Wall clock time and date at job start Mon Mar 30 2020 07:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47046 * 2 1 4 4 C 1.50703 * 109.47140 * 239.99722 * 2 1 3 5 5 H 1.07992 * 120.00155 * 240.00286 * 4 2 1 6 6 C 1.37877 * 119.99574 * 59.99947 * 4 2 1 7 7 N 1.31514 * 120.00242 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99658 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46907 * 60.00512 * 8 6 4 10 10 H 1.48501 * 109.46820 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47074 * 299.99965 * 8 6 4 12 12 C 1.53002 * 109.46910 * 119.99809 * 2 1 3 13 13 S 1.81401 * 109.47275 * 300.00028 * 12 2 1 14 14 C 1.81394 * 102.99789 * 180.02562 * 13 12 2 15 15 C 1.53006 * 109.46954 * 179.97438 * 14 13 12 16 16 H 1.09002 * 109.61619 * 54.99784 * 15 14 13 17 17 C 1.53297 * 109.61448 * 294.64055 * 15 14 13 18 18 C 1.52881 * 108.57900 * 165.64904 * 17 15 14 19 19 C 1.52704 * 110.15661 * 54.51953 * 18 17 15 20 20 H 1.08993 * 115.39085 * 127.17458 * 19 18 17 21 21 C 1.53650 * 116.02875 * 269.79902 * 19 18 17 22 22 C 1.52064 * 120.52167 * 338.53005 * 19 18 17 23 23 H 1.08999 * 115.93025 * 149.26134 * 22 19 18 24 24 C 1.52071 * 120.02227 * 5.28796 * 22 19 18 25 25 H 1.08999 * 109.46876 * 300.00716 * 1 2 3 26 26 H 1.08996 * 109.46825 * 60.00050 * 1 2 3 27 27 H 1.08996 * 109.47143 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46769 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47268 * 299.99679 * 3 2 1 30 30 H 1.08994 * 109.47435 * 59.99990 * 3 2 1 31 31 H 0.97000 * 119.99673 * 179.97438 * 7 6 4 32 32 H 1.08998 * 109.47076 * 179.97438 * 12 2 1 33 33 H 1.09004 * 109.46815 * 60.00429 * 12 2 1 34 34 H 1.08998 * 109.47578 * 60.00129 * 14 13 12 35 35 H 1.09003 * 109.47601 * 299.99714 * 14 13 12 36 36 H 1.09003 * 109.62029 * 285.36900 * 17 15 14 37 37 H 1.08999 * 109.62226 * 45.73888 * 17 15 14 38 38 H 1.09000 * 109.35606 * 174.73143 * 18 17 15 39 39 H 1.09003 * 109.35331 * 294.30432 * 18 17 15 40 40 H 1.09005 * 117.53767 * 219.05898 * 21 19 18 41 41 H 1.09002 * 117.54068 * 4.23815 * 21 19 18 42 42 H 1.09002 * 109.27453 * 218.03292 * 24 22 19 43 43 H 1.09001 * 109.26912 * 98.56885 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8280 -2.5199 -4.0081 10 1 1.8279 -0.4193 -5.2204 11 1 3.8075 -1.1190 -4.0077 12 6 2.0400 -0.7212 1.2493 13 16 1.4353 0.1339 2.7304 14 6 2.1331 -0.8516 4.0840 15 6 1.7082 -0.2495 5.4249 16 1 0.6218 -0.1697 5.4623 17 6 2.3322 1.1416 5.5851 18 6 1.6254 1.8632 6.7327 19 6 1.6736 1.0113 7.9991 20 1 2.0656 1.5118 8.8844 21 6 0.5008 0.0398 8.2032 22 6 1.8986 -0.4901 7.9118 23 1 2.4213 -0.9435 8.7540 24 6 2.1974 -1.1378 6.5688 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 0.7095 1.1617 -3.4844 32 1 3.1300 -0.7216 1.2491 33 1 1.6767 -1.7489 1.2492 34 1 3.2208 -0.8480 4.0129 35 1 1.7678 -1.8762 4.0134 36 1 3.3934 1.0426 5.8136 37 1 2.2078 1.7072 4.6617 38 1 2.1202 2.8163 6.9194 39 1 0.5862 2.0456 6.4592 40 1 0.1170 -0.0811 9.2163 41 1 -0.2413 -0.0286 7.4077 42 1 1.6941 -2.1032 6.5150 43 1 3.2728 -1.2878 6.4731 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598719933.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:30 Heat of formation + Delta-G solvation = -21.988882 kcal Electronic energy + Delta-G solvation = -18578.772156 eV Core-core repulsion = 15941.982270 eV Total energy + Delta-G solvation = -2636.789886 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.156 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.53809 -37.82077 -35.26053 -33.50641 -32.05305 -28.77294 -27.67996 -27.55424 -27.13906 -24.90993 -22.81748 -21.77445 -20.77536 -19.42059 -17.95820 -17.14597 -16.76558 -16.57249 -15.74668 -15.56605 -15.21427 -14.92075 -14.77870 -14.39054 -14.22359 -13.81302 -13.50063 -13.19965 -13.12819 -13.06731 -12.77022 -12.62432 -12.54130 -12.21598 -12.18077 -11.96380 -11.78981 -11.70555 -11.41431 -11.35401 -11.19582 -10.91523 -10.61184 -10.49564 -10.39048 -10.29378 -8.37103 -8.00213 -6.18541 0.93117 1.44173 1.44503 1.51850 1.92993 2.46288 2.87972 3.22170 3.70923 3.72474 3.80717 4.02995 4.13469 4.30187 4.32918 4.36701 4.41038 4.53398 4.55963 4.66268 4.72743 4.77449 4.78224 4.95832 4.96352 5.04835 5.05937 5.08413 5.20570 5.26103 5.26522 5.26609 5.33865 5.38539 5.46757 5.47966 5.53805 5.66001 5.67278 6.11096 6.22032 6.42176 6.86878 7.49137 8.98411 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.048609 B = 0.003640 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.881242 B = 7690.068402 C = 7886.144237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.072 3.928 3 C -0.117 4.117 4 C -0.528 4.528 5 H 0.050 0.950 6 C 0.024 3.976 7 N -0.904 5.904 8 Si 0.950 3.050 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 C -0.050 4.050 13 S -0.282 6.282 14 C -0.081 4.081 15 C -0.062 4.062 16 H 0.067 0.933 17 C -0.116 4.116 18 C -0.087 4.087 19 C -0.151 4.151 20 H 0.111 0.889 21 C -0.185 4.185 22 C -0.139 4.139 23 H 0.112 0.888 24 C -0.077 4.077 25 H 0.032 0.968 26 H 0.056 0.944 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.056 0.944 30 H 0.032 0.968 31 H 0.259 0.741 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.148 -1.686 20.189 20.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.071 3.929 3 C -0.175 4.175 4 C -0.567 4.567 5 H 0.068 0.932 6 C -0.176 4.176 7 N -0.542 5.542 8 Si 0.776 3.224 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.199 1.199 12 C -0.198 4.198 13 S -0.054 6.054 14 C -0.229 4.229 15 C -0.082 4.082 16 H 0.086 0.914 17 C -0.154 4.154 18 C -0.125 4.125 19 C -0.169 4.169 20 H 0.129 0.871 21 C -0.222 4.222 22 C -0.157 4.157 23 H 0.130 0.870 24 C -0.116 4.116 25 H 0.051 0.949 26 H 0.075 0.925 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.121 0.879 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.427 -0.671 20.110 20.172 hybrid contribution 0.952 -1.483 -1.327 2.206 sum 2.379 -2.155 18.783 19.055 Atomic orbital electron populations 1.21666 0.97670 0.98406 0.99828 1.17958 0.92774 0.92538 0.89614 1.21659 0.97715 0.98301 0.99828 1.21344 1.31788 1.12231 0.91387 0.93204 1.25572 0.95145 0.95605 1.01286 1.69959 1.37121 1.23525 1.23613 0.85749 0.78690 0.78771 0.79204 1.19942 1.21043 1.19933 1.23493 1.01414 1.00343 0.94552 1.86770 1.71661 1.45294 1.01668 1.23498 1.03006 1.01097 0.95333 1.20878 1.00303 0.95723 0.91255 0.91448 1.21676 0.99879 0.95306 0.98550 1.21009 1.00447 0.98132 0.92895 1.22279 1.03401 0.91574 0.99609 0.87070 1.23170 0.91376 1.04895 1.02762 1.21847 0.99624 0.95499 0.98757 0.87026 1.20880 1.01687 0.97916 0.91147 0.94935 0.92470 0.96205 0.96178 0.92496 0.94902 0.93106 0.91958 0.92046 0.90178 0.90227 0.91445 0.92124 0.90864 0.92446 0.87909 0.89639 0.90987 0.90665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.84 8.01 71.98 0.58 -5.26 16 2 C 0.07 3.57 0.52 -52.92 -0.03 3.54 16 3 C -0.12 -5.79 8.01 71.98 0.58 -5.21 16 4 C -0.53 -28.51 8.01 25.60 0.21 -28.31 16 5 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 6 C 0.02 1.27 5.15 84.65 0.44 1.71 16 7 N -0.90 -50.63 9.35 21.45 0.20 -50.43 16 8 Si 0.95 43.06 29.54 68.60 2.03 45.09 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 C -0.05 -2.09 4.88 71.98 0.35 -1.74 16 13 S -0.28 -10.13 17.46 -56.49 -0.99 -11.11 16 14 C -0.08 -2.16 5.40 71.98 0.39 -1.78 16 15 C -0.06 -1.40 1.93 -10.73 -0.02 -1.42 16 16 H 0.07 1.67 7.11 -2.39 -0.02 1.66 16 17 C -0.12 -2.63 5.22 30.65 0.16 -2.47 16 18 C -0.09 -1.70 5.83 30.46 0.18 -1.53 16 19 C -0.15 -2.51 6.19 -10.98 -0.07 -2.57 16 20 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 21 C -0.19 -3.02 9.66 30.58 0.30 -2.72 16 22 C -0.14 -2.23 6.00 -11.64 -0.07 -2.30 16 23 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 24 C -0.08 -1.37 5.23 30.25 0.16 -1.22 16 25 H 0.03 1.49 6.91 -2.39 -0.02 1.48 16 26 H 0.06 3.11 6.07 -2.39 -0.01 3.10 16 27 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.06 3.09 6.07 -2.39 -0.01 3.08 16 30 H 0.03 1.50 6.91 -2.39 -0.02 1.49 16 31 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 32 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.07 1.44 8.04 -2.39 -0.02 1.42 16 37 H 0.06 1.65 6.81 -2.39 -0.02 1.63 16 38 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.06 1.21 8.06 -2.39 -0.02 1.19 16 40 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.09 1.59 7.26 -2.39 -0.02 1.57 16 42 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -56.54 334.73 5.32 -51.22 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.94 Total: 16.51 kcal Atomic # 6 Polarization: -54.41 SS G_CDS: 3.14 Total: -51.27 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: 0.20 Total: -50.43 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: -10.13 SS G_CDS: -0.99 Total: -11.11 kcal Total: -56.54 5.32 -51.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598719933.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.231 kcal (2) G-P(sol) polarization free energy of solvation -56.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds