Wall clock time and date at job start Mon Mar 30 2020 07:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.46623 * 60.00064 * 3 2 1 5 5 O 1.42895 * 109.47000 * 300.00395 * 3 2 1 6 6 C 1.42899 * 113.99963 * 299.99523 * 5 3 2 7 7 C 1.50698 * 109.47184 * 179.97438 * 3 2 1 8 8 N 1.29943 * 126.29099 * 300.02968 * 7 3 2 9 9 O 1.21303 * 110.25184 * 179.97438 * 8 7 3 10 10 C 1.33640 * 109.81094 * 0.02562 * 9 8 7 11 11 C 1.50695 * 126.55195 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47278 * 269.97806 * 11 10 9 13 13 C 1.53009 * 109.47311 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.47074 * 179.97438 * 13 12 11 15 15 H 1.08008 * 120.00375 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00022 * 180.02562 * 14 13 12 17 17 N 1.31518 * 120.00011 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00132 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47261 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.46978 * 119.99542 * 18 16 14 21 21 H 1.48502 * 109.46977 * 239.99609 * 18 16 14 22 22 N 1.31129 * 106.89609 * 359.76441 * 10 9 8 23 23 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 24 24 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 26 26 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 27 27 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 28 28 H 1.09001 * 109.47362 * 60.00551 * 4 3 2 29 29 H 1.09002 * 109.46716 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.47486 * 299.99829 * 4 3 2 31 31 H 1.08995 * 109.47515 * 300.00287 * 6 5 3 32 32 H 1.09002 * 109.46998 * 60.00868 * 6 5 3 33 33 H 1.09010 * 109.46728 * 180.02562 * 6 5 3 34 34 H 1.09007 * 109.47194 * 29.97529 * 11 10 9 35 35 H 1.09005 * 109.47621 * 149.97372 * 11 10 9 36 36 H 1.09004 * 109.46674 * 299.99449 * 12 11 10 37 37 H 1.08997 * 109.47662 * 59.99670 * 12 11 10 38 38 H 1.08995 * 109.46802 * 299.99659 * 13 12 11 39 39 H 1.09004 * 109.46646 * 59.99571 * 13 12 11 40 40 H 0.96994 * 120.00484 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5300 2.1637 1.2493 5 8 1.5636 2.1162 -1.1667 6 6 1.9853 1.5199 -2.3950 7 6 3.5470 1.4426 0.0006 8 7 4.3157 0.9186 0.9078 9 8 5.4816 1.0858 0.6179 10 6 5.5700 1.7532 -0.5366 11 6 6.8373 2.1614 -1.2425 12 6 7.2656 3.5487 -0.7599 13 6 8.5527 3.9629 -1.4762 14 6 8.9742 5.3296 -1.0013 15 1 8.3831 5.8509 -0.2628 16 6 10.1140 5.9151 -1.5103 17 7 10.8337 5.2806 -2.4099 18 14 10.6362 7.6095 -0.9222 19 1 9.6637 8.1055 0.0845 20 1 11.9858 7.5262 -0.3083 21 1 10.6738 8.5439 -2.0757 22 7 4.3433 1.9808 -0.9401 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.8934 1.6499 2.1393 29 1 1.8937 3.1912 1.2495 30 1 0.4399 2.1637 1.2493 31 1 3.0741 1.5215 -2.4448 32 1 1.6207 0.4939 -2.4447 33 1 1.5827 2.0899 -3.2325 34 1 7.6247 1.4407 -1.0214 35 1 6.6616 2.1890 -2.3179 36 1 6.4783 4.2693 -0.9811 37 1 7.4415 3.5211 0.3154 38 1 9.3398 3.2422 -1.2547 39 1 8.3773 3.9904 -2.5516 40 1 11.6357 5.6923 -2.7678 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594531784.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:11 Heat of formation + Delta-G solvation = 3.273647 kcal Electronic energy + Delta-G solvation = -20619.583387 eV Core-core repulsion = 17437.595752 eV Total energy + Delta-G solvation = -3181.987635 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.47317 -39.42957 -35.78488 -34.98534 -34.14057 -32.81082 -31.29728 -29.95697 -27.76704 -26.43338 -25.79007 -24.27842 -23.41216 -22.28008 -20.48925 -19.71188 -17.95237 -17.72521 -16.43026 -16.12282 -16.01663 -15.62837 -14.83343 -14.53925 -14.40120 -13.99875 -13.46535 -13.04605 -12.82400 -12.63303 -12.44179 -12.31968 -12.12639 -12.00413 -11.95328 -11.53449 -11.48997 -11.22677 -11.06532 -10.92228 -10.88473 -10.58823 -10.51939 -9.97645 -9.85767 -9.69562 -9.40653 -9.12410 -8.39629 -6.04733 -4.07092 1.26892 2.27904 2.99551 3.29690 3.36537 3.37541 3.41994 3.58560 4.15829 4.43477 4.46797 4.59633 4.92468 5.02168 5.18879 5.23511 5.31729 5.33323 5.39659 5.46316 5.52130 5.57648 5.60990 5.61230 5.66177 5.71989 5.87467 5.94802 6.00637 6.05003 6.18641 6.47269 6.61628 6.93031 6.96555 7.59046 7.70269 7.93870 8.26805 8.35432 8.99329 9.57539 11.06600 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.034924 B = 0.003389 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.555146 B = 8259.369646 C = 8329.635947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.213 3.787 4 C -0.138 4.138 5 O -0.357 6.357 6 C 0.014 3.986 7 C 0.141 3.859 8 N -0.384 5.384 9 O 0.073 5.927 10 C 0.204 3.796 11 C -0.033 4.033 12 C -0.106 4.106 13 C 0.023 3.977 14 C -0.521 4.521 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 N -0.480 5.480 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.036 0.964 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.077 -11.462 3.376 21.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.183 4.183 3 C 0.171 3.829 4 C -0.196 4.196 5 O -0.274 6.274 6 C -0.082 4.082 7 C -0.132 4.132 8 N -0.094 5.094 9 O 0.016 5.984 10 C -0.015 4.015 11 C -0.072 4.072 12 C -0.145 4.145 13 C -0.014 4.014 14 C -0.560 4.560 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 N -0.213 5.213 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.104 0.896 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.670 -11.534 3.699 22.256 hybrid contribution 0.826 0.737 0.109 1.113 sum -17.844 -10.797 3.808 21.201 Atomic orbital electron populations 1.21742 0.93930 1.01840 1.02914 1.22120 0.97772 0.94935 1.03496 1.19658 0.80939 0.93610 0.88725 1.21851 1.02514 1.01227 0.93980 1.87970 1.72472 1.53942 1.13063 1.23098 1.02201 0.97304 0.85627 1.26573 1.00619 0.97233 0.88824 1.74517 0.89474 1.22296 1.23159 1.85284 1.21942 1.55644 1.35556 1.29493 0.97578 0.90074 0.84397 1.20665 0.86505 1.00708 0.99321 1.21741 1.01002 0.91049 1.00719 1.19106 0.90108 0.96502 0.95683 1.21236 1.08908 1.02098 1.23725 0.92572 1.25007 0.96515 0.97827 0.95030 1.69960 1.16289 1.38017 1.29132 0.86532 0.78493 0.84308 0.78668 1.19723 1.20972 1.20973 1.71915 0.99475 1.22866 1.27081 0.91801 0.92392 0.91939 0.91284 0.90216 0.90414 0.91311 0.90075 0.90770 0.94500 0.89564 0.88260 0.87455 0.92307 0.92550 0.96078 0.96085 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.41 37.16 0.35 -0.82 16 2 C -0.14 -1.46 4.59 -26.73 -0.12 -1.58 16 3 C 0.21 2.65 0.79 -91.77 -0.07 2.58 16 4 C -0.14 -1.49 8.47 37.16 0.31 -1.18 16 5 O -0.36 -4.76 9.60 -35.23 -0.34 -5.10 16 6 C 0.01 0.16 10.20 101.05 1.03 1.19 16 7 C 0.14 2.14 6.06 -156.38 -0.95 1.19 16 8 N -0.38 -6.00 12.16 30.90 0.38 -5.63 16 9 O 0.07 1.16 11.31 18.11 0.20 1.36 16 10 C 0.20 3.20 7.77 -13.06 -0.10 3.10 16 11 C -0.03 -0.50 5.84 -27.89 -0.16 -0.67 16 12 C -0.11 -2.05 5.14 -26.73 -0.14 -2.19 16 13 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 14 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 15 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 18 Si 0.89 21.40 29.54 -169.99 -5.02 16.37 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 N -0.48 -7.82 8.83 -9.87 -0.09 -7.90 16 23 H 0.06 0.54 7.68 -51.93 -0.40 0.14 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 26 H 0.07 0.71 6.54 -51.93 -0.34 0.37 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.71 6.43 -51.93 -0.33 0.38 16 31 H 0.07 1.01 5.38 -51.93 -0.28 0.73 16 32 H 0.04 0.37 6.42 -51.93 -0.33 0.04 16 33 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 34 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 328.34 15.07 4.95 4.95 Total: -1.00 -30.49 328.34 -5.79 -36.28 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -6.21 Total: -3.72 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -0.40 Total: -11.13 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 1.02 Total: -39.01 kcal Atomic # 8 Polarization: -3.60 SS G_CDS: -0.13 Total: -3.74 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.49 -5.79 -36.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594531784.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.555 kcal (2) G-P(sol) polarization free energy of solvation -30.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds