Wall clock time and date at job start Mon Mar 30 2020 07:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47045 * 2 1 4 4 C 1.50699 * 109.47037 * 240.00060 * 2 1 3 5 5 H 1.08006 * 119.99757 * 239.99990 * 4 2 1 6 6 C 1.37871 * 120.00378 * 60.00098 * 4 2 1 7 7 N 1.31512 * 120.00056 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00237 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47057 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47264 * 119.99893 * 8 6 4 11 11 H 1.48503 * 109.47308 * 240.00064 * 8 6 4 12 12 C 1.53002 * 109.46741 * 119.99719 * 2 1 3 13 13 S 1.81397 * 109.47150 * 300.00228 * 12 2 1 14 14 C 1.81402 * 102.99852 * 180.02562 * 13 12 2 15 15 C 1.52998 * 109.47099 * 180.02562 * 14 13 12 16 16 H 1.08995 * 109.62101 * 54.63554 * 15 14 13 17 17 C 1.53301 * 109.76743 * 294.17537 * 15 14 13 18 18 C 1.52869 * 108.59064 * 165.74010 * 17 15 14 19 19 C 1.52076 * 110.51328 * 54.89321 * 18 17 15 20 20 H 1.08998 * 114.63961 * 194.37054 * 19 18 17 21 21 C 1.52297 * 119.83628 * 49.55283 * 19 18 17 22 22 C 1.52060 * 120.01919 * 338.29885 * 19 18 17 23 23 H 1.09005 * 117.25704 * 216.65920 * 22 19 18 24 24 C 1.52707 * 120.52592 * 5.29046 * 22 19 18 25 25 H 1.08996 * 109.47615 * 300.00508 * 1 2 3 26 26 H 1.09004 * 109.47055 * 60.00276 * 1 2 3 27 27 H 1.09005 * 109.47043 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47316 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.46969 * 299.99776 * 3 2 1 30 30 H 1.09000 * 109.46970 * 59.99650 * 3 2 1 31 31 H 0.96997 * 120.00667 * 179.97438 * 7 6 4 32 32 H 1.08996 * 109.46829 * 179.97438 * 12 2 1 33 33 H 1.09000 * 109.46672 * 60.00141 * 12 2 1 34 34 H 1.08997 * 109.47396 * 59.99422 * 14 13 12 35 35 H 1.09007 * 109.46790 * 299.99867 * 14 13 12 36 36 H 1.09008 * 109.61072 * 46.01392 * 17 15 14 37 37 H 1.08994 * 109.62259 * 285.47822 * 17 15 14 38 38 H 1.09011 * 109.27120 * 294.62612 * 18 17 15 39 39 H 1.09000 * 109.27142 * 175.16188 * 18 17 15 40 40 H 1.09002 * 117.54154 * 357.55174 * 21 19 18 41 41 H 1.09003 * 117.54170 * 142.73038 * 21 19 18 42 42 H 1.08998 * 109.36133 * 98.73244 * 24 22 19 43 43 H 1.09002 * 109.36078 * 218.31931 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 3.1485 -2.2857 -3.6037 10 1 1.1679 -1.5866 -4.8164 11 1 3.1474 -0.1858 -4.8160 12 6 2.0399 -0.7212 1.2493 13 16 1.4352 0.1339 2.7303 14 6 2.1329 -0.8516 4.0841 15 6 1.7069 -0.2502 5.4248 16 1 0.6208 -0.1652 5.4593 17 6 2.3375 1.1368 5.5947 18 6 1.6307 1.8560 6.7436 19 6 1.6733 1.0115 8.0076 20 1 0.9899 1.3343 8.7931 21 6 2.9944 0.4172 8.4776 22 6 1.8911 -0.4904 7.9121 23 1 1.3516 -1.1191 8.6204 24 6 2.1881 -1.1470 6.5657 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 0.7088 1.1612 -3.4844 32 1 3.1299 -0.7216 1.2491 33 1 1.6765 -1.7489 1.2493 34 1 3.2206 -0.8480 4.0130 35 1 1.7676 -1.8761 4.0133 36 1 2.2161 1.7090 4.6749 37 1 3.3974 1.0312 5.8259 38 1 0.5920 2.0395 6.4685 39 1 2.1262 2.8087 6.9307 40 1 3.8736 0.5887 7.8565 41 1 3.1770 0.3809 9.5516 42 1 3.2620 -1.3072 6.4709 43 1 1.6754 -2.1073 6.5111 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598719937.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:34 Heat of formation + Delta-G solvation = -12.415961 kcal Electronic energy + Delta-G solvation = -18553.887625 eV Core-core repulsion = 15917.512852 eV Total energy + Delta-G solvation = -2636.374773 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.156 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.72339 -35.88156 -34.37688 -31.47733 -31.17086 -27.58221 -26.01873 -25.55420 -25.07887 -24.31222 -21.37839 -21.30451 -18.87511 -18.51190 -16.38754 -15.94474 -15.44444 -14.72304 -14.68024 -14.05173 -13.97740 -13.91524 -13.33577 -13.27020 -12.55958 -12.46309 -12.31250 -12.13334 -11.60900 -11.41601 -11.27723 -11.08891 -10.88255 -10.83339 -10.70689 -10.60064 -10.37334 -10.22273 -10.04334 -9.84425 -9.73885 -9.45590 -9.43728 -9.23194 -8.49740 -8.34378 -6.88187 -5.96054 -4.07377 2.34952 3.28261 3.35933 3.38666 3.43206 3.60185 4.42491 4.45268 4.62731 4.70548 4.86914 4.95769 5.14872 5.22463 5.29614 5.37521 5.49784 5.55927 5.61200 5.68213 5.77053 5.84293 5.86980 5.99532 6.07115 6.12382 6.17268 6.19825 6.21853 6.39396 6.45380 6.61413 6.89914 7.04690 7.22793 7.23177 7.46152 7.70262 7.75175 8.12454 8.23711 8.46037 8.92291 9.57682 11.04656 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.049381 B = 0.003601 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.878027 B = 7773.504192 C = 7985.521428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.082 3.918 3 C -0.130 4.130 4 C -0.506 4.506 5 H 0.054 0.946 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.891 3.109 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.055 4.055 13 S -0.265 6.265 14 C -0.095 4.095 15 C -0.065 4.065 16 H 0.079 0.921 17 C -0.120 4.120 18 C -0.088 4.088 19 C -0.138 4.138 20 H 0.094 0.906 21 C -0.184 4.184 22 C -0.147 4.147 23 H 0.099 0.901 24 C -0.081 4.081 25 H 0.021 0.979 26 H 0.082 0.918 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.082 0.918 30 H 0.021 0.979 31 H 0.259 0.741 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.990 -0.752 18.541 18.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.080 3.920 3 C -0.188 4.188 4 C -0.546 4.546 5 H 0.072 0.928 6 C -0.135 4.135 7 N -0.521 5.521 8 Si 0.719 3.281 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.203 4.203 13 S -0.036 6.036 14 C -0.244 4.244 15 C -0.084 4.084 16 H 0.098 0.902 17 C -0.158 4.158 18 C -0.125 4.125 19 C -0.156 4.156 20 H 0.113 0.887 21 C -0.221 4.221 22 C -0.166 4.166 23 H 0.117 0.883 24 C -0.120 4.120 25 H 0.040 0.960 26 H 0.101 0.899 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.100 0.900 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.083 0.917 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.279 0.252 18.470 18.516 hybrid contribution 1.182 -1.731 -0.872 2.271 sum 2.461 -1.479 17.598 17.831 Atomic orbital electron populations 1.21837 0.97401 0.98995 1.00639 1.17954 0.92979 0.92503 0.88555 1.21830 0.98144 0.98224 1.00625 1.21093 1.31461 1.12003 0.90032 0.92771 1.24884 0.94942 0.94954 0.98722 1.69839 1.36575 1.22705 1.23013 0.86551 0.78628 0.79685 0.83192 1.19909 1.21037 1.21038 1.23810 1.01599 1.00664 0.94177 1.86780 1.71145 1.44400 1.01300 1.23432 1.02770 1.01561 0.96599 1.20887 1.01031 0.95039 0.91466 0.90220 1.21752 0.99138 0.95791 0.99094 1.20852 1.01294 0.97671 0.92722 1.21846 0.99480 0.94520 0.99739 0.88735 1.23119 0.93057 1.05347 1.00607 1.22195 1.02975 0.92763 0.98644 0.88284 1.21108 1.01093 0.98064 0.91782 0.95976 0.89948 0.95850 0.95855 0.89960 0.95989 0.93076 0.91884 0.91902 0.91047 0.90983 0.89774 0.92222 0.91323 0.91636 0.88698 0.89331 0.91664 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.01 37.16 0.30 -2.91 16 2 C 0.08 2.00 0.52 -155.66 -0.08 1.92 16 3 C -0.13 -3.19 8.01 37.16 0.30 -2.89 16 4 C -0.51 -13.59 8.01 -34.44 -0.28 -13.87 16 5 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 6 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 7 N -0.88 -24.39 9.35 55.43 0.52 -23.88 16 8 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 9 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C -0.05 -1.15 4.88 37.16 0.18 -0.97 16 13 S -0.26 -4.84 17.50 -107.50 -1.88 -6.72 16 14 C -0.10 -1.35 5.40 37.16 0.20 -1.15 16 15 C -0.06 -0.79 2.15 -90.53 -0.19 -0.98 16 16 H 0.08 1.05 8.04 -51.93 -0.42 0.63 16 17 C -0.12 -1.43 5.00 -26.64 -0.13 -1.56 16 18 C -0.09 -0.92 5.93 -27.27 -0.16 -1.08 16 19 C -0.14 -1.31 6.00 -91.93 -0.55 -1.86 16 20 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 21 C -0.18 -1.65 9.66 -26.75 -0.26 -1.90 16 22 C -0.15 -1.40 6.19 -90.91 -0.56 -1.96 16 23 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 24 C -0.08 -0.84 5.12 -26.94 -0.14 -0.97 16 25 H 0.02 0.50 6.91 -51.93 -0.36 0.14 16 26 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 27 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 30 H 0.02 0.49 6.91 -51.93 -0.36 0.14 16 31 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 1.00 8.14 -51.92 -0.42 0.57 16 36 H 0.08 1.16 6.86 -51.92 -0.36 0.81 16 37 H 0.06 0.68 7.11 -51.93 -0.37 0.32 16 38 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.88 7.26 -51.93 -0.38 0.50 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.66 8.06 -51.93 -0.42 0.24 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 334.80 15.07 5.05 5.05 Total: -1.00 -26.84 334.80 -10.71 -37.55 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -7.90 Total: 0.55 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: -1.47 Total: -28.50 kcal Atomic # 7 Polarization: -24.39 SS G_CDS: 0.52 Total: -23.88 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -4.84 SS G_CDS: -1.88 Total: -6.72 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -26.84 -10.71 -37.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598719937.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.134 kcal (2) G-P(sol) polarization free energy of solvation -26.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds