Wall clock time and date at job start Mon Mar 30 2020 07:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47046 * 2 1 4 4 C 1.50703 * 109.47140 * 239.99722 * 2 1 3 5 5 H 1.07992 * 120.00155 * 240.00286 * 4 2 1 6 6 C 1.37877 * 119.99574 * 59.99947 * 4 2 1 7 7 N 1.31514 * 120.00242 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99658 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46907 * 60.00512 * 8 6 4 10 10 H 1.48501 * 109.46820 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47074 * 299.99965 * 8 6 4 12 12 C 1.53002 * 109.46910 * 119.99809 * 2 1 3 13 13 S 1.81401 * 109.47275 * 300.00028 * 12 2 1 14 14 C 1.81394 * 102.99789 * 180.02562 * 13 12 2 15 15 C 1.53006 * 109.46954 * 179.97438 * 14 13 12 16 16 H 1.09002 * 109.61619 * 54.99784 * 15 14 13 17 17 C 1.53297 * 109.61448 * 294.64055 * 15 14 13 18 18 C 1.52881 * 108.57900 * 165.64904 * 17 15 14 19 19 C 1.52704 * 110.15661 * 54.51953 * 18 17 15 20 20 H 1.08993 * 115.39085 * 127.17458 * 19 18 17 21 21 C 1.53650 * 116.02875 * 269.79902 * 19 18 17 22 22 C 1.52064 * 120.52167 * 338.53005 * 19 18 17 23 23 H 1.08999 * 115.93025 * 149.26134 * 22 19 18 24 24 C 1.52071 * 120.02227 * 5.28796 * 22 19 18 25 25 H 1.08999 * 109.46876 * 300.00716 * 1 2 3 26 26 H 1.08996 * 109.46825 * 60.00050 * 1 2 3 27 27 H 1.08996 * 109.47143 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46769 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47268 * 299.99679 * 3 2 1 30 30 H 1.08994 * 109.47435 * 59.99990 * 3 2 1 31 31 H 0.97000 * 119.99673 * 179.97438 * 7 6 4 32 32 H 1.08998 * 109.47076 * 179.97438 * 12 2 1 33 33 H 1.09004 * 109.46815 * 60.00429 * 12 2 1 34 34 H 1.08998 * 109.47578 * 60.00129 * 14 13 12 35 35 H 1.09003 * 109.47601 * 299.99714 * 14 13 12 36 36 H 1.09003 * 109.62029 * 285.36900 * 17 15 14 37 37 H 1.08999 * 109.62226 * 45.73888 * 17 15 14 38 38 H 1.09000 * 109.35606 * 174.73143 * 18 17 15 39 39 H 1.09003 * 109.35331 * 294.30432 * 18 17 15 40 40 H 1.09005 * 117.53767 * 219.05898 * 21 19 18 41 41 H 1.09002 * 117.54068 * 4.23815 * 21 19 18 42 42 H 1.09002 * 109.27453 * 218.03292 * 24 22 19 43 43 H 1.09001 * 109.26912 * 98.56885 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8280 -2.5199 -4.0081 10 1 1.8279 -0.4193 -5.2204 11 1 3.8075 -1.1190 -4.0077 12 6 2.0400 -0.7212 1.2493 13 16 1.4353 0.1339 2.7304 14 6 2.1331 -0.8516 4.0840 15 6 1.7082 -0.2495 5.4249 16 1 0.6218 -0.1697 5.4623 17 6 2.3322 1.1416 5.5851 18 6 1.6254 1.8632 6.7327 19 6 1.6736 1.0113 7.9991 20 1 2.0656 1.5118 8.8844 21 6 0.5008 0.0398 8.2032 22 6 1.8986 -0.4901 7.9118 23 1 2.4213 -0.9435 8.7540 24 6 2.1974 -1.1378 6.5688 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 0.7095 1.1617 -3.4844 32 1 3.1300 -0.7216 1.2491 33 1 1.6767 -1.7489 1.2492 34 1 3.2208 -0.8480 4.0129 35 1 1.7678 -1.8762 4.0134 36 1 3.3934 1.0426 5.8136 37 1 2.2078 1.7072 4.6617 38 1 2.1202 2.8163 6.9194 39 1 0.5862 2.0456 6.4592 40 1 0.1170 -0.0811 9.2163 41 1 -0.2413 -0.0286 7.4077 42 1 1.6941 -2.1032 6.5150 43 1 3.2728 -1.2878 6.4731 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598719933.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:30 Heat of formation + Delta-G solvation = -12.292776 kcal Electronic energy + Delta-G solvation = -18578.351701 eV Core-core repulsion = 15941.982270 eV Total energy + Delta-G solvation = -2636.369431 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.156 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.72210 -35.87985 -34.33947 -31.47563 -31.19280 -27.65264 -26.04743 -25.55425 -25.07492 -24.01074 -21.94658 -20.92985 -18.87014 -18.56651 -16.23907 -15.92297 -15.43352 -14.74047 -14.69089 -14.37021 -14.01261 -13.54714 -13.33849 -13.20238 -12.75704 -12.43938 -12.30322 -11.98785 -11.81945 -11.39373 -11.26629 -10.96893 -10.89260 -10.85446 -10.70858 -10.64590 -10.33191 -10.22061 -9.99268 -9.85645 -9.74133 -9.45367 -9.44218 -9.24911 -8.50799 -8.33591 -6.88418 -5.95638 -4.07132 2.34648 3.30765 3.35499 3.36605 3.42630 3.60968 4.42680 4.50234 4.63332 4.64466 4.87560 4.94267 5.19355 5.21085 5.29818 5.44016 5.51705 5.55174 5.59509 5.61936 5.79256 5.86452 5.93019 6.03257 6.06597 6.08850 6.15412 6.20404 6.21786 6.39737 6.46782 6.61307 6.89926 7.04676 7.22771 7.23099 7.46044 7.70303 7.75060 8.12473 8.23643 8.46105 8.92042 9.57768 11.04985 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.048609 B = 0.003640 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.881242 B = 7690.068402 C = 7886.144237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.082 3.918 3 C -0.130 4.130 4 C -0.508 4.508 5 H 0.053 0.947 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.892 3.108 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.278 1.278 12 C -0.054 4.054 13 S -0.265 6.265 14 C -0.095 4.095 15 C -0.068 4.068 16 H 0.077 0.923 17 C -0.118 4.118 18 C -0.088 4.088 19 C -0.147 4.147 20 H 0.097 0.903 21 C -0.184 4.184 22 C -0.139 4.139 23 H 0.095 0.905 24 C -0.081 4.081 25 H 0.021 0.979 26 H 0.082 0.918 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.082 0.918 30 H 0.021 0.979 31 H 0.260 0.740 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.066 0.934 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.441 -0.868 18.429 18.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.081 3.919 3 C -0.188 4.188 4 C -0.548 4.548 5 H 0.071 0.929 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.720 3.280 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.204 1.204 12 C -0.202 4.202 13 S -0.036 6.036 14 C -0.243 4.243 15 C -0.087 4.087 16 H 0.096 0.904 17 C -0.155 4.155 18 C -0.126 4.126 19 C -0.165 4.165 20 H 0.116 0.884 21 C -0.221 4.221 22 C -0.157 4.157 23 H 0.114 0.886 24 C -0.120 4.120 25 H 0.040 0.960 26 H 0.100 0.900 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.100 0.900 30 H 0.040 0.960 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.115 0.885 42 H 0.084 0.916 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.720 0.148 18.353 18.368 hybrid contribution 1.184 -1.754 -0.858 2.284 sum 1.904 -1.606 17.495 17.671 Atomic orbital electron populations 1.21834 0.97409 0.98980 1.00623 1.17948 0.92969 0.92503 0.88529 1.21830 0.98149 0.98214 1.00619 1.21014 1.31633 1.12050 0.90053 0.92877 1.24881 0.94924 0.94943 0.98690 1.69823 1.36479 1.22603 1.23225 0.86666 0.79161 0.79769 0.82420 1.20356 1.21260 1.20356 1.23814 1.01613 1.00656 0.94162 1.86778 1.71146 1.44390 1.01303 1.23416 1.02846 1.01517 0.96533 1.20917 1.00888 0.95219 0.91669 0.90433 1.21721 0.99318 0.95552 0.98956 1.21038 1.01117 0.97574 0.92844 1.22248 1.02985 0.91507 0.99782 0.88435 1.23139 0.91588 1.05085 1.02307 1.21789 0.99449 0.95695 0.98803 0.88646 1.20907 1.01230 0.98154 0.91695 0.95997 0.89953 0.95857 0.95852 0.89960 0.95996 0.92961 0.91866 0.91906 0.90958 0.91000 0.92039 0.89870 0.91696 0.91561 0.89307 0.88543 0.91585 0.91442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.01 37.16 0.30 -2.91 16 2 C 0.08 2.01 0.52 -155.65 -0.08 1.93 16 3 C -0.13 -3.19 8.01 37.16 0.30 -2.89 16 4 C -0.51 -13.63 8.01 -34.44 -0.28 -13.91 16 5 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 6 C 0.07 1.81 5.15 -17.82 -0.09 1.72 16 7 N -0.88 -24.39 9.35 55.43 0.52 -23.87 16 8 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 C -0.05 -1.15 4.88 37.16 0.18 -0.97 16 13 S -0.26 -4.84 17.46 -107.50 -1.88 -6.71 16 14 C -0.09 -1.35 5.40 37.16 0.20 -1.14 16 15 C -0.07 -0.82 1.93 -90.53 -0.17 -0.99 16 16 H 0.08 1.01 7.11 -51.93 -0.37 0.64 16 17 C -0.12 -1.41 5.22 -26.64 -0.14 -1.55 16 18 C -0.09 -0.93 5.83 -26.94 -0.16 -1.08 16 19 C -0.15 -1.41 6.19 -90.91 -0.56 -1.97 16 20 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 21 C -0.18 -1.71 9.66 -26.75 -0.26 -1.97 16 22 C -0.14 -1.32 6.00 -91.92 -0.55 -1.87 16 23 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 24 C -0.08 -0.83 5.23 -27.27 -0.14 -0.97 16 25 H 0.02 0.49 6.91 -51.93 -0.36 0.14 16 26 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 27 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.02 0.55 8.14 -51.92 -0.42 0.12 16 29 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 30 H 0.02 0.49 6.91 -51.93 -0.36 0.13 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 36 H 0.06 0.71 8.04 -51.93 -0.42 0.30 16 37 H 0.08 1.16 6.81 -51.93 -0.35 0.80 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.72 8.06 -51.93 -0.42 0.31 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.10 0.96 7.26 -51.93 -0.38 0.59 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 334.73 15.07 5.04 5.04 Total: -1.00 -26.78 334.73 -10.69 -37.47 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.90 Total: 0.70 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: -1.46 Total: -28.58 kcal Atomic # 7 Polarization: -24.39 SS G_CDS: 0.52 Total: -23.87 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -4.84 SS G_CDS: -1.88 Total: -6.71 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.78 -10.69 -37.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598719933.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.178 kcal (2) G-P(sol) polarization free energy of solvation -26.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds