Wall clock time and date at job start Mon Mar 30 2020 07:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.46623 * 60.00064 * 3 2 1 5 5 O 1.42895 * 109.47000 * 300.00395 * 3 2 1 6 6 C 1.42899 * 113.99963 * 299.99523 * 5 3 2 7 7 C 1.50698 * 109.47184 * 179.97438 * 3 2 1 8 8 N 1.29943 * 126.29099 * 300.02968 * 7 3 2 9 9 O 1.21303 * 110.25184 * 179.97438 * 8 7 3 10 10 C 1.33640 * 109.81094 * 0.02562 * 9 8 7 11 11 C 1.50695 * 126.55195 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47278 * 269.97806 * 11 10 9 13 13 C 1.53009 * 109.47311 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.47074 * 179.97438 * 13 12 11 15 15 H 1.08008 * 120.00375 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00022 * 180.02562 * 14 13 12 17 17 N 1.31518 * 120.00011 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00132 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47261 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.46978 * 119.99542 * 18 16 14 21 21 H 1.48502 * 109.46977 * 239.99609 * 18 16 14 22 22 N 1.31129 * 106.89609 * 359.76441 * 10 9 8 23 23 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 24 24 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 26 26 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 27 27 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 28 28 H 1.09001 * 109.47362 * 60.00551 * 4 3 2 29 29 H 1.09002 * 109.46716 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.47486 * 299.99829 * 4 3 2 31 31 H 1.08995 * 109.47515 * 300.00287 * 6 5 3 32 32 H 1.09002 * 109.46998 * 60.00868 * 6 5 3 33 33 H 1.09010 * 109.46728 * 180.02562 * 6 5 3 34 34 H 1.09007 * 109.47194 * 29.97529 * 11 10 9 35 35 H 1.09005 * 109.47621 * 149.97372 * 11 10 9 36 36 H 1.09004 * 109.46674 * 299.99449 * 12 11 10 37 37 H 1.08997 * 109.47662 * 59.99670 * 12 11 10 38 38 H 1.08995 * 109.46802 * 299.99659 * 13 12 11 39 39 H 1.09004 * 109.46646 * 59.99571 * 13 12 11 40 40 H 0.96994 * 120.00484 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5300 2.1637 1.2493 5 8 1.5636 2.1162 -1.1667 6 6 1.9853 1.5199 -2.3950 7 6 3.5470 1.4426 0.0006 8 7 4.3157 0.9186 0.9078 9 8 5.4816 1.0858 0.6179 10 6 5.5700 1.7532 -0.5366 11 6 6.8373 2.1614 -1.2425 12 6 7.2656 3.5487 -0.7599 13 6 8.5527 3.9629 -1.4762 14 6 8.9742 5.3296 -1.0013 15 1 8.3831 5.8509 -0.2628 16 6 10.1140 5.9151 -1.5103 17 7 10.8337 5.2806 -2.4099 18 14 10.6362 7.6095 -0.9222 19 1 9.6637 8.1055 0.0845 20 1 11.9858 7.5262 -0.3083 21 1 10.6738 8.5439 -2.0757 22 7 4.3433 1.9808 -0.9401 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.8934 1.6499 2.1393 29 1 1.8937 3.1912 1.2495 30 1 0.4399 2.1637 1.2493 31 1 3.0741 1.5215 -2.4448 32 1 1.6207 0.4939 -2.4447 33 1 1.5827 2.0899 -3.2325 34 1 7.6247 1.4407 -1.0214 35 1 6.6616 2.1890 -2.3179 36 1 6.4783 4.2693 -0.9811 37 1 7.4415 3.5211 0.3154 38 1 9.3398 3.2422 -1.2547 39 1 8.3773 3.9904 -2.5516 40 1 11.6357 5.6923 -2.7678 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594531784.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:11 Heat of formation + Delta-G solvation = -15.653285 kcal Electronic energy + Delta-G solvation = -20620.404120 eV Core-core repulsion = 17437.595752 eV Total energy + Delta-G solvation = -3182.808368 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -46.68494 -40.37619 -37.17813 -36.32900 -35.26123 -34.48075 -32.76376 -30.84076 -29.46427 -27.35289 -26.70898 -26.03871 -24.53682 -23.50919 -22.15937 -20.73416 -19.15642 -18.94290 -18.38860 -17.23068 -17.00694 -16.58025 -16.49095 -16.07679 -15.51848 -15.35857 -14.40356 -14.25665 -14.03646 -13.96358 -13.77985 -13.52532 -13.10909 -13.07079 -12.99405 -12.83763 -12.72287 -12.65877 -12.51481 -12.38605 -12.24472 -11.87908 -11.59912 -11.57763 -11.47734 -11.27126 -10.90944 -10.64842 -10.53169 -8.19041 -6.28424 0.03663 1.08498 1.40801 1.42181 1.54281 1.75693 2.33964 2.42809 2.57513 3.05352 3.15171 3.61451 3.73995 3.85874 4.15124 4.19321 4.24450 4.33010 4.37257 4.46293 4.55394 4.59716 4.65037 4.71496 4.75552 4.85976 4.91624 4.92221 4.99964 5.00606 5.09452 5.17883 5.18542 5.37385 5.53035 5.74592 5.86793 6.02796 6.26303 6.87712 7.05264 7.40388 8.92568 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.034924 B = 0.003389 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.555146 B = 8259.369646 C = 8329.635947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.205 3.795 4 C -0.136 4.136 5 O -0.370 6.370 6 C 0.012 3.988 7 C 0.140 3.860 8 N -0.391 5.391 9 O 0.068 5.932 10 C 0.203 3.797 11 C -0.022 4.022 12 C -0.091 4.091 13 C 0.027 3.973 14 C -0.544 4.544 15 H 0.055 0.945 16 C 0.004 3.996 17 N -0.929 5.929 18 Si 0.959 3.041 19 H -0.266 1.266 20 H -0.277 1.277 21 H -0.279 1.279 22 N -0.494 5.494 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.048 0.952 37 H 0.056 0.944 38 H 0.008 0.992 39 H 0.003 0.997 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.320 -11.673 3.984 22.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.178 4.178 3 C 0.163 3.837 4 C -0.194 4.194 5 O -0.287 6.287 6 C -0.084 4.084 7 C -0.133 4.133 8 N -0.102 5.102 9 O 0.012 5.988 10 C -0.016 4.016 11 C -0.060 4.060 12 C -0.130 4.130 13 C -0.011 4.011 14 C -0.582 4.582 15 H 0.073 0.927 16 C -0.194 4.194 17 N -0.569 5.569 18 Si 0.784 3.216 19 H -0.191 1.191 20 H -0.203 1.203 21 H -0.204 1.204 22 N -0.228 5.228 23 H 0.078 0.922 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.122 0.878 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.117 0.883 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.027 0.973 39 H 0.022 0.978 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.915 -11.752 4.314 23.523 hybrid contribution 1.185 0.782 -0.095 1.422 sum -18.730 -10.970 4.218 22.113 Atomic orbital electron populations 1.21733 0.92098 1.02968 1.03177 1.22096 0.99244 0.93078 1.03340 1.20032 0.79385 0.95280 0.89041 1.21885 1.03953 1.00080 0.93461 1.87952 1.72410 1.54709 1.13659 1.23152 1.01033 0.98594 0.85594 1.27164 1.01840 0.96239 0.88095 1.74504 0.89423 1.22868 1.23441 1.85270 1.22205 1.55809 1.35512 1.29421 0.97527 0.90228 0.84427 1.20487 0.87100 0.98772 0.99668 1.21426 0.98257 0.93209 1.00129 1.18986 0.92008 0.95077 0.94996 1.21691 1.09142 1.03636 1.23716 0.92716 1.25863 0.96650 1.01759 0.95163 1.70064 1.16817 1.39776 1.30237 0.85495 0.78233 0.79581 0.78326 1.19055 1.20287 1.20445 1.71963 0.99866 1.23196 1.27741 0.92184 0.90856 0.91012 0.91683 0.90121 0.89853 0.92879 0.87796 0.92730 0.92802 0.88300 0.86134 0.86518 0.93297 0.92510 0.97326 0.97819 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.41 71.98 0.68 -1.23 16 2 C -0.14 -2.55 4.59 30.60 0.14 -2.41 16 3 C 0.20 4.83 0.79 -11.54 -0.01 4.82 16 4 C -0.14 -2.75 8.47 71.98 0.61 -2.14 16 5 O -0.37 -9.40 9.60 -148.98 -1.43 -10.83 16 6 C 0.01 0.27 10.20 113.37 1.16 1.43 16 7 C 0.14 4.13 6.06 138.46 0.84 4.97 16 8 N -0.39 -11.89 12.16 -60.32 -0.73 -12.62 16 9 O 0.07 2.09 11.31 74.85 0.85 2.94 16 10 C 0.20 6.25 7.77 88.38 0.69 6.94 16 11 C -0.02 -0.64 5.84 29.85 0.17 -0.47 16 12 C -0.09 -3.51 5.14 30.60 0.16 -3.36 16 13 C 0.03 1.30 4.97 29.85 0.15 1.45 16 14 C -0.54 -30.20 9.11 25.60 0.23 -29.96 16 15 H 0.05 2.98 7.74 -2.91 -0.02 2.95 16 16 C 0.00 0.21 5.46 84.65 0.46 0.67 16 17 N -0.93 -54.84 13.29 21.45 0.28 -54.55 16 18 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 N -0.49 -15.82 8.83 -303.21 -2.68 -18.50 16 23 H 0.06 0.87 7.68 -2.38 -0.02 0.85 16 24 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.07 0.83 6.43 -2.39 -0.02 0.81 16 26 H 0.06 1.23 6.54 -2.39 -0.02 1.22 16 27 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.10 1.58 6.43 -2.39 -0.02 1.57 16 31 H 0.05 1.45 5.38 -2.39 -0.01 1.44 16 32 H 0.05 0.99 6.42 -2.39 -0.02 0.98 16 33 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 34 H 0.12 3.09 8.14 -2.38 -0.02 3.07 16 35 H 0.12 3.28 8.14 -2.38 -0.02 3.26 16 36 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 40 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -64.57 328.34 4.61 -59.96 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 1.02 Total: 7.07 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: 5.28 Total: -19.29 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -3.13 Total: -85.67 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -0.58 Total: -7.89 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -64.57 4.61 -59.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594531784.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.306 kcal (2) G-P(sol) polarization free energy of solvation -64.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds