Wall clock time and date at job start Mon Mar 30 2020 06:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09007 * 110.54234 * 57.42694 * 9 7 2 11 11 C 1.55015 * 110.60963 * 180.27671 * 9 7 2 12 12 C 1.54870 * 102.08544 * 155.42010 * 11 9 7 13 13 C 1.53877 * 104.10717 * 339.11465 * 12 11 9 14 14 C 1.52779 * 109.71876 * 238.65758 * 13 12 11 15 15 C 1.53066 * 109.44093 * 179.50522 * 14 13 12 16 16 C 1.52954 * 109.46071 * 59.34901 * 15 14 13 17 17 C 1.52951 * 109.92051 * 300.24388 * 16 15 14 18 18 C 1.52777 * 109.71097 * 117.53224 * 13 12 11 19 19 O 1.43701 * 109.40738 * 60.42090 * 16 15 14 20 20 C 1.44794 * 104.79091 * 95.53706 * 19 16 15 21 21 C 1.54915 * 101.74298 * 36.04265 * 20 19 16 22 22 O 1.43336 * 109.61696 * 179.72733 * 16 15 14 23 23 O 1.43529 * 107.54265 * 358.08835 * 13 12 11 24 24 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 25 25 H 1.08995 * 110.91064 * 273.61594 * 11 9 7 26 26 H 1.08996 * 110.90836 * 37.22367 * 11 9 7 27 27 H 1.08994 * 110.50238 * 97.77698 * 12 11 9 28 28 H 1.09002 * 110.49960 * 220.32654 * 12 11 9 29 29 H 1.08996 * 109.47131 * 299.48734 * 14 13 12 30 30 H 1.08995 * 109.47527 * 59.51234 * 14 13 12 31 31 H 1.09005 * 109.46954 * 299.35562 * 15 14 13 32 32 H 1.08991 * 109.47291 * 179.35175 * 15 14 13 33 33 H 1.09001 * 109.47238 * 299.74193 * 17 16 15 34 34 H 1.09000 * 109.47304 * 179.73859 * 17 16 15 35 35 H 1.09000 * 109.47713 * 300.47316 * 18 13 12 36 36 H 1.09000 * 109.47240 * 60.48922 * 18 13 12 37 37 H 1.08999 * 110.97076 * 277.92262 * 20 19 16 38 38 H 1.09006 * 110.96862 * 154.15479 * 20 19 16 39 39 H 1.09007 * 110.69257 * 206.05774 * 21 20 19 40 40 H 1.08998 * 110.69701 * 82.84761 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.5803 -2.5573 -0.8518 11 6 2.2349 -3.6970 0.0106 12 6 1.3765 -4.8188 0.6456 13 6 0.2693 -4.0621 1.4002 14 6 0.3114 -4.4303 2.8824 15 6 -0.7842 -3.6651 3.6287 16 6 -2.1489 -4.0239 3.0385 17 6 -2.1889 -3.6531 1.5551 18 6 -1.0934 -4.4180 0.8083 19 8 -2.3762 -5.4353 3.1845 20 6 -3.1501 -5.5610 4.4018 21 6 -4.0450 -4.2982 4.3383 22 8 -3.1781 -3.3138 3.7393 23 8 0.5186 -2.6578 1.2400 24 1 -0.4850 0.8400 0.0004 25 1 2.5313 -3.9614 -1.0044 26 1 3.1084 -3.4804 0.6255 27 1 0.9457 -5.4542 -0.1281 28 1 1.9750 -5.4126 1.3365 29 1 0.1474 -5.5020 2.9953 30 1 1.2849 -4.1660 3.2950 31 1 -0.6139 -2.5934 3.5251 32 1 -0.7621 -3.9361 4.6842 33 1 -2.0241 -2.5814 1.4439 34 1 -3.1623 -3.9160 1.1410 35 1 -1.1140 -4.1445 -0.2467 36 1 -1.2649 -5.4896 0.9094 37 1 -2.5037 -5.5376 5.2792 38 1 -3.7540 -6.4684 4.3881 39 1 -4.3457 -3.9884 5.3393 40 1 -4.9180 -4.4759 3.7104 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686253684.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:03 Heat of formation + Delta-G solvation = -145.674466 kcal Electronic energy + Delta-G solvation = -22366.859979 eV Core-core repulsion = 19146.120718 eV Total energy + Delta-G solvation = -3220.739261 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.65609 -38.73004 -34.98921 -34.58892 -32.40490 -30.94773 -30.48778 -29.84902 -27.98687 -25.70250 -23.30620 -22.90938 -22.38457 -20.66768 -19.92391 -18.62601 -16.96039 -16.57399 -16.43848 -15.29387 -15.21942 -14.83310 -14.50767 -14.06221 -13.51419 -13.39146 -13.16857 -12.94072 -12.63879 -12.29073 -12.15835 -12.02354 -11.72155 -11.61967 -11.43057 -10.93664 -10.90835 -10.65137 -10.61289 -10.50370 -10.12842 -10.06285 -10.02032 -9.64919 -9.51777 -9.05009 -8.98200 -8.54849 -7.90642 -5.98400 -4.09986 3.32331 3.40444 3.43909 3.57742 4.17337 4.45229 4.62311 4.87776 4.99717 5.04372 5.14159 5.28826 5.36052 5.46752 5.54956 5.58872 5.66302 5.73557 5.86633 5.92341 6.01344 6.03844 6.07173 6.15415 6.26347 6.40573 6.42708 6.53837 6.67649 6.71777 6.78439 6.84820 6.86686 6.99821 7.10070 7.41253 7.59360 7.92903 8.30109 8.68143 9.03372 9.60341 11.09435 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.025046 B = 0.006293 C = 0.005483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.678744 B = 4448.087793 C = 5105.441618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.078 3.922 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.527 4.527 8 H 0.062 0.938 9 C 0.209 3.791 10 H 0.027 0.973 11 C -0.148 4.148 12 C -0.146 4.146 13 C 0.095 3.905 14 C -0.096 4.096 15 C -0.127 4.127 16 C 0.263 3.737 17 C -0.110 4.110 18 C -0.116 4.116 19 O -0.369 6.369 20 C 0.013 3.987 21 C 0.019 3.981 22 O -0.377 6.377 23 O -0.342 6.342 24 H 0.260 0.740 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.101 0.899 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.704 -11.304 7.120 14.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.128 4.128 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.565 4.565 8 H 0.081 0.919 9 C 0.154 3.846 10 H 0.045 0.955 11 C -0.186 4.186 12 C -0.183 4.183 13 C 0.054 3.946 14 C -0.134 4.134 15 C -0.165 4.165 16 C 0.187 3.813 17 C -0.148 4.148 18 C -0.154 4.154 19 O -0.289 6.289 20 C -0.063 4.063 21 C -0.057 4.057 22 O -0.298 6.298 23 O -0.261 6.261 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.120 0.880 39 H 0.112 0.888 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.864 -10.965 7.115 14.327 hybrid contribution 0.321 0.622 0.091 0.705 sum -5.543 -10.344 7.207 13.772 Atomic orbital electron populations 1.70024 1.05943 1.26435 1.47526 1.25060 0.94781 0.99202 0.93763 0.86584 0.80240 0.83813 0.77591 1.19689 1.20970 1.20887 1.21039 0.92688 0.89842 1.52906 0.91946 1.20643 0.87577 0.92073 0.84311 0.95548 1.23211 0.99645 0.96470 0.99244 1.22937 0.97631 0.98439 0.99338 1.21685 0.92729 0.86775 0.93398 1.21496 0.98107 0.98950 0.94823 1.21968 0.92872 1.03387 0.98300 1.23462 0.88125 0.75972 0.93734 1.21710 0.98732 1.03565 0.90782 1.21828 0.94842 0.98893 0.99806 1.89263 1.73704 1.24399 1.41563 1.24302 0.93572 0.99331 0.89127 1.24119 0.94275 0.88195 0.99145 1.88952 1.40269 1.30695 1.69876 1.89233 1.76158 1.17149 1.43560 0.93013 0.92483 0.91922 0.92118 0.92165 0.91679 0.91443 0.88884 0.92605 0.88060 0.92308 0.91486 0.92113 0.91076 0.87961 0.88822 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.49 13.12 55.43 0.73 -24.76 16 2 C 0.08 2.20 5.44 -17.82 -0.10 2.11 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.53 -14.86 8.81 -34.44 -0.30 -15.16 16 8 H 0.06 1.72 7.77 -52.49 -0.41 1.31 16 9 C 0.21 5.39 3.04 -26.82 -0.08 5.31 16 10 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 11 C -0.15 -3.13 6.56 -24.68 -0.16 -3.29 16 12 C -0.15 -2.68 6.26 -25.29 -0.16 -2.84 16 13 C 0.10 1.91 0.71 -90.39 -0.06 1.85 16 14 C -0.10 -1.71 4.58 -26.81 -0.12 -1.84 16 15 C -0.13 -2.29 5.15 -26.72 -0.14 -2.43 16 16 C 0.26 4.58 1.03 -26.78 -0.03 4.55 16 17 C -0.11 -2.11 5.20 -26.72 -0.14 -2.25 16 18 C -0.12 -2.19 4.51 -26.81 -0.12 -2.31 16 19 O -0.37 -5.73 9.69 -59.03 -0.57 -6.30 16 20 C 0.01 0.15 7.91 38.17 0.30 0.45 16 21 C 0.02 0.23 8.07 38.17 0.31 0.54 16 22 O -0.38 -6.43 10.86 -59.03 -0.64 -7.07 16 23 O -0.34 -8.62 9.16 -35.23 -0.32 -8.94 16 24 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.06 1.33 8.04 -51.93 -0.42 0.91 16 27 H 0.06 1.02 7.68 -51.93 -0.40 0.62 16 28 H 0.06 0.99 7.69 -51.93 -0.40 0.59 16 29 H 0.06 1.05 7.71 -51.93 -0.40 0.65 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.09 1.95 7.75 -51.93 -0.40 1.54 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.10 2.30 7.76 -51.93 -0.40 1.89 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 1.33 8.13 -51.93 -0.42 0.90 16 36 H 0.06 1.04 7.71 -51.93 -0.40 0.64 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 312.79 15.07 4.71 4.71 Total: -1.00 -31.06 312.79 -8.51 -39.57 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.59 Total: 1.58 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -0.80 Total: -15.31 kcal Atomic # 7 Polarization: -25.49 SS G_CDS: 0.73 Total: -24.76 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -1.54 Total: -22.31 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.06 -8.51 -39.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686253684.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.105 kcal (2) G-P(sol) polarization free energy of solvation -31.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds