Wall clock time and date at job start Mon Mar 30 2020 06:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47116 * 2 1 4 4 C 1.47203 * 109.47271 * 119.99470 * 2 1 3 5 5 N 2.60807 * 109.46971 * 119.99430 * 2 1 3 6 6 N 1.46893 * 109.47557 * 239.99492 * 2 1 3 7 7 C 1.46905 * 110.99910 * 60.00149 * 6 2 1 8 8 C 1.53004 * 109.47315 * 198.82325 * 7 6 2 9 9 C 1.53000 * 109.47104 * 174.61039 * 8 7 6 10 10 S 1.80998 * 109.46870 * 179.97438 * 9 8 7 11 11 C 1.76203 * 99.99920 * 180.02562 * 10 9 8 12 12 H 1.07994 * 120.00050 * 359.97438 * 11 10 9 13 13 C 1.38801 * 119.99943 * 180.02562 * 11 10 9 14 14 N 1.31624 * 119.99904 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99735 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47446 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47038 * 119.99938 * 15 13 11 18 18 H 1.48497 * 109.47307 * 239.99763 * 15 13 11 19 19 C 1.46902 * 111.00656 * 183.95175 * 6 2 1 20 20 C 1.52999 * 117.50445 * 238.72504 * 19 6 2 21 21 C 1.52998 * 117.50173 * 170.09507 * 19 6 2 22 22 H 1.08999 * 109.47401 * 300.00458 * 1 2 3 23 23 H 1.09001 * 109.47122 * 60.00327 * 1 2 3 24 24 H 1.08998 * 109.47164 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47088 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.46978 * 299.99301 * 3 2 1 27 27 H 1.08999 * 109.47359 * 59.99517 * 3 2 1 28 28 H 1.08998 * 109.47224 * 318.81721 * 7 6 2 29 29 H 1.08996 * 109.47144 * 78.82223 * 7 6 2 30 30 H 1.09003 * 109.46462 * 294.61106 * 8 7 6 31 31 H 1.08995 * 109.47039 * 54.60562 * 8 7 6 32 32 H 1.09000 * 109.47122 * 300.00060 * 9 8 7 33 33 H 1.09007 * 109.46942 * 60.00037 * 9 8 7 34 34 H 0.97006 * 120.00136 * 180.02562 * 14 13 11 35 35 H 1.09002 * 115.54270 * 24.43010 * 19 6 2 36 36 H 1.09001 * 117.49402 * 359.97438 * 20 19 6 37 37 H 1.08994 * 117.50093 * 145.01691 * 20 19 6 38 38 H 1.08997 * 117.49912 * 214.98456 * 21 19 6 39 39 H 1.08996 * 117.49961 * 359.97438 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6938 1.2020 5 7 2.3993 -1.2293 2.1296 6 7 2.0197 -0.6925 -1.1993 7 6 1.5487 -0.0265 -2.4210 8 6 1.6608 -0.9911 -3.6034 9 6 1.0470 -0.3462 -4.8477 10 16 1.1803 -1.4870 -6.2465 11 6 0.4198 -0.5172 -7.5058 12 1 0.0453 0.4692 -7.2755 13 6 0.3012 -1.0214 -8.7936 14 7 0.7572 -2.2238 -9.0741 15 14 -0.5056 0.0066 -10.1284 16 1 -0.9298 1.3112 -9.5601 17 1 0.4644 0.2384 -11.2288 18 1 -1.6920 -0.7126 -10.6578 19 6 3.4851 -0.7946 -1.1869 20 6 4.2471 -0.1653 -2.3550 21 6 4.1401 -1.6875 -2.2427 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8901 27 1 1.6766 1.9564 0.8899 28 1 0.5084 0.2727 -2.2938 29 1 2.1597 0.8556 -2.6126 30 1 2.7109 -1.2154 -3.7909 31 1 1.1281 -1.9133 -3.3717 32 1 -0.0031 -0.1218 -4.6601 33 1 1.5799 0.5761 -5.0793 34 1 0.6747 -2.5761 -9.9741 35 1 3.9507 -0.7549 -0.2022 36 1 3.6609 0.3241 -3.1329 37 1 5.2142 0.2886 -2.1389 38 1 5.0368 -2.2350 -1.9526 39 1 3.4837 -2.1996 -2.9461 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685986425.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:25 Heat of formation + Delta-G solvation = 45.804166 kcal Electronic energy + Delta-G solvation = -18279.983631 eV Core-core repulsion = 15542.593129 eV Total energy + Delta-G solvation = -2737.390502 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.18922 -37.96980 -36.07770 -34.67211 -34.48836 -31.10221 -28.43776 -27.87607 -27.10588 -23.98456 -23.37419 -22.44283 -21.10181 -19.60209 -18.67361 -17.17309 -16.93601 -16.85076 -16.13521 -15.53076 -15.18532 -15.13787 -14.73433 -14.50423 -14.17606 -14.03011 -13.84021 -13.39587 -13.29305 -13.12121 -12.95023 -12.84593 -12.80180 -12.48107 -12.39986 -12.30209 -12.22402 -11.91855 -11.74223 -11.35281 -11.23979 -11.12990 -10.98933 -10.21265 -9.18803 -8.59113 -8.32643 -6.07297 1.34982 1.41273 1.48581 1.53802 1.68776 1.84621 2.33815 2.67711 2.78688 3.01985 3.05587 3.38937 3.81442 3.89288 3.95283 3.97095 4.12023 4.15799 4.28763 4.43393 4.55659 4.63042 4.69236 4.74178 4.80573 4.83358 4.89727 4.93807 4.99839 5.10439 5.21886 5.23661 5.33807 5.35746 5.45319 5.50496 5.93744 6.01811 6.23297 6.47043 7.10285 8.76722 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.033499 B = 0.003831 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.633764 B = 7306.942559 C = 7654.205564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.207 3.793 3 C -0.175 4.175 4 C 0.245 3.755 5 N -0.473 5.473 6 N -0.503 5.503 7 C 0.057 3.943 8 C -0.101 4.101 9 C -0.086 4.086 10 S -0.202 6.202 11 C -0.533 4.533 12 H 0.075 0.925 13 C 0.014 3.986 14 N -0.909 5.909 15 Si 0.992 3.008 16 H -0.260 1.260 17 H -0.274 1.274 18 H -0.274 1.274 19 C 0.016 3.984 20 C -0.202 4.202 21 C -0.190 4.190 22 H 0.088 0.912 23 H 0.096 0.904 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.102 0.898 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.270 0.730 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.776 9.590 16.443 19.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.115 3.885 3 C -0.235 4.235 4 C -0.074 4.074 5 N -0.149 5.149 6 N -0.226 5.226 7 C -0.071 4.071 8 C -0.139 4.139 9 C -0.235 4.235 10 S 0.026 5.974 11 C -0.681 4.681 12 H 0.093 0.907 13 C -0.191 4.191 14 N -0.546 5.546 15 Si 0.814 3.186 16 H -0.184 1.184 17 H -0.200 1.200 18 H -0.200 1.200 19 C -0.093 4.093 20 C -0.241 4.241 21 C -0.228 4.228 22 H 0.107 0.893 23 H 0.114 0.886 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.113 0.887 27 H 0.104 0.896 28 H 0.120 0.880 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.118 0.882 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.597 7.117 17.683 19.237 hybrid contribution -0.532 2.010 -1.281 2.442 sum 2.064 9.127 16.402 18.883 Atomic orbital electron populations 1.22052 0.89064 1.04096 1.05040 1.18762 0.97308 0.91209 0.81215 1.22533 1.02376 0.93101 1.05462 1.29266 0.91877 0.92272 0.93969 1.81212 1.10250 1.09928 1.13496 1.62023 1.08128 1.51122 1.01330 1.22382 1.02346 0.95451 0.86879 1.21658 1.02101 0.98805 0.91376 1.23151 1.02751 1.00789 0.96803 1.84726 1.79663 1.28095 1.04886 1.23087 1.44384 1.04156 0.96499 0.90718 1.26043 0.95872 0.96543 1.00606 1.70170 1.45240 1.17576 1.21583 0.84997 0.77882 0.78370 0.77321 1.18373 1.19961 1.19967 1.22553 0.86570 1.05629 0.94590 1.23639 1.02844 0.95889 1.01679 1.23449 1.02827 0.94098 1.02401 0.89324 0.88590 0.91701 0.91706 0.88701 0.89623 0.88018 0.91443 0.90126 0.92041 0.91610 0.91635 0.92149 0.87291 0.87535 0.87502 0.88158 0.88379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.26 71.98 0.59 -1.21 16 2 C 0.21 3.25 0.64 1.72 0.00 3.25 16 3 C -0.18 -1.95 7.88 71.98 0.57 -1.38 16 4 C 0.24 5.17 12.38 89.44 1.11 6.28 16 5 N -0.47 -12.51 18.54 20.01 0.37 -12.13 16 6 N -0.50 -9.91 4.47 -831.98 -3.72 -13.62 16 7 C 0.06 1.14 3.39 86.30 0.29 1.43 16 8 C -0.10 -2.89 4.06 30.60 0.12 -2.76 16 9 C -0.09 -3.11 5.67 71.98 0.41 -2.70 16 10 S -0.20 -10.41 21.44 -56.49 -1.21 -11.62 16 11 C -0.53 -29.94 9.50 67.95 0.65 -29.30 16 12 H 0.07 4.00 7.80 -2.91 -0.02 3.98 16 13 C 0.01 0.78 5.49 84.86 0.47 1.25 16 14 N -0.91 -54.39 13.22 21.65 0.29 -54.10 16 15 Si 0.99 43.09 29.55 68.60 2.03 45.12 16 16 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 19 C 0.02 0.32 4.55 44.91 0.20 0.52 16 20 C -0.20 -3.95 9.02 30.60 0.28 -3.68 16 21 C -0.19 -4.34 9.55 30.60 0.29 -4.05 16 22 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.10 0.98 6.06 -2.39 -0.01 0.96 16 24 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.06 0.79 7.30 -2.39 -0.02 0.77 16 26 H 0.09 0.86 6.85 -2.39 -0.02 0.84 16 27 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.10 1.70 5.55 -2.39 -0.01 1.69 16 29 H 0.07 1.18 5.38 -2.39 -0.01 1.17 16 30 H 0.08 2.40 3.83 -2.39 -0.01 2.40 16 31 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.27 14.98 8.31 -92.70 -0.77 14.21 16 35 H 0.11 2.21 6.81 -2.39 -0.02 2.20 16 36 H 0.11 2.25 4.90 -2.39 -0.01 2.23 16 37 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.10 2.66 5.43 -2.39 -0.01 2.65 16 Total: -1.00 -68.28 322.29 3.78 -64.49 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 1.05 Total: 14.21 kcal Atomic # 6 Polarization: -37.32 SS G_CDS: 4.98 Total: -32.34 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -3.06 Total: -79.86 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: -10.41 SS G_CDS: -1.21 Total: -11.62 kcal Total: -68.28 3.78 -64.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685986425.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.299 kcal (2) G-P(sol) polarization free energy of solvation -68.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds