47394 * 300.00296 * 6 5 3 33 33 H 1.09003 * 109.47000 * 60.00723 * 6 5 3 34 34 H 1.09000 * 109.46646 * 29.68211 * 11 10 9 35 35 H 1.09000 * 109.47248 * 149.68929 * 11 10 9 36 36 H 1.09000 * 109.47214 * 300.00167 * 12 11 10 37 37 H 1.09008 * 109.47142 * 59.99333 * 12 11 10 38 38 H 1.08997 * 109.47037 * 300.00424 * 13 12 11 39 39 H 1.09000 * 109.46839 * 60.00324 * 13 12 11 40 40 H 0.96998 * 119.99885 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4299 2.1991 -1.1817 5 8 1.6619 2.0815 1.2209 6 6 2.1823 1.4503 2.3927 7 6 3.5419 1.4443 -0.1238 8 7 4.2995 0.4049 -0.3087 9 8 5.4637 0.7399 -0.3717 10 6 5.5630 2.0637 -0.2185 11 6 6.8326 2.8756 -0.2284 12 6 7.3806 2.9827 1.1961 13 6 8.6698 3.8064 1.1860 14 6 9.2092 3.9124 2.5892 15 1 8.6851 3.4393 3.4064 16 6 10.3718 4.6136 2.8297 17 7 11.0103 5.1894 1.8345 18 14 11.0407 4.7444 4.5689 19 1 11.9636 3.6109 4.8309 20 1 11.7750 6.0260 4.7217 21 1 9.9153 4.7002 5.5367 22 7 4.3442 2.5220 -0.0638 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3635 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.7184 1.7117 -2.1131 29 1 0.3437 2.1978 -1.0922 30 1 1.7936 3.2267 -1.1820 31 1 1.8507 1.9951 3.2766 32 1 1.8219 0.4228 2.4424 33 1 3.2716 1.4518 2.3528 34 1 7.5705 2.3883 -0.8658 35 1 6.6227 3.8737 -0.6129 36 1 6.6427 3.4698 1.8335 37 1 7.5905 1.9846 1.5807 38 1 9.4075 3.3189 0.5486 39 1 8.4602 4.8045 0.8014 40 1 11.8284 5.6823 2.0037 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594531783.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:08 Heat of formation + Delta-G solvation = -20.444727 kcal Electronic energy + Delta-G solvation = -20619.866486 eV Core-core repulsion = 17436.850346 eV Total energy + Delta-G solvation = -3183.016141 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.70351 -40.40273 -37.20643 -36.41862 -35.22279 -34.49375 -32.76367 -30.84193 -29.53202 -27.51978 -26.80084 -25.96768 -24.34892 -23.53105 -22.14765 -20.86100 -19.18627 -18.92919 -18.37060 -17.41969 -17.03152 -16.58476 -16.52300 -16.06448 -15.63364 -15.35015 -14.40105 -14.32944 -14.10797 -13.90529 -13.66674 -13.55860 -13.13233 -12.99941 -12.96127 -12.83943 -12.65951 -12.62336 -12.50083 -12.44070 -12.24687 -11.90306 -11.79009 -11.58561 -11.50930 -11.30582 -10.93836 -10.84490 -10.52913 -8.18961 -6.28589 0.00938 1.06532 1.41781 1.42192 1.53049 1.73970 2.34937 2.42757 2.56569 2.98048 3.15203 3.61151 3.70358 3.92211 4.15717 4.18858 4.20420 4.25272 4.29535 4.35310 4.48360 4.58196 4.60955 4.68691 4.76008 4.77143 4.88435 4.94276 4.97476 5.00240 5.03245 5.16799 5.20012 5.37539 5.52355 5.74135 5.86375 5.93090 6.25869 6.87329 7.03878 7.40170 8.92502 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.033063 B = 0.003509 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.668096 B = 7978.696908 C = 8357.656176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.204 3.796 4 C -0.134 4.134 5 O -0.368 6.368 6 C 0.026 3.974 7 C 0.139 3.861 8 N -0.389 5.389 9 O 0.069 5.931 10 C 0.203 3.797 11 C -0.022 4.022 12 C -0.091 4.091 13 C 0.027 3.973 14 C -0.545 4.545 15 H 0.055 0.945 16 C 0.004 3.996 17 N -0.929 5.929 18 Si 0.959 3.041 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.267 1.267 22 N -0.494 5.494 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.012 0.988 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.048 0.952 37 H 0.057 0.943 38 H 0.008 0.992 39 H 0.003 0.997 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.006 -9.808 -5.366 22.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C 0.162 3.838 4 C -0.192 4.192 5 O -0.285 6.285 6 C -0.070 4.070 7 C -0.134 4.134 8 N -0.101 5.101 9 O 0.012 5.988 10 C -0.016 4.016 11 C -0.061 4.061 12 C -0.130 4.130 13 C -0.011 4.011 14 C -0.583 4.583 15 H 0.073 0.927 16 C -0.194 4.194 17 N -0.569 5.569 18 Si 0.784 3.216 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.192 1.192 22 N -0.227 5.227 23 H 0.092 0.908 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.097 0.903 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.122 0.878 30 H 0.079 0.921 31 H 0.126 0.874 32 H 0.082 0.918 33 H 0.031 0.969 34 H 0.139 0.861 35 H 0.134 0.866 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.027 0.973 39 H 0.021 0.979 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.626 -10.037 -5.398 23.565 hybrid contribution 1.346 0.119 0.945 1.649 sum -19.280 -9.919 -4.452 22.134 Atomic orbital electron populations 1.21766 0.92113 1.02990 1.03228 1.22034 0.99080 0.93167 1.03501 1.20100 0.80131 0.95698 0.87874 1.21849 1.03062 1.00216 0.94037 1.88013 1.72384 1.54709 1.13359 1.22890 0.96751 0.99280 0.88118 1.27041 1.01818 0.83797 1.00785 1.74577 0.89663 1.24084 1.21732 1.85270 1.22386 1.25953 1.65170 1.29377 0.97492 0.81832 0.92942 1.20496 0.86657 0.98453 1.00467 1.21423 0.97705 1.00488 0.93348 1.18981 0.91856 0.94461 0.95762 1.21660 1.08649 1.32962 0.95034 0.92661 1.25868 0.97244 0.95130 1.01190 1.70058 1.18273 1.35510 1.33050 0.85540 0.78523 0.77664 0.79898 1.19777 1.20726 1.19166 1.71952 1.00038 1.29710 1.21015 0.90782 0.90976 0.92158 0.90272 0.91707 0.90013 0.87845 0.92128 0.87357 0.91786 0.96941 0.86051 0.86599 0.93342 0.92468 0.97325 0.97870 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.32 71.98 0.67 -1.26 16 2 C -0.14 -2.64 4.33 30.59 0.13 -2.50 16 3 C 0.20 4.81 0.80 -11.54 -0.01 4.80 16 4 C -0.13 -2.59 8.34 71.98 0.60 -1.99 16 5 O -0.37 -9.40 9.87 -148.98 -1.47 -10.87 16 6 C 0.03 0.59 10.31 113.37 1.17 1.76 16 7 C 0.14 4.14 5.29 138.47 0.73 4.87 16 8 N -0.39 -11.89 11.41 -60.36 -0.69 -12.58 16 9 O 0.07 2.14 11.31 74.90 0.85 2.99 16 10 C 0.20 6.36 7.77 88.38 0.69 7.05 16 11 C -0.02 -0.67 5.84 29.85 0.17 -0.49 16 12 C -0.09 -3.51 5.13 30.59 0.16 -3.35 16 13 C 0.03 1.31 4.97 29.85 0.15 1.46 16 14 C -0.55 -30.26 9.11 25.60 0.23 -30.03 16 15 H 0.06 2.99 7.74 -2.91 -0.02 2.97 16 16 C 0.00 0.22 5.46 84.66 0.46 0.68 16 17 N -0.93 -54.96 13.29 21.45 0.28 -54.67 16 18 Si 0.96 43.71 29.54 68.60 2.03 45.74 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 N -0.49 -16.31 11.55 -303.23 -3.50 -19.82 16 23 H 0.07 0.82 6.35 -2.39 -0.02 0.81 16 24 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.86 7.82 -2.38 -0.02 0.84 16 26 H 0.08 1.50 8.03 -2.39 -0.02 1.48 16 27 H 0.06 1.31 6.29 -2.39 -0.02 1.29 16 28 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.10 1.50 6.34 -2.39 -0.02 1.48 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.11 2.08 8.14 -2.38 -0.02 2.06 16 32 H 0.06 1.22 6.31 -2.39 -0.02 1.21 16 33 H 0.01 0.34 7.15 -2.39 -0.02 0.32 16 34 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 35 H 0.12 3.36 8.14 -2.39 -0.02 3.34 16 36 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 38 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 40 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -65.14 330.72 3.67 -61.47 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 1.02 Total: 6.73 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: 5.16 Total: -19.00 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -3.91 Total: -87.07 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.62 Total: -7.88 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -65.14 3.67 -61.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594531783.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.026 kcal (2) G-P(sol) polarization free energy of solvation -65.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds