Wall clock time and date at job start Mon Mar 30 2020 07:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47045 * 2 1 4 4 C 1.50699 * 109.47037 * 240.00060 * 2 1 3 5 5 H 1.08006 * 119.99757 * 239.99990 * 4 2 1 6 6 C 1.37871 * 120.00378 * 60.00098 * 4 2 1 7 7 N 1.31512 * 120.00056 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00237 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47057 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47264 * 119.99893 * 8 6 4 11 11 H 1.48503 * 109.47308 * 240.00064 * 8 6 4 12 12 C 1.53002 * 109.46741 * 119.99719 * 2 1 3 13 13 S 1.81397 * 109.47150 * 300.00228 * 12 2 1 14 14 C 1.81402 * 102.99852 * 180.02562 * 13 12 2 15 15 C 1.52998 * 109.47099 * 180.02562 * 14 13 12 16 16 H 1.08995 * 109.62101 * 54.63554 * 15 14 13 17 17 C 1.53301 * 109.76743 * 294.17537 * 15 14 13 18 18 C 1.52869 * 108.59064 * 165.74010 * 17 15 14 19 19 C 1.52076 * 110.51328 * 54.89321 * 18 17 15 20 20 H 1.08998 * 114.63961 * 194.37054 * 19 18 17 21 21 C 1.52297 * 119.83628 * 49.55283 * 19 18 17 22 22 C 1.52060 * 120.01919 * 338.29885 * 19 18 17 23 23 H 1.09005 * 117.25704 * 216.65920 * 22 19 18 24 24 C 1.52707 * 120.52592 * 5.29046 * 22 19 18 25 25 H 1.08996 * 109.47615 * 300.00508 * 1 2 3 26 26 H 1.09004 * 109.47055 * 60.00276 * 1 2 3 27 27 H 1.09005 * 109.47043 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47316 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.46969 * 299.99776 * 3 2 1 30 30 H 1.09000 * 109.46970 * 59.99650 * 3 2 1 31 31 H 0.96997 * 120.00667 * 179.97438 * 7 6 4 32 32 H 1.08996 * 109.46829 * 179.97438 * 12 2 1 33 33 H 1.09000 * 109.46672 * 60.00141 * 12 2 1 34 34 H 1.08997 * 109.47396 * 59.99422 * 14 13 12 35 35 H 1.09007 * 109.46790 * 299.99867 * 14 13 12 36 36 H 1.09008 * 109.61072 * 46.01392 * 17 15 14 37 37 H 1.08994 * 109.62259 * 285.47822 * 17 15 14 38 38 H 1.09011 * 109.27120 * 294.62612 * 18 17 15 39 39 H 1.09000 * 109.27142 * 175.16188 * 18 17 15 40 40 H 1.09002 * 117.54154 * 357.55174 * 21 19 18 41 41 H 1.09003 * 117.54170 * 142.73038 * 21 19 18 42 42 H 1.08998 * 109.36133 * 98.73244 * 24 22 19 43 43 H 1.09002 * 109.36078 * 218.31931 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 3.1485 -2.2857 -3.6037 10 1 1.1679 -1.5866 -4.8164 11 1 3.1474 -0.1858 -4.8160 12 6 2.0399 -0.7212 1.2493 13 16 1.4352 0.1339 2.7303 14 6 2.1329 -0.8516 4.0841 15 6 1.7069 -0.2502 5.4248 16 1 0.6208 -0.1652 5.4593 17 6 2.3375 1.1368 5.5947 18 6 1.6307 1.8560 6.7436 19 6 1.6733 1.0115 8.0076 20 1 0.9899 1.3343 8.7931 21 6 2.9944 0.4172 8.4776 22 6 1.8911 -0.4904 7.9121 23 1 1.3516 -1.1191 8.6204 24 6 2.1881 -1.1470 6.5657 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 0.7088 1.1612 -3.4844 32 1 3.1299 -0.7216 1.2491 33 1 1.6765 -1.7489 1.2493 34 1 3.2206 -0.8480 4.0130 35 1 1.7676 -1.8761 4.0133 36 1 2.2161 1.7090 4.6749 37 1 3.3974 1.0312 5.8259 38 1 0.5920 2.0395 6.4685 39 1 2.1262 2.8087 6.9307 40 1 3.8736 0.5887 7.8565 41 1 3.1770 0.3809 9.5516 42 1 3.2620 -1.3072 6.4709 43 1 1.6754 -2.1073 6.5111 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598719937.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:33 Heat of formation + Delta-G solvation = -22.142199 kcal Electronic energy + Delta-G solvation = -18554.309387 eV Core-core repulsion = 15917.512852 eV Total energy + Delta-G solvation = -2636.796534 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.156 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.53143 -37.82228 -35.29514 -33.50871 -32.02272 -28.72776 -27.63400 -27.55260 -27.14323 -25.18422 -22.34773 -22.03842 -20.77853 -19.37790 -17.96162 -17.17992 -16.89706 -16.57216 -15.75136 -15.49075 -14.96705 -14.92421 -14.76066 -14.74710 -14.19285 -13.73744 -13.48442 -13.20845 -13.15807 -13.00642 -12.80525 -12.66353 -12.41132 -12.22437 -12.16058 -11.97920 -11.83110 -11.66411 -11.41979 -11.37011 -11.19186 -10.98713 -10.59373 -10.47995 -10.40030 -10.27601 -8.36865 -8.00677 -6.18827 0.93388 1.41364 1.44517 1.54148 1.93207 2.46004 2.88369 3.21854 3.61400 3.79207 3.89358 4.04325 4.10037 4.29313 4.33114 4.36837 4.40941 4.50068 4.50439 4.71192 4.77878 4.79536 4.82528 4.89070 4.96114 4.97411 5.04517 5.08555 5.23767 5.26413 5.26628 5.29522 5.36980 5.39674 5.46556 5.46977 5.51302 5.66264 5.67382 6.11223 6.22111 6.42220 6.87033 7.48995 8.98341 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.049381 B = 0.003601 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.878027 B = 7773.504192 C = 7985.521428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.072 3.928 3 C -0.117 4.117 4 C -0.526 4.526 5 H 0.049 0.951 6 C 0.023 3.977 7 N -0.904 5.904 8 Si 0.950 3.050 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.282 1.282 12 C -0.050 4.050 13 S -0.282 6.282 14 C -0.082 4.082 15 C -0.059 4.059 16 H 0.070 0.930 17 C -0.118 4.118 18 C -0.087 4.087 19 C -0.144 4.144 20 H 0.105 0.895 21 C -0.178 4.178 22 C -0.152 4.152 23 H 0.111 0.889 24 C -0.077 4.077 25 H 0.032 0.968 26 H 0.057 0.943 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.056 0.944 30 H 0.032 0.968 31 H 0.259 0.741 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.069 0.931 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.578 -1.538 20.262 20.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.071 3.929 3 C -0.175 4.175 4 C -0.565 4.565 5 H 0.068 0.932 6 C -0.177 4.177 7 N -0.543 5.543 8 Si 0.776 3.224 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.208 1.208 12 C -0.198 4.198 13 S -0.053 6.053 14 C -0.230 4.230 15 C -0.079 4.079 16 H 0.088 0.912 17 C -0.156 4.156 18 C -0.124 4.124 19 C -0.162 4.162 20 H 0.123 0.877 21 C -0.215 4.215 22 C -0.170 4.170 23 H 0.129 0.871 24 C -0.116 4.116 25 H 0.051 0.949 26 H 0.075 0.925 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.109 0.891 41 H 0.121 0.879 42 H 0.088 0.912 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.867 -0.534 20.188 20.281 hybrid contribution 0.996 -1.469 -1.328 2.216 sum 2.864 -2.003 18.860 19.181 Atomic orbital electron populations 1.21671 0.97649 0.98440 0.99855 1.17959 0.92788 0.92525 0.89608 1.21660 0.97721 0.98311 0.99841 1.21401 1.31606 1.12138 0.91382 0.93235 1.25571 0.95170 0.95619 1.01303 1.69969 1.37195 1.23608 1.23491 0.85632 0.78088 0.78716 0.79923 1.19458 1.20804 1.20798 1.23493 1.01387 1.00363 0.94592 1.86764 1.71628 1.45300 1.01632 1.23515 1.02878 1.01171 0.95414 1.20851 1.00459 0.95579 0.91010 0.91170 1.21701 0.99671 0.95500 0.98722 1.20818 1.00778 0.98082 0.92720 1.21867 1.00411 0.94441 0.99496 0.87688 1.23168 0.92524 1.04386 1.01399 1.22245 1.03582 0.92815 0.98390 0.87090 1.21072 1.01356 0.97926 0.91281 0.94895 0.92462 0.96176 0.96174 0.92497 0.94880 0.93119 0.92010 0.92043 0.90366 0.90186 0.91994 0.91709 0.91899 0.91028 0.89065 0.87923 0.91250 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.85 8.01 71.98 0.58 -5.28 16 2 C 0.07 3.57 0.52 -52.93 -0.03 3.54 16 3 C -0.12 -5.80 8.01 71.98 0.58 -5.22 16 4 C -0.53 -28.40 8.01 25.60 0.21 -28.19 16 5 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 6 C 0.02 1.23 5.15 84.65 0.44 1.67 16 7 N -0.90 -50.62 9.35 21.44 0.20 -50.42 16 8 Si 0.95 43.12 29.54 68.60 2.03 45.14 16 9 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 12 C -0.05 -2.11 4.88 71.98 0.35 -1.76 16 13 S -0.28 -10.09 17.50 -56.49 -0.99 -11.08 16 14 C -0.08 -2.18 5.40 71.98 0.39 -1.79 16 15 C -0.06 -1.34 2.15 -10.73 -0.02 -1.36 16 16 H 0.07 1.74 8.04 -2.39 -0.02 1.72 16 17 C -0.12 -2.66 5.00 30.65 0.15 -2.50 16 18 C -0.09 -1.67 5.93 30.25 0.18 -1.49 16 19 C -0.14 -2.39 6.00 -11.64 -0.07 -2.46 16 20 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 21 C -0.18 -2.68 9.66 30.58 0.30 -2.38 16 22 C -0.15 -2.46 6.19 -10.98 -0.07 -2.53 16 23 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 24 C -0.08 -1.39 5.12 30.46 0.16 -1.23 16 25 H 0.03 1.51 6.91 -2.39 -0.02 1.49 16 26 H 0.06 3.11 6.07 -2.38 -0.01 3.10 16 27 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.02 0.94 8.14 -2.39 -0.02 0.93 16 29 H 0.06 3.09 6.07 -2.38 -0.01 3.08 16 30 H 0.03 1.51 6.91 -2.39 -0.02 1.49 16 31 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 32 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 35 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.06 1.67 6.86 -2.38 -0.02 1.65 16 37 H 0.06 1.38 7.11 -2.39 -0.02 1.36 16 38 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.09 1.45 7.26 -2.39 -0.02 1.44 16 41 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.07 1.20 8.06 -2.39 -0.02 1.19 16 43 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -56.54 334.80 5.31 -51.23 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.94 Total: 16.12 kcal Atomic # 6 Polarization: -54.12 SS G_CDS: 3.13 Total: -50.99 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: 0.20 Total: -50.42 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: -10.09 SS G_CDS: -0.99 Total: -11.08 kcal Total: -56.54 5.31 -51.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598719937.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.088 kcal (2) G-P(sol) polarization free energy of solvation -56.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds