Wall clock time and date at job start Mon Mar 30 2020 06:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09007 * 110.54234 * 57.42694 * 9 7 2 11 11 C 1.55015 * 110.60963 * 180.27671 * 9 7 2 12 12 C 1.54870 * 102.08544 * 155.42010 * 11 9 7 13 13 C 1.53877 * 104.10717 * 339.11465 * 12 11 9 14 14 C 1.52779 * 109.71876 * 238.65758 * 13 12 11 15 15 C 1.53066 * 109.44093 * 179.50522 * 14 13 12 16 16 C 1.52954 * 109.46071 * 59.34901 * 15 14 13 17 17 C 1.52951 * 109.92051 * 300.24388 * 16 15 14 18 18 C 1.52777 * 109.71097 * 117.53224 * 13 12 11 19 19 O 1.43701 * 109.40738 * 60.42090 * 16 15 14 20 20 C 1.44794 * 104.79091 * 95.53706 * 19 16 15 21 21 C 1.54915 * 101.74298 * 36.04265 * 20 19 16 22 22 O 1.43336 * 109.61696 * 179.72733 * 16 15 14 23 23 O 1.43529 * 107.54265 * 358.08835 * 13 12 11 24 24 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 25 25 H 1.08995 * 110.91064 * 273.61594 * 11 9 7 26 26 H 1.08996 * 110.90836 * 37.22367 * 11 9 7 27 27 H 1.08994 * 110.50238 * 97.77698 * 12 11 9 28 28 H 1.09002 * 110.49960 * 220.32654 * 12 11 9 29 29 H 1.08996 * 109.47131 * 299.48734 * 14 13 12 30 30 H 1.08995 * 109.47527 * 59.51234 * 14 13 12 31 31 H 1.09005 * 109.46954 * 299.35562 * 15 14 13 32 32 H 1.08991 * 109.47291 * 179.35175 * 15 14 13 33 33 H 1.09001 * 109.47238 * 299.74193 * 17 16 15 34 34 H 1.09000 * 109.47304 * 179.73859 * 17 16 15 35 35 H 1.09000 * 109.47713 * 300.47316 * 18 13 12 36 36 H 1.09000 * 109.47240 * 60.48922 * 18 13 12 37 37 H 1.08999 * 110.97076 * 277.92262 * 20 19 16 38 38 H 1.09006 * 110.96862 * 154.15479 * 20 19 16 39 39 H 1.09007 * 110.69257 * 206.05774 * 21 20 19 40 40 H 1.08998 * 110.69701 * 82.84761 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.5803 -2.5573 -0.8518 11 6 2.2349 -3.6970 0.0106 12 6 1.3765 -4.8188 0.6456 13 6 0.2693 -4.0621 1.4002 14 6 0.3114 -4.4303 2.8824 15 6 -0.7842 -3.6651 3.6287 16 6 -2.1489 -4.0239 3.0385 17 6 -2.1889 -3.6531 1.5551 18 6 -1.0934 -4.4180 0.8083 19 8 -2.3762 -5.4353 3.1845 20 6 -3.1501 -5.5610 4.4018 21 6 -4.0450 -4.2982 4.3383 22 8 -3.1781 -3.3138 3.7393 23 8 0.5186 -2.6578 1.2400 24 1 -0.4850 0.8400 0.0004 25 1 2.5313 -3.9614 -1.0044 26 1 3.1084 -3.4804 0.6255 27 1 0.9457 -5.4542 -0.1281 28 1 1.9750 -5.4126 1.3365 29 1 0.1474 -5.5020 2.9953 30 1 1.2849 -4.1660 3.2950 31 1 -0.6139 -2.5934 3.5251 32 1 -0.7621 -3.9361 4.6842 33 1 -2.0241 -2.5814 1.4439 34 1 -3.1623 -3.9160 1.1410 35 1 -1.1140 -4.1445 -0.2467 36 1 -1.2649 -5.4896 0.9094 37 1 -2.5037 -5.5376 5.2792 38 1 -3.7540 -6.4684 4.3881 39 1 -4.3457 -3.9884 5.3393 40 1 -4.9180 -4.4759 3.7104 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686253684.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:02 Heat of formation + Delta-G solvation = -165.671377 kcal Electronic energy + Delta-G solvation = -22367.727110 eV Core-core repulsion = 19146.120718 eV Total energy + Delta-G solvation = -3221.606392 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.93180 -40.30957 -36.48305 -35.87070 -34.45918 -32.65786 -31.96571 -31.24306 -29.44448 -27.49349 -24.73725 -24.32172 -23.71870 -22.32955 -21.54496 -20.14375 -18.63968 -18.07726 -17.70923 -16.89213 -16.55162 -16.42028 -16.25438 -15.58119 -14.91847 -14.79702 -14.65958 -14.31199 -14.08467 -13.84016 -13.74998 -13.53700 -13.35511 -13.13268 -12.86586 -12.63973 -12.45040 -12.31213 -12.20775 -12.15361 -11.87748 -11.74021 -11.22995 -11.17487 -11.04334 -10.88977 -10.68344 -10.43870 -9.77888 -8.14228 -6.33654 1.39266 1.40812 1.53023 2.40997 2.49624 2.93896 3.08581 3.60828 3.65738 3.72727 3.79696 4.03656 4.05291 4.15548 4.19118 4.26791 4.36761 4.45887 4.50252 4.56248 4.57787 4.63729 4.71017 4.74855 4.86200 4.95030 5.00178 5.03758 5.04277 5.10251 5.20423 5.25555 5.33242 5.42520 5.51594 5.64523 5.77824 6.20609 6.22544 6.65872 7.04405 7.41399 8.93792 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.025046 B = 0.006293 C = 0.005483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.678744 B = 4448.087793 C = 5105.441618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.960 3.040 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.283 1.283 7 C -0.549 4.549 8 H 0.063 0.937 9 C 0.202 3.798 10 H -0.010 1.010 11 C -0.141 4.141 12 C -0.136 4.136 13 C 0.081 3.919 14 C -0.090 4.090 15 C -0.125 4.125 16 C 0.273 3.727 17 C -0.109 4.109 18 C -0.109 4.109 19 O -0.376 6.376 20 C 0.011 3.989 21 C 0.009 3.991 22 O -0.407 6.407 23 O -0.372 6.372 24 H 0.260 0.740 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.046 0.954 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.137 0.863 39 H 0.121 0.879 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.442 -13.403 8.499 16.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.179 4.179 3 Si 0.784 3.216 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.209 1.209 7 C -0.587 4.587 8 H 0.081 0.919 9 C 0.146 3.854 10 H 0.008 0.992 11 C -0.179 4.179 12 C -0.173 4.173 13 C 0.040 3.960 14 C -0.127 4.127 15 C -0.163 4.163 16 C 0.196 3.804 17 C -0.147 4.147 18 C -0.147 4.147 19 O -0.297 6.297 20 C -0.065 4.065 21 C -0.066 4.066 22 O -0.329 6.329 23 O -0.292 6.292 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.155 0.845 39 H 0.139 0.861 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.600 -13.084 8.500 16.577 hybrid contribution 0.133 1.216 -0.293 1.258 sum -5.467 -11.868 8.206 15.430 Atomic orbital electron populations 1.70176 1.07589 1.27193 1.48810 1.25931 0.95610 1.02972 0.93386 0.85503 0.79274 0.79183 0.77619 1.18541 1.20130 1.20876 1.21458 0.93017 0.91441 1.52735 0.91863 1.20482 0.87929 0.93366 0.83573 0.99185 1.23086 0.98789 0.95538 1.00452 1.22925 0.96719 0.97662 1.00040 1.22049 0.93810 0.84575 0.95532 1.21483 0.97984 1.00402 0.92861 1.21894 0.93658 1.00777 0.99962 1.23043 0.88094 0.77250 0.91991 1.21585 0.99308 1.00542 0.93246 1.21768 0.94314 1.00188 0.98408 1.89220 1.74396 1.22378 1.43739 1.24644 0.93552 1.00314 0.87956 1.24491 0.93958 0.87701 1.00469 1.88935 1.41014 1.32717 1.70207 1.89163 1.76446 1.20841 1.42749 0.93129 0.91106 0.92083 0.90265 0.89275 0.88823 0.91538 0.93168 0.90168 0.93040 0.91463 0.93515 0.89412 0.89653 0.84483 0.86132 0.90081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.75 13.12 21.45 0.28 -55.47 16 2 C 0.02 1.34 5.44 84.65 0.46 1.80 16 3 Si 0.96 45.30 29.54 68.60 2.03 47.32 16 4 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 6 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 7 C -0.55 -31.90 8.81 25.60 0.23 -31.67 16 8 H 0.06 3.55 7.77 -2.91 -0.02 3.52 16 9 C 0.20 10.82 3.04 30.54 0.09 10.91 16 10 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 11 C -0.14 -5.90 6.56 31.92 0.21 -5.69 16 12 C -0.14 -4.74 6.26 31.53 0.20 -4.54 16 13 C 0.08 3.21 0.71 -10.65 -0.01 3.21 16 14 C -0.09 -3.06 4.58 30.54 0.14 -2.92 16 15 C -0.12 -4.44 5.15 30.60 0.16 -4.28 16 16 C 0.27 9.32 1.03 30.56 0.03 9.35 16 17 C -0.11 -4.31 5.20 30.60 0.16 -4.15 16 18 C -0.11 -4.13 4.51 30.54 0.14 -3.99 16 19 O -0.38 -10.58 9.69 -126.22 -1.22 -11.81 16 20 C 0.01 0.21 7.91 72.64 0.57 0.78 16 21 C 0.01 0.20 8.07 72.64 0.59 0.79 16 22 O -0.41 -13.70 10.86 -126.22 -1.37 -15.07 16 23 O -0.37 -19.55 9.16 -148.98 -1.36 -20.91 16 24 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 25 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 26 H 0.06 2.55 8.04 -2.39 -0.02 2.53 16 27 H 0.08 2.47 7.68 -2.39 -0.02 2.45 16 28 H 0.09 2.61 7.69 -2.39 -0.02 2.59 16 29 H 0.09 2.68 7.71 -2.39 -0.02 2.66 16 30 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.05 2.20 7.75 -2.38 -0.02 2.18 16 32 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.05 2.53 7.76 -2.39 -0.02 2.51 16 34 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.05 1.91 8.13 -2.39 -0.02 1.90 16 36 H 0.09 2.83 7.71 -2.39 -0.02 2.81 16 37 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.14 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.12 1.87 8.14 -2.38 -0.02 1.85 16 40 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -70.97 312.79 2.32 -68.65 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 1.00 Total: 17.69 kcal Atomic # 6 Polarization: -33.37 SS G_CDS: 2.97 Total: -30.41 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.28 Total: -55.47 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -3.96 Total: -47.79 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -70.97 2.32 -68.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686253684.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.017 kcal (2) G-P(sol) polarization free energy of solvation -70.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds