Wall clock time and date at job start Mon Mar 30 2020 06:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47150 * 2 1 4 4 C 1.50699 * 109.47069 * 239.99937 * 2 1 3 5 5 H 1.08004 * 120.00043 * 240.00165 * 4 2 1 6 6 C 1.37877 * 119.99969 * 60.00095 * 4 2 1 7 7 N 1.31512 * 120.00127 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99837 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46767 * 90.00659 * 8 6 4 10 10 H 1.48502 * 109.46917 * 210.00062 * 8 6 4 11 11 H 1.48494 * 109.47433 * 330.00286 * 8 6 4 12 12 C 1.53003 * 109.46852 * 120.00185 * 2 1 3 13 13 N 1.46500 * 109.47180 * 299.99720 * 12 2 1 14 14 C 1.39134 * 120.00116 * 180.02562 * 13 12 2 15 15 C 1.39112 * 119.67694 * 0.27542 * 14 13 12 16 16 C 1.38312 * 119.11824 * 180.25326 * 15 14 13 17 17 C 1.50699 * 120.75689 * 179.75531 * 16 15 14 18 18 O 1.42903 * 109.47152 * 359.72227 * 17 16 15 19 19 C 1.39037 * 118.48850 * 359.47769 * 16 15 14 20 20 F 1.35103 * 120.36182 * 180.29739 * 19 16 15 21 21 C 1.38220 * 119.28061 * 0.28042 * 19 16 15 22 22 N 1.31992 * 120.81953 * 359.97351 * 21 19 16 23 23 H 1.09004 * 109.47399 * 300.00085 * 1 2 3 24 24 H 1.09006 * 109.47012 * 59.99853 * 1 2 3 25 25 H 1.09005 * 109.47374 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46572 * 179.97438 * 3 2 1 27 27 H 1.08992 * 109.47222 * 299.99884 * 3 2 1 28 28 H 1.08999 * 109.47272 * 60.00377 * 3 2 1 29 29 H 0.96997 * 120.00327 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.46922 * 179.97438 * 12 2 1 31 31 H 1.08996 * 109.47109 * 60.00239 * 12 2 1 32 32 H 0.96998 * 119.99565 * 0.02562 * 13 12 2 33 33 H 1.07989 * 120.44055 * 0.02562 * 15 14 13 34 34 H 1.08997 * 109.47198 * 239.71905 * 17 16 15 35 35 H 1.09008 * 109.47393 * 119.71621 * 17 16 15 36 36 H 0.96700 * 114.00311 * 180.02562 * 18 17 16 37 37 H 1.08003 * 119.58933 * 179.97438 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.3447 -2.1615 -4.4124 10 1 2.4873 -0.1402 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0307 2.4454 14 6 1.8881 -0.5058 3.7091 15 6 2.6934 -1.6338 3.8290 16 6 3.0164 -2.0992 5.0908 17 6 3.8815 -3.3209 5.2634 18 8 4.2438 -3.8334 3.9796 19 6 2.5296 -1.4107 6.1963 20 9 2.8268 -1.8286 7.4462 21 6 1.7387 -0.2938 6.0026 22 7 1.4435 0.1230 4.7855 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 0.7095 1.1618 -3.4844 30 1 3.1299 -0.7217 1.2490 31 1 1.6766 -1.7489 1.2492 32 1 0.9937 0.7578 2.3564 33 1 3.0584 -2.1415 2.9485 34 1 3.3299 -4.0816 5.8159 35 1 4.7827 -3.0531 5.8151 36 1 4.8019 -4.6224 4.0141 37 1 1.3576 0.2446 6.8578 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596265691.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:01 Heat of formation + Delta-G solvation = -61.945779 kcal Electronic energy + Delta-G solvation = -20388.522907 eV Core-core repulsion = 17080.246841 eV Total energy + Delta-G solvation = -3308.276066 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.133 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.67903 -40.04314 -37.26447 -36.79572 -33.98123 -32.65825 -31.22015 -28.61537 -26.94763 -25.72615 -25.63431 -24.80621 -22.71743 -21.47931 -18.87873 -17.99270 -17.52219 -16.88810 -16.26657 -15.86913 -15.78730 -14.91559 -14.74700 -14.25638 -14.16262 -14.13926 -13.96809 -13.26096 -12.88716 -12.88141 -12.32190 -12.07328 -11.73783 -11.48588 -11.20620 -10.94779 -10.71380 -10.66418 -10.45571 -10.20598 -9.79962 -9.46549 -9.41023 -9.34826 -9.30786 -8.81737 -8.41207 -7.23688 -6.04353 -4.15370 1.29040 1.38266 3.26230 3.33584 3.35934 3.59589 3.88004 3.92695 4.37361 4.41476 4.67641 4.84213 5.02793 5.20778 5.22370 5.26192 5.49601 5.80202 5.92950 6.08563 6.18574 6.32118 6.45411 6.67346 6.76137 6.85080 6.95700 6.99582 7.23734 7.41086 7.44391 7.54275 7.66587 7.98796 7.98926 8.11032 8.32610 8.43001 8.84846 9.50665 10.96995 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.027813 B = 0.004504 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.465960 B = 6215.424857 C = 7025.532746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.058 3.942 3 C -0.131 4.131 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.134 3.866 13 N -0.701 5.701 14 C 0.403 3.597 15 C -0.191 4.191 16 C -0.041 4.041 17 C 0.121 3.879 18 O -0.562 6.562 19 C -0.041 4.041 20 F -0.144 7.144 21 C 0.132 3.868 22 N -0.532 5.532 23 H 0.008 0.992 24 H 0.085 0.915 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.086 0.914 28 H 0.008 0.992 29 H 0.260 0.740 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.406 0.594 33 H 0.152 0.848 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.384 0.616 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.976 -5.605 14.127 15.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.058 3.942 3 C -0.189 4.189 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.011 3.989 13 N -0.330 5.330 14 C 0.164 3.836 15 C -0.217 4.217 16 C -0.050 4.050 17 C 0.043 3.957 18 O -0.368 6.368 19 C -0.066 4.066 20 F -0.123 7.123 21 C -0.028 4.028 22 N -0.250 5.250 23 H 0.027 0.973 24 H 0.104 0.896 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.104 0.896 28 H 0.027 0.973 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.243 0.757 33 H 0.169 0.831 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.231 0.769 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.103 -4.361 13.458 14.483 hybrid contribution 0.991 -1.423 -0.289 1.758 sum 4.093 -5.784 13.169 14.955 Atomic orbital electron populations 1.21832 0.97627 0.99194 1.00272 1.18327 0.92924 0.92832 0.90139 1.21827 0.98522 0.98291 1.00272 1.20947 1.31710 1.12148 0.89832 0.92419 1.24880 0.94829 0.94882 0.98873 1.69807 1.36525 1.22610 1.23289 0.86567 0.79276 0.79382 0.82612 1.20706 1.21258 1.19905 1.21881 0.97823 0.95757 0.83421 1.45185 1.54243 1.32243 1.01371 1.18652 0.89308 0.89014 0.86585 1.21221 1.03588 0.98727 0.98150 1.19838 0.96826 0.95848 0.92447 1.20712 0.96763 0.92746 0.85444 1.86515 1.73278 1.48837 1.28135 1.18020 1.08614 1.00810 0.79157 1.91420 1.92573 1.90086 1.38260 1.22337 0.93558 0.92209 0.94687 1.67258 1.27219 1.33065 0.97506 0.97281 0.89591 0.95459 0.95455 0.89582 0.97287 0.92948 0.92775 0.92782 0.75668 0.83081 0.91652 0.91651 0.76851 0.82087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 8.08 37.16 0.30 -2.70 16 2 C 0.06 1.34 0.50 -155.66 -0.08 1.26 16 3 C -0.13 -2.99 8.08 37.16 0.30 -2.69 16 4 C -0.51 -12.95 8.01 -34.44 -0.28 -13.22 16 5 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.88 -23.44 9.35 55.43 0.52 -22.92 16 8 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 12 C 0.13 2.68 3.72 -4.04 -0.02 2.66 16 13 N -0.70 -12.90 5.14 -60.40 -0.31 -13.21 16 14 C 0.40 7.06 7.65 -154.94 -1.19 5.87 16 15 C -0.19 -3.14 8.66 -39.23 -0.34 -3.48 16 16 C -0.04 -0.59 5.92 -104.30 -0.62 -1.21 16 17 C 0.12 1.33 7.11 36.01 0.26 1.59 16 18 O -0.56 -6.33 12.24 -35.23 -0.43 -6.76 16 19 C -0.04 -0.57 7.28 -39.29 -0.29 -0.85 16 20 F -0.14 -1.87 16.88 2.25 0.04 -1.83 16 21 C 0.13 1.86 11.16 -17.49 -0.20 1.67 16 22 N -0.53 -8.90 10.39 -12.37 -0.13 -9.03 16 23 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 24 H 0.09 2.16 6.07 -51.93 -0.32 1.85 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.09 2.17 6.07 -51.93 -0.32 1.85 16 28 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 29 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 30 H 0.05 1.09 7.92 -51.93 -0.41 0.67 16 31 H 0.05 1.08 7.94 -51.93 -0.41 0.67 16 32 H 0.41 7.53 6.29 -40.82 -0.26 7.28 16 33 H 0.15 2.56 5.76 -52.49 -0.30 2.26 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 36 H 0.38 2.27 9.12 45.56 0.42 2.69 16 37 H 0.16 1.76 8.06 -52.48 -0.42 1.33 16 LS Contribution 305.75 15.07 4.61 4.61 Total: -1.00 -27.91 305.75 -6.92 -34.83 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -3.96 Total: 8.44 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -2.23 Total: -9.46 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 0.08 Total: -45.15 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.43 Total: -6.76 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.91 -6.92 -34.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596265691.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.120 kcal (2) G-P(sol) polarization free energy of solvation -27.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds